Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007696

Physical Location & Seq

Genomic Coordinates Forward (+)

12064323 .. 12066454

Gene Structure 2132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G33260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGTCTTGTTTCTTAAGCTGTGTCCGTTTCGAAACAACCACCGACAACAACAAACCCACGAGTACAGAATCTGGTTCTGTCTCCGGTGTTACCTGTTATACCTGGGATGATGTTGAGTCTCTCACTTCCAATTTCTCTAGACTTATTGGTACTGGTGGCTATAGTAGTATCTACTTAGCTCGTGTGTCTGGTTCTATCAACGCAGCTCTCAAGGTTCATGTCAGTAGTCATCGTCTTTATCAAGTGTTTAGGTCTGAGCTTGAGATTTTGCTTCGTCTTCAACATCCTCACATTGTTAAGCTTCTTGGTTACTTTGACGATTCAGAAGAAAGTGGAGCACTATTACTAGAGTACCTTCCTCAAGGTAACCTTCAAGAGAAGCTTAACCGGAACAGCAAACAAGTGTTACCATGGAGAAACAGAACCGCTATTGCGTTTCAGGTTGCGCAAGCAATTGAACATATTCATGAGAAATGTAGTCCTCAGATTGTGCACGGTGACATCAAATCTTCCAACATACTTCTTGACAAACATTTCAACTCCAAGCTTTGTGATTTCGGATCAGCTAAAGTTGGTTTCTCGTCTATGGTTCAGCCTTCTAAGACGACGTCAACTATGTCACCACGATCCAAGCAAGTGATGATGATTGGTTCTCCAGGGTACACAGATCCTCATTACTTGAGAACTGGTATTGCTTCGAAGAAGATGGATATGTATGGGTTTGGAGTGGTGGTTCTTGAGTTGGTTTCGGGTAAAGAAGCGGTTAGTTCTGAGAGAGGTGAGATGTTGGTGCATTCAACAGCTTCGTTGATACATGAGATTCTTGATTCGAATGGAGATATTGGAGAAGAGAAAGTGAGACAGTTCTTGGATCCAAGGTTGTCCAGGGATGGTAGTATTGATTTGGAAGAGGTTAAGACAATGCTACGTGTGGCTGCTTTCTGTCTTCGTAGCCCTCCATCGCTGAGACCCTCTGCTTCTCAAGTAGTTCAAACTCTTAACAAGAAGATACCGTCTCTATCTTTCCTCGGTTGTGGTAAAAAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0008150 GO:0009611 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase

Protein Analysis

349

Amino Acids

38.58

Weight (kDa)

8.39

Isoelectric Point (pI)

51.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	45 - 256	4.8e-28	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	46 - 331	1.7e-39	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33260 AT1G33260 AT4G10390
fragaria_vesca	FvH4_5g10090
malus_domestica	MD06G1128000.v1.1 MD14G1143800.v1.1
prunus_persica	Prupe.5G137800_v2.0.a1
pyrus_communis	pycom06g11830 pycom14g11920
rosa_chinensis	RchiOBHm_Chr7g0188181
rosa_laevigata	RLG00000004721
rosa_multiflora	Rmu_co8339873.1_g000001 Rmu_sc0004001.1_g000014 Rmu_sc0032708.1_g000001 Rmu_sc0033897.1_g000001
rosa_roxburghii	Rroxscaffold_1G00031530 Rroxscaffold_3G00266690 Rroxscaffold_5G00335880
rosa_rugosa	Rorug06G0489000
rosa_samantha	Rh7AG093200 Rh7BG094700 Rh7CG094500 Rh7DG095100
rosa_wichuraiana	Rw7G008040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	611
Acc16I	TGCGCA	1 cut(s)	447
AciI	CCGC	2 cut(s)	426, 761
AclWI	GGATC	5 cut(s)	568, 621, 662, 866, 879
AcyI	GRCGYC	1 cut(s)	608
AfaI	GTAC	4 cut(s)	64, 151, 353, 662
AflII	CTTAAG	1 cut(s)	13
AflIII	ACRYGT	1 cut(s)	928
AgsI	TTSAA	6 cut(s)	281, 374, 458, 538, 798, 992
AjnI	CCWGG	3 cut(s)	101, 655, 884
AloI	GAACNNNNNNTCC	2 cut(s)	717, 749
AluBI	AGCT	9 cut(s)	18, 179, 206, 259, 301, 382, 547, 566, 803
AluI	AGCT	9 cut(s)	18, 179, 206, 259, 301, 382, 547, 566, 803
Alw21I	GWGCWC	2 cut(s)	340, 495
Alw26I	GTCTC	5 cut(s)	85, 123, 853, 961, 1020
Alw44I	GTGCAC	1 cut(s)	491
AlwI	GGATC	5 cut(s)	568, 621, 662, 866, 879
AlwNI	CAGNNNCTG	1 cut(s)	71
ApaLI	GTGCAC	1 cut(s)	491
ApeKI	GCWGC	2 cut(s)	203, 935
Asp700I	GAANNNNTTC	1 cut(s)	462
AspLEI	GCGC	1 cut(s)	448
AsuHPI	GGTGA	3 cut(s)	509, 612, 791
AsuII	TTCGAA	3 cut(s)	30, 698, 830
BaeGI	GKGCMC	1 cut(s)	495
BaeI	ACNNNNGTAYC	2 cut(s)	335, 368
BamHI	GGATCC	1 cut(s)	871
BauI	CACGAG	2 cut(s)	58, 180
BbsI	GAAGAC	2 cut(s)	269, 938
Bbv12I	GWGCWC	2 cut(s)	340, 495
BbvI	GCAGC	2 cut(s)	215, 922
BccI	CCATC	3 cut(s)	700, 884, 967
BciT130I	CCWGG	3 cut(s)	103, 657, 886
BcoDI	GTCTC	5 cut(s)	85, 123, 853, 961, 1020
BfaI	CTAG	2 cut(s)	138, 347
BfmI	CTRYAG	1 cut(s)	160
BfrI	CTTAAG	1 cut(s)	13
BisI	GCNGC	2 cut(s)	204, 936
BlsI	GCNGC	2 cut(s)	205, 937
Bme1390I	CCNGG	3 cut(s)	103, 657, 886
BmiI	GGNNCC	1 cut(s)	873
BmrFI	CCNGG	3 cut(s)	103, 657, 886
BpiI	GAAGAC	2 cut(s)	269, 938
BpmI	CTGGAG	1 cut(s)	639
Bpu14I	TTCGAA	3 cut(s)	30, 698, 830
BpuEI	CTTGAG	6 cut(s)	194, 281, 345, 700, 758, 966
BsaAI	YACGTR	1 cut(s)	929
BsaHI	GRCGYC	1 cut(s)	608
BsaI	GGTCTC	1 cut(s)	961
BsaJI	CCNNGG	6 cut(s)	102, 410, 656, 875, 885, 1027
BsaWI	WCCGGW	2 cut(s)	83, 387
BsaXI	ACNNNNNCTCC	2 cut(s)	717, 747
Bse1I	ACTGG	2 cut(s)	157, 691
BseBI	CCWGG	3 cut(s)	103, 657, 886
BseDI	CCNNGG	6 cut(s)	102, 410, 656, 875, 885, 1027
BseGI	GGATG	3 cut(s)	112, 283, 895
BseMII	CTCAG	4 cut(s)	246, 497, 762, 956
BseNI	ACTGG	2 cut(s)	157, 691
BseSI	GKGCMC	1 cut(s)	495
BseXI	GCAGC	2 cut(s)	215, 922
BsiHKAI	GWGCWC	2 cut(s)	340, 495
BsiSI	CCGG	2 cut(s)	84, 388
BsmAI	GTCTC	5 cut(s)	85, 123, 853, 961, 1020
BsmBI	CGTCTC	1 cut(s)	1020
BsmI	GAATGC	1 cut(s)	793
Bso31I	GGTCTC	1 cut(s)	961
Bsp119I	TTCGAA	3 cut(s)	30, 698, 830
Bsp1286I	GDGCHC	2 cut(s)	340, 495
Bsp143I	GATC	4 cut(s)	560, 626, 667, 871
Bsp19I	CCATGG	1 cut(s)	410
BspACI	CCGC	2 cut(s)	426, 761
BspCNI	CTCAG	4 cut(s)	247, 496, 763, 957
BspHI	TCATGA	1 cut(s)	466
BspLI	GGNNCC	1 cut(s)	873
BspPI	GGATC	5 cut(s)	568, 621, 662, 866, 879
BspT104I	TTCGAA	3 cut(s)	30, 698, 830
BspTI	CTTAAG	1 cut(s)	13
BspTNI	GGTCTC	1 cut(s)	961
BsrI	ACTGG	2 cut(s)	157, 691
BssECI	CCNNGG	6 cut(s)	102, 410, 656, 875, 885, 1027
BssMI	GATC	4 cut(s)	560, 626, 667, 871
BssNI	GRCGYC	1 cut(s)	608
BssSI	CACGAG	2 cut(s)	58, 180
BssT1I	CCWWGG	2 cut(s)	410, 875
Bst2BI	CACGAG	2 cut(s)	58, 180
Bst2UI	CCWGG	3 cut(s)	103, 657, 886
Bst4CI	ACNGT	3 cut(s)	497, 864, 1014
Bst6I	CTCTTC	2 cut(s)	843, 903
BstACI	GRCGYC	1 cut(s)	608
BstAFI	CTTAAG	1 cut(s)	13
BstBAI	YACGTR	1 cut(s)	929
BstBI	TTCGAA	3 cut(s)	30, 698, 830
BstC8I	GCNNGC	1 cut(s)	450
BstDEI	CTNAG	6 cut(s)	175, 255, 483, 600, 771, 965
BstDSI	CCRYGG	1 cut(s)	410
BstEII	GGTNACC	1 cut(s)	365
BstF5I	GGATG	3 cut(s)	112, 283, 895
BstHHI	GCGC	1 cut(s)	448
BstKTI	GATC	4 cut(s)	563, 629, 670, 874
BstMAI	GTCTC	5 cut(s)	85, 123, 853, 961, 1020
BstMBI	GATC	4 cut(s)	560, 626, 667, 871
BstNI	CCWGG	3 cut(s)	103, 657, 886
BstPI	GGTNACC	1 cut(s)	365
BstSCI	CCNGG	3 cut(s)	101, 655, 884
BstSFI	CTRYAG	1 cut(s)	160
BstSLI	GKGCMC	1 cut(s)	495
BstV1I	GCAGC	2 cut(s)	215, 922
BstV2I	GAAGAC	2 cut(s)	269, 938
BstX2I	RGATCY	2 cut(s)	667, 871
BstYI	RGATCY	2 cut(s)	667, 871
BtgI	CCRYGG	1 cut(s)	410
BtgZI	GCGATG	1 cut(s)	945
BtsCI	GGATG	3 cut(s)	112, 283, 895
Cac8I	GCNNGC	1 cut(s)	450
CaiI	CAGNNNCTG	1 cut(s)	71
CciI	TCATGA	1 cut(s)	466
CfoI	GCGC	1 cut(s)	448
Csp6I	GTAC	4 cut(s)	63, 150, 352, 661
CviAII	CATG	4 cut(s)	218, 411, 467, 815
CviQI	GTAC	4 cut(s)	63, 150, 352, 661
DdeI	CTNAG	6 cut(s)	175, 255, 483, 600, 771, 965
DpnI	GATC	4 cut(s)	562, 628, 669, 873
DpnII	GATC	4 cut(s)	560, 626, 667, 871
Eam1104I	CTCTTC	2 cut(s)	843, 903
EarI	CTCTTC	2 cut(s)	843, 903
Eco130I	CCWWGG	2 cut(s)	410, 875
Eco31I	GGTCTC	1 cut(s)	961
Eco91I	GGTNACC	1 cut(s)	365
EcoO65I	GGTNACC	1 cut(s)	365
EcoRII	CCWGG	3 cut(s)	101, 655, 884
EcoT14I	CCWWGG	2 cut(s)	410, 875
ErhI	CCWWGG	2 cut(s)	410, 875
Esp3I	CGTCTC	1 cut(s)	1020
FaeI	CATG	4 cut(s)	221, 414, 470, 818
FalI	AAGNNNNNCTT	4 cut(s)	354, 386, 366, 398
FatI	CATG	4 cut(s)	217, 410, 466, 814
Fnu4HI	GCNGC	2 cut(s)	204, 936
FokI	GGATG	3 cut(s)	119, 270, 902
Fsp4HI	GCNGC	2 cut(s)	204, 936
FspBI	CTAG	2 cut(s)	138, 347
FspI	TGCGCA	1 cut(s)	447
GlaI	GCGC	1 cut(s)	447
GluI	GCNGC	2 cut(s)	204, 936
GsuI	CTGGAG	1 cut(s)	639
HapII	CCGG	2 cut(s)	84, 388
HhaI	GCGC	1 cut(s)	448
Hin1I	GRCGYC	1 cut(s)	608
Hin1II	CATG	4 cut(s)	221, 414, 470, 818
Hin6I	GCGC	1 cut(s)	446
HinP1I	GCGC	1 cut(s)	446
HincII	GTYRAC	1 cut(s)	612
HindII	GTYRAC	1 cut(s)	612
HindIII	AAGCTT	3 cut(s)	299, 380, 545
HinfI	GANTC	5 cut(s)	68, 116, 320, 820, 827
HpaII	CCGG	2 cut(s)	84, 388
HphI	GGTGA	3 cut(s)	509, 612, 791
Hpy166II	GTNNAC	3 cut(s)	493, 612, 663
Hpy188I	TCNGA	5 cut(s)	256, 325, 486, 560, 772
Hpy188III	TCNNGA	6 cut(s)	138, 374, 467, 524, 737, 824
Hpy8I	GTNNAC	3 cut(s)	493, 612, 663
Hpy99I	CGWCG	1 cut(s)	610
HpyAV	CCTTC	3 cut(s)	365, 380, 606
HpyCH4III	ACNGT	3 cut(s)	497, 864, 1014
HpyCH4IV	ACGT	2 cut(s)	608, 928
HpyCH4V	TGCA	2 cut(s)	493, 793
HpyF3I	CTNAG	6 cut(s)	175, 255, 483, 600, 771, 965
HpySE526I	ACGT	2 cut(s)	608, 928
Hsp92I	GRCGYC	1 cut(s)	608
Hsp92II	CATG	4 cut(s)	221, 414, 470, 818
HspAI	GCGC	1 cut(s)	446
Kzo9I	GATC	4 cut(s)	560, 626, 667, 871
LmnI	GCTCC	1 cut(s)	335
Lsp1109I	GCAGC	2 cut(s)	215, 922
MaeI	CTAG	2 cut(s)	138, 347
MaeII	ACGT	2 cut(s)	608, 928
MaeIII	GTNAC	6 cut(s)	88, 308, 365, 405, 497, 618
MalI	GATC	4 cut(s)	562, 628, 669, 873
MboI	GATC	4 cut(s)	560, 626, 667, 871
MboII	GAAGA	9 cut(s)	269, 338, 501, 712, 715, 860, 920, 938, 1018
MfeI	CAATTG	1 cut(s)	453
MflI	RGATCY	2 cut(s)	667, 871
MhlI	GDGCHC	2 cut(s)	340, 495
MluCI	AATT	2 cut(s)	130, 453
MlyI	GAGTC	1 cut(s)	125
MmeI	TCCRAC	1 cut(s)	537
MnlI	CCTC	9 cut(s)	297, 369, 492, 681, 770, 904, 966, 982, 1037
MroXI	GAANNNNTTC	1 cut(s)	462
MseI	TTAA	5 cut(s)	14, 297, 384, 915, 999
MslI	CAYNNNNRTG	1 cut(s)	465
MspCI	CTTAAG	1 cut(s)	13
MspI	CCGG	2 cut(s)	84, 388
MspR9I	CCNGG	3 cut(s)	103, 657, 886
MunI	CAATTG	1 cut(s)	453
Mva1269I	GAATGC	1 cut(s)	793
MvaI	CCWGG	3 cut(s)	103, 657, 886
NcoI	CCATGG	1 cut(s)	410
NdeII	GATC	4 cut(s)	560, 626, 667, 871
NlaIII	CATG	4 cut(s)	221, 414, 470, 818
NlaIV	GGNNCC	1 cut(s)	873
NmuCI	GTSAC	2 cut(s)	497, 618
NsbI	TGCGCA	1 cut(s)	447
NspV	TTCGAA	3 cut(s)	30, 698, 830
PagI	TCATGA	1 cut(s)	466
PctI	GAATGC	1 cut(s)	793
PdmI	GAANNNNTTC	1 cut(s)	462
PfeI	GAWTC	4 cut(s)	68, 320, 820, 827
PflFI	GACNNNGTC	1 cut(s)	607
PkrI	GCNGC	2 cut(s)	205, 937
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
Ppu21I	YACGTR	1 cut(s)	929
Psp6I	CCWGG	3 cut(s)	101, 655, 884
PspEI	GGTNACC	1 cut(s)	365
PspGI	CCWGG	3 cut(s)	101, 655, 884
PspN4I	GGNNCC	1 cut(s)	873
PstNI	CAGNNNCTG	1 cut(s)	71
PsuI	RGATCY	2 cut(s)	667, 871
PsyI	GACNNNGTC	1 cut(s)	607
RsaI	GTAC	4 cut(s)	64, 151, 353, 662
RsaNI	GTAC	4 cut(s)	63, 150, 352, 661
RseI	CAYNNNNRTG	1 cut(s)	465
SaqAI	TTAA	5 cut(s)	14, 297, 384, 915, 999
SatI	GCNGC	2 cut(s)	204, 936
Sau3AI	GATC	4 cut(s)	560, 626, 667, 871
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	3 cut(s)	103, 657, 886
SduI	GDGCHC	2 cut(s)	340, 495
SfcI	CTRYAG	1 cut(s)	160
SfuI	TTCGAA	3 cut(s)	30, 698, 830
SmiMI	CAYNNNNRTG	1 cut(s)	465
SmlI	CTYRAG	7 cut(s)	13, 209, 260, 360, 679, 737, 981
SmoI	CTYRAG	7 cut(s)	13, 209, 260, 360, 679, 737, 981
Sse9I	AATT	2 cut(s)	130, 453
SsiI	CCGC	2 cut(s)	426, 761
SspMI	CTAG	2 cut(s)	138, 347
StyD4I	CCNGG	3 cut(s)	101, 655, 884
StyI	CCWWGG	2 cut(s)	410, 875
TaaI	ACNGT	3 cut(s)	497, 864, 1014
TaiI	ACGT	2 cut(s)	611, 931
TaqI	TCGA	3 cut(s)	30, 698, 830
TasI	AATT	2 cut(s)	130, 453
TatI	WGTACW	1 cut(s)	62
TfiI	GAWTC	4 cut(s)	68, 320, 820, 827
Tru1I	TTAA	5 cut(s)	14, 297, 384, 915, 999
Tru9I	TTAA	5 cut(s)	14, 297, 384, 915, 999
TseFI	GTSAC	2 cut(s)	497, 618
TseI	GCWGC	2 cut(s)	203, 935
Tsp45I	GTSAC	2 cut(s)	497, 618
TspDTI	ATGAA	2 cut(s)	206, 455
TspGWI	ACGGA	1 cut(s)	14
Tth111I	GACNNNGTC	1 cut(s)	607
Vha464I	CTTAAG	1 cut(s)	13
VneI	GTGCAC	1 cut(s)	491
XbaI	TCTAGA	1 cut(s)	137
XmnI	GAANNNNTTC	1 cut(s)	462
XspI	CTAG	2 cut(s)	138, 347
ZraI	GACGTC	1 cut(s)	609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.