Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033897.1

Orthogroup ID

OG0007696

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 638

Gene Structure 638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033897.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 527 bp

agcaagaactggacatccttcttcgtctcggccatcaaagcatcgtcaagcttctcggttattgtgatgatcgagaggagggtgctctgattttcgagtatgtggccaacggaaatttacaagagaagcttcacggcgaagaacagagtgttctgccgtggaagaataggatgctcattgcataccaaatcgcgcaagccattgaatacctgcacgagaaatgcgacctacaaattgttcacatggacatcaaagcctccaacgtgttgctcgacaaaggcctaaactccaagctctgcgatttcggctcagccaaaatggggttttcctccaccgtccaaccgccgtctacggccacaaagaagcagctaatgatgggatctcccggctacaccgacccgcactacatgaggacaggaatcgcatccaagaagaacgacgtgtacagcttcggagtgctgctcctggagctcgtgacggggatggaggccttctgctcggaaaagggtcaactcttgacgtcggta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0008150 GO:0009611 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase

Protein Analysis

175

Amino Acids

19.5

Weight (kDa)

5.72

Isoelectric Point (pI)

38.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33260 AT1G33260 AT4G10390
fragaria_vesca	FvH4_5g10090
malus_domestica	MD06G1128000.v1.1 MD14G1143800.v1.1
prunus_persica	Prupe.5G137800_v2.0.a1
pyrus_communis	pycom06g11830 pycom14g11920
rosa_chinensis	RchiOBHm_Chr7g0188181
rosa_laevigata	RLG00000004721
rosa_multiflora	Rmu_co8339873.1_g000001 Rmu_sc0004001.1_g000014 Rmu_sc0032708.1_g000001 Rmu_sc0033897.1_g000001
rosa_roxburghii	Rroxscaffold_1G00031530 Rroxscaffold_3G00266690 Rroxscaffold_5G00335880
rosa_rugosa	Rorug06G0489000
rosa_samantha	Rh7AG093200 Rh7BG094700 Rh7CG094500 Rh7DG095100
rosa_wichuraiana	Rw7G008040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	523
Acc36I	ACCTGC	1 cut(s)	218
AccI	GTMKAC	1 cut(s)	349
AccII	CGCG	1 cut(s)	193
AciI	CCGC	2 cut(s)	343, 400
AclWI	GGATC	1 cut(s)	387
AcoI	YGGCCR	3 cut(s)	30, 104, 353
AcsI	RAATTY	1 cut(s)	114
AcyI	GRCGYC	1 cut(s)	520
AfaI	GTAC	1 cut(s)	445
AfiI	CCNNNNNNNGG	1 cut(s)	320
AflIII	ACRYGT	2 cut(s)	263, 440
AgsI	TTSAA	1 cut(s)	205
AjiI	CACGTC	1 cut(s)	441
AjnI	CCWGG	1 cut(s)	464
AloI	GAACNNNNNNTCC	1 cut(s)	31
AluBI	AGCT	6 cut(s)	51, 129, 294, 369, 449, 471
AluI	AGCT	6 cut(s)	51, 129, 294, 369, 449, 471
Alw21I	GWGCWC	2 cut(s)	87, 473
Alw26I	GTCTC	1 cut(s)	31
AlwI	GGATC	1 cut(s)	387
AoxI	GGCC	5 cut(s)	30, 104, 279, 353, 488
ApeKI	GCWGC	2 cut(s)	366, 459
ApoI	RAATTY	1 cut(s)	114
AspLEI	GCGC	1 cut(s)	195
AsuC2I	CCSGG	1 cut(s)	386
BalI	TGGCCA	1 cut(s)	106
BanII	GRGCYC	1 cut(s)	473
BauI	CACGAG	2 cut(s)	214, 472
Bbv12I	GWGCWC	2 cut(s)	87, 473
BbvI	GCAGC	2 cut(s)	378, 446
BccI	CCATC	3 cut(s)	41, 369, 477
BceAI	ACGGC	4 cut(s)	141, 150, 330, 368
BciT130I	CCWGG	1 cut(s)	466
BcnI	CCSGG	1 cut(s)	386
BcoDI	GTCTC	1 cut(s)	31
BfuAI	ACCTGC	1 cut(s)	218
BisI	GCNGC	2 cut(s)	367, 460
BlpI	GCTNAGC	1 cut(s)	309
BlsI	GCNGC	2 cut(s)	368, 461
Bme1390I	CCNGG	2 cut(s)	386, 466
BmgBI	CACGTC	1 cut(s)	441
BmrFI	CCNGG	2 cut(s)	386, 466
BmsI	GCATC	3 cut(s)	50, 161, 433
BplI	GAGNNNNNCTC	2 cut(s)	446, 478
BpmI	CTGGAG	1 cut(s)	487
Bpu1102I	GCTNAGC	1 cut(s)	309
BpuMI	CCSGG	1 cut(s)	386
BsaHI	GRCGYC	1 cut(s)	520
BsaJI	CCNNGG	1 cut(s)	157
Bsc4I	CCNNNNNNNGG	1 cut(s)	320
Bse1I	ACTGG	1 cut(s)	14
Bse3DI	GCAATG	1 cut(s)	176
BseBI	CCWGG	1 cut(s)	466
BseDI	CCNNGG	1 cut(s)	157
BseGI	GGATG	4 cut(s)	14, 176, 424, 488
BseLI	CCNNNNNNNGG	1 cut(s)	320
BseMI	GCAATG	1 cut(s)	176
BseMII	CTCAG	1 cut(s)	323
BseNI	ACTGG	1 cut(s)	14
BseRI	GAGGAG	1 cut(s)	91
BseXI	GCAGC	2 cut(s)	378, 446
BsgI	GTGCAG	1 cut(s)	196
Bsh1236I	CGCG	1 cut(s)	193
BshFI	GGCC	5 cut(s)	32, 106, 281, 355, 490
BsiHKAI	GWGCWC	2 cut(s)	87, 473
BsiSI	CCGG	1 cut(s)	386
BslI	CCNNNNNNNGG	1 cut(s)	320
BsmAI	GTCTC	1 cut(s)	31
BsmBI	CGTCTC	1 cut(s)	31
BsnI	GGCC	5 cut(s)	32, 106, 281, 355, 490
Bsp1286I	GDGCHC	2 cut(s)	87, 473
Bsp1407I	TGTACA	1 cut(s)	443
Bsp143I	GATC	2 cut(s)	69, 379
Bsp1720I	GCTNAGC	1 cut(s)	309
BspACI	CCGC	2 cut(s)	343, 400
BspANI	GGCC	5 cut(s)	32, 106, 281, 355, 490
BspCNI	CTCAG	1 cut(s)	322
BspFNI	CGCG	1 cut(s)	193
BspMI	ACCTGC	1 cut(s)	218
BspPI	GGATC	1 cut(s)	387
BsrDI	GCAATG	1 cut(s)	176
BsrGI	TGTACA	1 cut(s)	443
BsrI	ACTGG	1 cut(s)	14
BssECI	CCNNGG	1 cut(s)	157
BssMI	GATC	2 cut(s)	69, 379
BssNI	GRCGYC	1 cut(s)	520
BssSI	CACGAG	2 cut(s)	214, 472
Bst2BI	CACGAG	2 cut(s)	214, 472
Bst2UI	CCWGG	1 cut(s)	466
Bst4CI	ACNGT	1 cut(s)	336
BstACI	GRCGYC	1 cut(s)	520
BstAUI	TGTACA	1 cut(s)	443
BstC8I	GCNNGC	1 cut(s)	197
BstDEI	CTNAG	1 cut(s)	309
BstDSI	CCRYGG	1 cut(s)	157
BstF5I	GGATG	4 cut(s)	14, 176, 424, 488
BstFNI	CGCG	1 cut(s)	193
BstHHI	GCGC	1 cut(s)	195
BstKTI	GATC	2 cut(s)	72, 382
BstMAI	GTCTC	1 cut(s)	31
BstMBI	GATC	2 cut(s)	69, 379
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 305, 468
BstNI	CCWGG	1 cut(s)	466
BstSCI	CCNGG	2 cut(s)	384, 464
BstUI	CGCG	1 cut(s)	193
BstV1I	GCAGC	2 cut(s)	378, 446
BstX2I	RGATCY	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	379
BsuRI	GGCC	5 cut(s)	32, 106, 281, 355, 490
BtgI	CCRYGG	1 cut(s)	157
BtrI	CACGTC	1 cut(s)	441
BtsCI	GGATG	4 cut(s)	14, 176, 424, 488
BveI	ACCTGC	1 cut(s)	218
Cac8I	GCNNGC	1 cut(s)	197
CfoI	GCGC	1 cut(s)	195
Csp6I	GTAC	1 cut(s)	444
CviAII	CATG	2 cut(s)	243, 408
CviQI	GTAC	1 cut(s)	444
DdeI	CTNAG	1 cut(s)	309
DpnI	GATC	2 cut(s)	71, 381
DpnII	GATC	2 cut(s)	69, 379
EaeI	YGGCCR	3 cut(s)	30, 104, 353
Ecl136II	GAGCTC	1 cut(s)	471
Eco147I	AGGCCT	2 cut(s)	281, 490
Eco24I	GRGCYC	1 cut(s)	473
Eco53kI	GAGCTC	1 cut(s)	471
EcoICRI	GAGCTC	1 cut(s)	471
EcoRII	CCWGG	1 cut(s)	464
EcoT38I	GRGCYC	1 cut(s)	473
Esp3I	CGTCTC	1 cut(s)	31
FaeI	CATG	2 cut(s)	246, 411
FaiI	YATR	4 cut(s)	101, 183, 244, 409
FalI	AAGNNNNNCTT	2 cut(s)	113, 145
FatI	CATG	2 cut(s)	242, 407
FauI	CCCGC	1 cut(s)	407
FblI	GTMKAC	1 cut(s)	349
Fnu4HI	GCNGC	2 cut(s)	367, 460
FokI	GGATG	3 cut(s)	183, 411, 495
FriOI	GRGCYC	1 cut(s)	473
Fsp4HI	GCNGC	2 cut(s)	367, 460
GlaI	GCGC	1 cut(s)	194
GluI	GCNGC	2 cut(s)	367, 460
GsuI	CTGGAG	1 cut(s)	487
HaeIII	GGCC	5 cut(s)	32, 106, 281, 355, 490
HapII	CCGG	1 cut(s)	386
HhaI	GCGC	1 cut(s)	195
Hin1I	GRCGYC	1 cut(s)	520
Hin1II	CATG	2 cut(s)	246, 411
Hin6I	GCGC	1 cut(s)	193
HinP1I	GCGC	1 cut(s)	193
HincII	GTYRAC	1 cut(s)	511
HindII	GTYRAC	1 cut(s)	511
HindIII	AAGCTT	2 cut(s)	49, 127
HinfI	GANTC	1 cut(s)	419
HpaII	CCGG	1 cut(s)	386
Hpy166II	GTNNAC	4 cut(s)	240, 350, 444, 511
Hpy188I	TCNGA	3 cut(s)	89, 454, 501
Hpy188III	TCNNGA	3 cut(s)	73, 474, 516
Hpy8I	GTNNAC	4 cut(s)	240, 350, 444, 511
Hpy99I	CGWCG	2 cut(s)	442, 525
HpyAV	CCTTC	2 cut(s)	28, 501
HpyCH4III	ACNGT	1 cut(s)	336
HpyCH4IV	ACGT	3 cut(s)	263, 440, 520
HpyCH4V	TGCA	2 cut(s)	181, 213
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 305, 468
HpyF3I	CTNAG	1 cut(s)	309
HpySE526I	ACGT	3 cut(s)	263, 440, 520
Hsp92I	GRCGYC	1 cut(s)	520
Hsp92II	CATG	2 cut(s)	246, 411
HspAI	GCGC	1 cut(s)	193
Kzo9I	GATC	2 cut(s)	69, 379
LmnI	GCTCC	2 cut(s)	467, 468
LpnPI	CCDG	5 cut(s)	223, 399, 401, 451, 478
Lsp1109I	GCAGC	2 cut(s)	378, 446
LweI	GCATC	3 cut(s)	50, 161, 433
MaeII	ACGT	3 cut(s)	263, 440, 520
MaeIII	GTNAC	1 cut(s)	474
MalI	GATC	2 cut(s)	71, 381
MboI	GATC	2 cut(s)	69, 379
MboII	GAAGA	4 cut(s)	13, 151, 174, 444
MflI	RGATCY	1 cut(s)	379
MhlI	GDGCHC	2 cut(s)	87, 473
MlsI	TGGCCA	1 cut(s)	106
MluCI	AATT	2 cut(s)	114, 233
MluNI	TGGCCA	1 cut(s)	106
MmeI	TCCRAC	2 cut(s)	284, 363
MnlI	CCTC	6 cut(s)	69, 72, 267, 339, 404, 480
Mox20I	TGGCCA	1 cut(s)	106
MscI	TGGCCA	1 cut(s)	106
Msp20I	TGGCCA	1 cut(s)	106
MspI	CCGG	1 cut(s)	386
MspR9I	CCNGG	2 cut(s)	386, 466
MvaI	CCWGG	1 cut(s)	466
MvnI	CGCG	1 cut(s)	193
MwoI	GCNNNNNNNGC	3 cut(s)	38, 305, 468
NciI	CCSGG	1 cut(s)	386
NdeII	GATC	2 cut(s)	69, 379
NlaIII	CATG	2 cut(s)	246, 411
NmeAIII	GCCGAG	1 cut(s)	8
NmuCI	GTSAC	1 cut(s)	474
PceI	AGGCCT	2 cut(s)	281, 490
PcsI	WCGNNNNNNNCGW	2 cut(s)	221, 269
PfeI	GAWTC	1 cut(s)	419
PfoI	TCCNGGA	1 cut(s)	464
PkrI	GCNGC	2 cut(s)	368, 461
Psp124BI	GAGCTC	1 cut(s)	473
Psp6I	CCWGG	1 cut(s)	464
PspGI	CCWGG	1 cut(s)	464
PsrI	GAACNNNNNNTAC	2 cut(s)	427, 459
PsuI	RGATCY	1 cut(s)	379
RsaI	GTAC	1 cut(s)	445
RsaNI	GTAC	1 cut(s)	444
SacI	GAGCTC	1 cut(s)	473
SatI	GCNGC	2 cut(s)	367, 460
Sau3AI	GATC	2 cut(s)	69, 379
ScrFI	CCNGG	2 cut(s)	386, 466
SduI	GDGCHC	2 cut(s)	87, 473
SfaNI	GCATC	3 cut(s)	50, 161, 433
Sse9I	AATT	2 cut(s)	114, 233
SseBI	AGGCCT	2 cut(s)	281, 490
SsiI	CCGC	2 cut(s)	343, 400
SstI	GAGCTC	1 cut(s)	473
StuI	AGGCCT	2 cut(s)	281, 490
StyD4I	CCNGG	2 cut(s)	384, 464
TaaI	ACNGT	1 cut(s)	336
TaiI	ACGT	3 cut(s)	266, 443, 523
TaqI	TCGA	3 cut(s)	72, 95, 272
TasI	AATT	2 cut(s)	114, 233
TatI	WGTACW	1 cut(s)	443
TfiI	GAWTC	1 cut(s)	419
TseFI	GTSAC	1 cut(s)	474
TseI	GCWGC	2 cut(s)	366, 459
Tsp45I	GTSAC	1 cut(s)	474
TspGWI	ACGGA	1 cut(s)	125
XapI	RAATTY	1 cut(s)	114
XmiI	GTMKAC	1 cut(s)	349
ZraI	GACGTC	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.