MD06G1128000.v1.1

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Forward (+)
27041351 .. 27043625
2275 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1128000.v1.1.491

Sequence Viewer

Length: 1362 bp
ATGGCCGAATCTAACCTCGAAGAAGAAGACCAAGTTCTTACAGAAAGCCCATACGCTTACAATTTTGTCTGCTGTTACTCCTACTTCTTCACCTCCCTCGTTTTGTTTTCCTCACTGTCTACTTTCTCCGAGGCTTCCCGCTCCATCCCAACAACCACCCTTTCTCTCTCCTCCTTTTCCTCTCTCTCCTCCACCAACCCACCGTCAACCTCCCCTTCAAAACCATCTTCCCACGCTGACACCTCCAAAACCCTCGTCACATCTCTCACAATCTCCGCCGCCGCCGTCTTCCTCATCGTTTCAGTCATGGTGGTAATGAGATGCTTCGGATTCAGATCAAAACGCAAAGACAATGGAATCGTTGTGGAGAAGGAGGACCATGTTGAAGAAAGTGGGGAGTTTAGCGTGAAGAAATTGAGTTGGGATTGGATAGAGAGATCTACTGATGGCTTCTCCAAGGTGATTGGAACTGGAGGGTTCAGCAATGTGTACTTGGCACGAAACCCGGGGCCTAATTCGGGCGATGGGTTCTGCTCGATTAAGATCCACAACGGCAGCGAGCGGCTGAGTCGGGTTTTTAAGCAAGAACTCGATATTCTCCTCCGCCTTGAGCACCACCGCATCGTCAAGCTTCTTGGCTACTCCGAAAACCAAGAGGAGGGTGCTCTGGTTTTCGAGTACGTCACCAACGGAAATCTCCAAGAGAAGCTCCACGGCGGAGACGCCACCCCAGCACTGCCGTGGAAGAACCGAATGGCAATCGCCTTCCAAGTCGCACAAGCATTAGAATACCTGCACGAGAAATGCGCCCTCCAAATCGTTCACATGGACATCAAAGCCTCAAACATCTTACTCGACGAAAATCTCAACTGCAAGCTCTGCGATTTCGGGTCAGCGAAGATGGGGTTTTCCTCAACCGTCCAACCGCCGTCGTCGCTGAGAAATCAAGTCTTGACGGTGATGGGCTCGCCGGGTTACACTGATCCGCACTACCTCCGAACCGGAATCGCTTCGAAGAAAAACGACGTGTACAGCTTCGGCGTTTTGATCTTGGAGCTCGTTACGGGAATGGAGGCGTTTTGCTCCGAGAAAGGGCAGTTCTTGACGACTTTGGTGGGGGGCAGGTTGAGAGACGGCGGTTGTGAGGCGGCGGAGGTGGCAGAGTTGGTGGACCCGCGGCTGGGCGCGGCGGGGTTTGACCTCGAAGAGGCCAAGACCATGCTTGGTATTTCGGCAACGTGCTTGCGTCAGTCACCGACGCTGAGGCCTTCGGCAACTCAAATATTGGAAACCATTCGGGAGAAAGTATCGTCTGTTTCGTTTCTACAGTCACTGTCACATGACAAAGAAATCGTGTATTAG

Protein Analysis

454

Amino Acids

49.68

Weight (kDa)

5.58

Isoelectric Point (pI)

41.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 151 - 429 6.7e-34 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 153 - 430 4.1e-40 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 801, 1113
AccBSI CCGCTC 2 cut(s) 141, 562
AccI GTMKAC 1 cut(s) 119
AccII CGCG 2 cut(s) 1177, 1187
AclWI GGATC 2 cut(s) 538, 977
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 723
AfaI GTAC 3 cut(s) 491, 680, 1031
AfiI CCNNNNNNNGG 6 cut(s) 518, 658, 1092, 1180, 1181, 1207
AflIII ACRYGT 1 cut(s) 1026
AgsI TTSAA 2 cut(s) 219, 386
AjiI CACGTC 1 cut(s) 1027
AleI CACNNNNGTG 1 cut(s) 739
AluBI AGCT 5 cut(s) 631, 709, 877, 1035, 1057
AluI AGCT 5 cut(s) 631, 709, 877, 1035, 1057
Alw21I GWGCWC 3 cut(s) 615, 667, 1059
Alw26I GTCTC 2 cut(s) 714, 1125
AlwI GGATC 2 cut(s) 538, 977
AlwNI CAGNNNCTG 1 cut(s) 1333
Ama87I CYCGRG 1 cut(s) 505
AoxI GGCC 4 cut(s) 3, 509, 1209, 1265
ApeKI GCWGC 1 cut(s) 555
ArsI GACNNNNNNTTYG 2 cut(s) 240, 272
Asp700I GAANNNNTTC 2 cut(s) 1009, 1293
AspLEI GCGC 2 cut(s) 809, 1187
AspS9I GGNCC 3 cut(s) 376, 509, 1171
AsuC2I CCSGG 3 cut(s) 506, 507, 972
AsuHPI GGTGA 5 cut(s) 82, 472, 676, 970, 1245
AsuII TTCGAA 1 cut(s) 1013
AvaI CYCGRG 1 cut(s) 505
AvaII GGWCC 2 cut(s) 376, 1171
BanII GRGCYC 2 cut(s) 968, 1059
BauI CACGAG 1 cut(s) 797
BbsI GAAGAC 2 cut(s) 33, 280
Bbv12I GWGCWC 3 cut(s) 615, 667, 1059
BbvCI CCTCAGC 1 cut(s) 1262
BbvI GCAGC 1 cut(s) 567
BccI CCATC 6 cut(s) 152, 232, 440, 518, 895, 955
BceAI ACGGC 6 cut(s) 269, 568, 724, 730, 913, 1150
BcnI CCSGG 3 cut(s) 506, 507, 972
BcoDI GTCTC 2 cut(s) 714, 1125
BfmI CTRYAG 1 cut(s) 1325
BfuAI ACCTGC 2 cut(s) 801, 1113
BglII AGATCT 1 cut(s) 437
BisI GCNGC 7 cut(s) 279, 282, 556, 563, 1149, 1178, 1188
BlsI GCNGC 7 cut(s) 280, 283, 557, 564, 1150, 1179, 1189
Bme1390I CCNGG 3 cut(s) 506, 507, 972
Bme18I GGWCC 2 cut(s) 376, 1171
BmeT110I CYCGRG 1 cut(s) 505
BmgBI CACGTC 1 cut(s) 1027
BmgT120I GGNCC 3 cut(s) 376, 509, 1171
BmiI GGNNCC 2 cut(s) 510, 1173
BmrFI CCNGG 3 cut(s) 506, 507, 972
BmsI GCATC 2 cut(s) 311, 630
BpiI GAAGAC 2 cut(s) 33, 280
BpmI CTGGAG 1 cut(s) 492
Bpu10I CCTNAGC 1 cut(s) 1262
Bpu14I TTCGAA 1 cut(s) 1013
BpuEI CTTGAG 1 cut(s) 629
BpuMI CCSGG 3 cut(s) 506, 507, 972
BsaBI GATNNNNATC 2 cut(s) 334, 542
BsaHI GRCGYC 1 cut(s) 723
BsaJI CCNNGG 7 cut(s) 129, 456, 505, 506, 712, 740, 1175
BsaWI WCCGGW 1 cut(s) 1001
Bsc4I CCNNNNNNNGG 6 cut(s) 518, 658, 1092, 1180, 1181, 1207
Bse1I ACTGG 1 cut(s) 475
Bse3DI GCAATG 1 cut(s) 490
Bse8I GATNNNNATC 2 cut(s) 334, 542
BseDI CCNNGG 7 cut(s) 129, 456, 505, 506, 712, 740, 1175
BseGI GGATG 1 cut(s) 144
BseJI GATNNNNATC 2 cut(s) 334, 542
BseLI CCNNNNNNNGG 6 cut(s) 518, 658, 1092, 1180, 1181, 1207
BseMI GCAATG 1 cut(s) 490
BseMII CTCAG 3 cut(s) 557, 929, 1253
BseNI ACTGG 1 cut(s) 475
BseRI GAGGAG 4 cut(s) 160, 178, 590, 671
BseXI GCAGC 1 cut(s) 567
BseYI CCCAGC 2 cut(s) 730, 1180
BsgI GTGCAG 1 cut(s) 779
Bsh1236I CGCG 2 cut(s) 1177, 1187
BshFI GGCC 4 cut(s) 5, 511, 1211, 1267
BsiHKAI GWGCWC 3 cut(s) 615, 667, 1059
BsiHKCI CYCGRG 1 cut(s) 505
BsiSI CCGG 3 cut(s) 506, 971, 1002
BslI CCNNNNNNNGG 6 cut(s) 518, 658, 1092, 1180, 1181, 1207
BsmAI GTCTC 2 cut(s) 714, 1125
BsmBI CGTCTC 2 cut(s) 714, 1125
BsnI GGCC 4 cut(s) 5, 511, 1211, 1267
BsoBI CYCGRG 1 cut(s) 505
Bsp119I TTCGAA 1 cut(s) 1013
Bsp1286I GDGCHC 4 cut(s) 615, 667, 968, 1059
Bsp1407I TGTACA 1 cut(s) 1029
Bsp143I GATC 5 cut(s) 335, 437, 543, 982, 1047
BspANI GGCC 4 cut(s) 5, 511, 1211, 1267
BspCNI CTCAG 3 cut(s) 558, 930, 1254
BspFNI CGCG 2 cut(s) 1177, 1187
BspLI GGNNCC 2 cut(s) 510, 1173
BspMI ACCTGC 2 cut(s) 801, 1113
BspPI GGATC 2 cut(s) 538, 977
BspT104I TTCGAA 1 cut(s) 1013
BsrBI CCGCTC 2 cut(s) 141, 562
BsrDI GCAATG 1 cut(s) 490
BsrGI TGTACA 1 cut(s) 1029
BsrI ACTGG 1 cut(s) 475
BssECI CCNNGG 7 cut(s) 129, 456, 505, 506, 712, 740, 1175
BssMI GATC 5 cut(s) 335, 437, 543, 982, 1047
BssNI GRCGYC 1 cut(s) 723
BssSI CACGAG 1 cut(s) 797
BssT1I CCWWGG 1 cut(s) 456
Bst2BI CACGAG 1 cut(s) 797
Bst4CI ACNGT 6 cut(s) 117, 204, 919, 958, 1329, 1335
Bst6I CTCTTC 1 cut(s) 1200
BstACI GRCGYC 1 cut(s) 723
BstAPI GCANNNNNTGC 1 cut(s) 879
BstAUI TGTACA 1 cut(s) 1029
BstBI TTCGAA 1 cut(s) 1013
BstC8I GCNNGC 4 cut(s) 560, 875, 968, 1244
BstDEI CTNAG 3 cut(s) 566, 938, 1262
BstDSI CCRYGG 3 cut(s) 712, 740, 1175
BstENI CCTNNNNNAGG 1 cut(s) 1205
BstF5I GGATG 1 cut(s) 144
BstFNI CGCG 2 cut(s) 1177, 1187
BstHHI GCGC 2 cut(s) 809, 1187
BstKTI GATC 5 cut(s) 338, 440, 546, 985, 1050
BstMAI GTCTC 2 cut(s) 714, 1125
BstMBI GATC 5 cut(s) 335, 437, 543, 982, 1047
BstMWI GCNNNNNNNGC 4 cut(s) 731, 879, 934, 1157
BstSCI CCNGG 3 cut(s) 504, 505, 970
BstSFI CTRYAG 1 cut(s) 1325
BstUI CGCG 2 cut(s) 1177, 1187
BstV1I GCAGC 1 cut(s) 567
BstV2I GAAGAC 2 cut(s) 33, 280
BstX2I RGATCY 2 cut(s) 437, 543
BstYI RGATCY 2 cut(s) 437, 543
BsuRI GGCC 4 cut(s) 5, 511, 1211, 1267
BtgI CCRYGG 3 cut(s) 712, 740, 1175
BtgZI GCGATG 1 cut(s) 537
BtrI CACGTC 1 cut(s) 1027
BtsCI GGATG 1 cut(s) 144
BtsI GCAGTG 1 cut(s) 734
BtsIMutI CAGTG 4 cut(s) 113, 734, 978, 1331
BveI ACCTGC 2 cut(s) 801, 1113
Cac8I GCNNGC 4 cut(s) 560, 875, 968, 1244
CaiI CAGNNNCTG 1 cut(s) 1333
CfoI GCGC 2 cut(s) 809, 1187
Cfr13I GGNCC 3 cut(s) 376, 509, 1171
Cfr42I CCGCGG 1 cut(s) 1178
Cfr9I CCCGGG 1 cut(s) 505
CseI GACGC 3 cut(s) 731, 1235, 1267
Csp6I GTAC 3 cut(s) 490, 679, 1030
CviAII CATG 5 cut(s) 307, 380, 826, 1219, 1340
CviQI GTAC 3 cut(s) 490, 679, 1030
DdeI CTNAG 3 cut(s) 566, 938, 1262
DpnI GATC 5 cut(s) 337, 439, 545, 984, 1049
DpnII GATC 5 cut(s) 335, 437, 543, 982, 1047
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 1200
EarI CTCTTC 1 cut(s) 1200
EciI GGCGGA 4 cut(s) 265, 593, 732, 1166
Ecl136II GAGCTC 1 cut(s) 1057
Eco130I CCWWGG 1 cut(s) 456
Eco147I AGGCCT 1 cut(s) 1267
Eco24I GRGCYC 2 cut(s) 968, 1059
Eco47I GGWCC 2 cut(s) 376, 1171
Eco53kI GAGCTC 1 cut(s) 1057
Eco88I CYCGRG 1 cut(s) 505
EcoICRI GAGCTC 1 cut(s) 1057
EcoNI CCTNNNNNAGG 1 cut(s) 1205
EcoO109I RGGNCCY 1 cut(s) 509
EcoT14I CCWWGG 1 cut(s) 456
EcoT38I GRGCYC 2 cut(s) 968, 1059
ErhI CCWWGG 1 cut(s) 456
Esp3I CGTCTC 2 cut(s) 714, 1125
FaeI CATG 5 cut(s) 310, 383, 829, 1222, 1343
FaiI YATR 6 cut(s) 52, 308, 381, 827, 1220, 1341
FatI CATG 5 cut(s) 306, 379, 825, 1218, 1339
FauI CCCGC 3 cut(s) 146, 1182, 1183
FblI GTMKAC 1 cut(s) 119
Fnu4HI GCNGC 7 cut(s) 279, 282, 556, 563, 1149, 1178, 1188
FokI GGATG 1 cut(s) 131
FriOI GRGCYC 2 cut(s) 968, 1059
Fsp4HI GCNGC 7 cut(s) 279, 282, 556, 563, 1149, 1178, 1188
GlaI GCGC 2 cut(s) 808, 1186
GluI GCNGC 7 cut(s) 279, 282, 556, 563, 1149, 1178, 1188
GsaI CCCAGC 2 cut(s) 734, 1184
GsuI CTGGAG 1 cut(s) 492
HaeIII GGCC 4 cut(s) 5, 511, 1211, 1267
HapII CCGG 3 cut(s) 506, 971, 1002
HgaI GACGC 3 cut(s) 731, 1235, 1267
HhaI GCGC 2 cut(s) 809, 1187
Hin1I GRCGYC 1 cut(s) 723
Hin1II CATG 5 cut(s) 310, 383, 829, 1222, 1343
Hin6I GCGC 2 cut(s) 807, 1185
HinP1I GCGC 2 cut(s) 807, 1185
HincII GTYRAC 1 cut(s) 207
HindII GTYRAC 1 cut(s) 207
HindIII AAGCTT 1 cut(s) 629
HinfI GANTC 5 cut(s) 8, 330, 357, 568, 1005
HpaII CCGG 3 cut(s) 506, 971, 1002
HphI GGTGA 5 cut(s) 82, 472, 676, 970, 1245
Hpy166II GTNNAC 6 cut(s) 120, 207, 490, 823, 1030, 1171
Hpy188I TCNGA 6 cut(s) 130, 329, 335, 646, 998, 1087
Hpy188III TCNNGA 3 cut(s) 952, 1102, 1298
Hpy8I GTNNAC 6 cut(s) 120, 207, 490, 823, 1030, 1171
Hpy99I CGWCG 5 cut(s) 860, 934, 937, 1028, 1261
HpyAV CCTTC 4 cut(s) 225, 364, 775, 1278
HpyCH4III ACNGT 6 cut(s) 117, 204, 919, 958, 1329, 1335
HpyCH4IV ACGT 3 cut(s) 681, 1026, 1238
HpyCH4V TGCA 2 cut(s) 796, 873
HpyF10VI GCNNNNNNNGC 4 cut(s) 731, 879, 934, 1157
HpyF3I CTNAG 3 cut(s) 566, 938, 1262
HpySE526I ACGT 3 cut(s) 681, 1026, 1238
Hsp92I GRCGYC 1 cut(s) 723
Hsp92II CATG 5 cut(s) 310, 383, 829, 1222, 1343
HspAI GCGC 2 cut(s) 807, 1185
KspI CCGCGG 1 cut(s) 1178
Kzo9I GATC 5 cut(s) 335, 437, 543, 982, 1047
LmnI GCTCC 4 cut(s) 146, 714, 1054, 1088
LpnPI CCDG 9 cut(s) 456, 519, 653, 744, 806, 984, 1015, 1108, 1166
Lsp1109I GCAGC 1 cut(s) 567
LweI GCATC 2 cut(s) 311, 630
MaeII ACGT 3 cut(s) 681, 1026, 1238
MaeIII GTNAC 8 cut(s) 74, 256, 682, 974, 1060, 1251, 1329, 1335
MalI GATC 5 cut(s) 337, 439, 545, 984, 1049
MbiI CCGCTC 2 cut(s) 141, 562
MboI GATC 5 cut(s) 335, 437, 543, 982, 1047
MflI RGATCY 2 cut(s) 437, 543
MhlI GDGCHC 4 cut(s) 615, 667, 968, 1059
MluCI AATT 3 cut(s) 61, 413, 514
MlyI GAGTC 1 cut(s) 577
MmeI TCCRAC 1 cut(s) 946
MroXI GAANNNNTTC 2 cut(s) 1009, 1293
MseI TTAA 2 cut(s) 540, 579
MslI CAYNNNNRTG 1 cut(s) 739
MspA1I CMGCKG 1 cut(s) 1177
MspI CCGG 3 cut(s) 506, 971, 1002
MspR9I CCNGG 3 cut(s) 506, 507, 972
MvnI CGCG 2 cut(s) 1177, 1187
MwoI GCNNNNNNNGC 4 cut(s) 731, 879, 934, 1157
NciI CCSGG 3 cut(s) 506, 507, 972
NdeII GATC 5 cut(s) 335, 437, 543, 982, 1047
NlaIII CATG 5 cut(s) 310, 383, 829, 1222, 1343
NlaIV GGNNCC 2 cut(s) 510, 1173
NmuCI GTSAC 5 cut(s) 256, 682, 1251, 1329, 1335
NspV TTCGAA 1 cut(s) 1013
OliI CACNNNNGTG 1 cut(s) 739
PceI AGGCCT 1 cut(s) 1267
PcsI WCGNNNNNNNCGW 1 cut(s) 1316
PdmI GAANNNNTTC 2 cut(s) 1009, 1293
PfeI GAWTC 4 cut(s) 8, 330, 357, 1005
PkrI GCNGC 7 cut(s) 280, 283, 557, 564, 1150, 1179, 1189
PleI GAGTC 1 cut(s) 576
PpsI GAGTC 1 cut(s) 576
Psp124BI GAGCTC 1 cut(s) 1059
PspFI CCCAGC 2 cut(s) 730, 1180
PspN4I GGNNCC 2 cut(s) 510, 1173
PspPI GGNCC 3 cut(s) 376, 509, 1171
PstNI CAGNNNCTG 1 cut(s) 1333
PsuI RGATCY 2 cut(s) 437, 543
RsaI GTAC 3 cut(s) 491, 680, 1031
RsaNI GTAC 3 cut(s) 490, 679, 1030
RseI CAYNNNNRTG 1 cut(s) 739
SacI GAGCTC 1 cut(s) 1059
SacII CCGCGG 1 cut(s) 1178
SaqAI TTAA 2 cut(s) 540, 579
SatI GCNGC 7 cut(s) 279, 282, 556, 563, 1149, 1178, 1188
Sau3AI GATC 5 cut(s) 335, 437, 543, 982, 1047
Sau96I GGNCC 3 cut(s) 376, 509, 1171
SchI GAGTC 1 cut(s) 577
ScrFI CCNGG 3 cut(s) 506, 507, 972
SduI GDGCHC 4 cut(s) 615, 667, 968, 1059
SfaNI GCATC 2 cut(s) 311, 630
SfcI CTRYAG 1 cut(s) 1325
Sfr303I CCGCGG 1 cut(s) 1178
SfuI TTCGAA 1 cut(s) 1013
SgrBI CCGCGG 1 cut(s) 1178
SinI GGWCC 2 cut(s) 376, 1171
SmaI CCCGGG 1 cut(s) 507
SmiMI CAYNNNNRTG 1 cut(s) 739
SmlI CTYRAG 1 cut(s) 608
SmoI CTYRAG 1 cut(s) 608
Sse9I AATT 3 cut(s) 61, 413, 514
SseBI AGGCCT 1 cut(s) 1267
SspI AATATT 1 cut(s) 1284
SstI GAGCTC 1 cut(s) 1059
StuI AGGCCT 1 cut(s) 1267
StyD4I CCNGG 3 cut(s) 504, 505, 970
StyI CCWWGG 1 cut(s) 456
TaaI ACNGT 6 cut(s) 117, 204, 919, 958, 1329, 1335
TaiI ACGT 3 cut(s) 684, 1029, 1241
TaqI TCGA 7 cut(s) 18, 536, 591, 675, 855, 1013, 1203
TasI AATT 3 cut(s) 61, 413, 514
TatI WGTACW 2 cut(s) 489, 1029
TauI GCSGC 6 cut(s) 281, 284, 565, 1151, 1180, 1190
TfiI GAWTC 4 cut(s) 8, 330, 357, 1005
Tru1I TTAA 2 cut(s) 540, 579
Tru9I TTAA 2 cut(s) 540, 579
TscAI CASTG 4 cut(s) 120, 741, 985, 1338
TseFI GTSAC 5 cut(s) 256, 682, 1251, 1329, 1335
TseI GCWGC 1 cut(s) 555
Tsp45I GTSAC 5 cut(s) 256, 682, 1251, 1329, 1335
TspGWI ACGGA 1 cut(s) 705
TspMI CCCGGG 1 cut(s) 505
TspRI CASTG 4 cut(s) 120, 741, 985, 1338
VpaK11BI GGWCC 2 cut(s) 376, 1171
XagI CCTNNNNNAGG 1 cut(s) 1205
XcmI CCANNNNNNNNNTGG 1 cut(s) 738
XmaI CCCGGG 1 cut(s) 505
XmiI GTMKAC 1 cut(s) 119
XmnI GAANNNNTTC 2 cut(s) 1009, 1293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.