Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0007696

Physical Location & Seq

Genomic Coordinates Reverse (-)

3429904 .. 3448909

Gene Structure 19006 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00335880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGTTGGAGTTTACCCGGTATTCATTGATGCTTACTTTTAACTTCGAGCACGGCCCCACTTCAACCGCACGCCTCCGCCTCCTTTGTGGAGCTCAAGCTTTGAGACCACTTAGACATCCACCGCTCGCCGCCGCCTCCGTCGTCCACTTGGAAATTCCGAGACCCATTTGTGCCGTCTTCGTGTGGGACGGTGACCAAGGAGGAATGGGACACTACGATCACCGTGTCGGGAGGCGATGGTTACGAGCTGTCACGGGGCGGCAAGCACAAAGGAGCTCGATGAGTATTTTCTTAAAGCTGCCGGTGCTTGATTTTAAGGGATCTTCAACATATGAGGAATTTCTGTATAACGTCTCCAGGAAGGTGAAAATGAAGGCACAGGATGAGGCAGAAATAGCATGCATGTTGTTACAATTCCATCGTTGTCCTCTTGTTGTGCCAAAGGAAATAGTACGGGTATTAGTGTTGAAAGGCGAGGAGGAATATGGGTCAACACTATGGCCGACCCATGATCCAAAATTGAAATCGACGGATCCATCGGCACAATCCAAATCTCTTGCATTAATTTCAAATCCTAATCCTTTTCGCTATGATTTCATTGTTGAAAATGAAAAATTGATGCTAGATACCGTGACTGGTCTCGAACTAAAACAAAGGCAGCTTCCATTAATCCCCGTCGTCGTTTTTCTTGCCTTTCTAACTTGGCGGAGTATGCCTAAACTAGCTCCGCCTTCCATAGGAATTGGGTTTGTTGCGGTGGGAATCGATCGAATAGAGAAGGTGAGGGCCTCGCCAATCGAGTTCGAAGAAAAGAGAAAGACCAGGTCGGGAACAACGGGGCAAAGTCAGCGTGGTAAAGACAGGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

289

Amino Acids

32.7

Weight (kDa)

9.69

Isoelectric Point (pI)

52.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33260 AT1G33260 AT4G10390
fragaria_vesca	FvH4_5g10090
malus_domestica	MD06G1128000.v1.1 MD14G1143800.v1.1
prunus_persica	Prupe.5G137800_v2.0.a1
pyrus_communis	pycom06g11830 pycom14g11920
rosa_chinensis	RchiOBHm_Chr7g0188181
rosa_laevigata	RLG00000004721
rosa_multiflora	Rmu_co8339873.1_g000001 Rmu_sc0004001.1_g000014 Rmu_sc0032708.1_g000001 Rmu_sc0033897.1_g000001
rosa_roxburghii	Rroxscaffold_1G00031530 Rroxscaffold_3G00266690 Rroxscaffold_5G00335880
rosa_rugosa	Rorug06G0489000
rosa_samantha	Rh7AG093200 Rh7BG094700 Rh7CG094500 Rh7DG095100
rosa_wichuraiana	Rw7G008040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	124
AciI	CCGC	9 cut(s)	66, 76, 122, 129, 132, 259, 706, 728, 755
AclWI	GGATC	4 cut(s)	328, 506, 527, 540
AcoI	YGGCCR	1 cut(s)	500
AcsI	RAATTY	2 cut(s)	153, 338
AfaI	GTAC	1 cut(s)	453
AfiI	CCNNNNNNNGG	1 cut(s)	737
AgsI	TTSAA	6 cut(s)	63, 327, 469, 523, 570, 605
AjnI	CCWGG	2 cut(s)	356, 821
AluBI	AGCT	7 cut(s)	92, 98, 248, 276, 298, 661, 725
AluI	AGCT	7 cut(s)	92, 98, 248, 276, 298, 661, 725
Alw21I	GWGCWC	3 cut(s)	51, 94, 278
Alw26I	GTCTC	4 cut(s)	97, 154, 358, 644
AlwI	GGATC	4 cut(s)	328, 506, 527, 540
AoxI	GGCC	3 cut(s)	52, 500, 786
ApeKI	GCWGC	2 cut(s)	298, 658
ApoI	RAATTY	2 cut(s)	153, 338
AseI	ATTAAT	2 cut(s)	563, 668
AspS9I	GGNCC	2 cut(s)	53, 786
AsuC2I	CCSGG	1 cut(s)	16
AsuHPI	GGTGA	4 cut(s)	203, 212, 376, 793
AsuII	TTCGAA	1 cut(s)	804
BamHI	GGATCC	1 cut(s)	532
BanII	GRGCYC	2 cut(s)	94, 278
BbsI	GAAGAC	1 cut(s)	169
Bbv12I	GWGCWC	3 cut(s)	51, 94, 278
BbvI	GCAGC	2 cut(s)	285, 670
BccI	CCATC	3 cut(s)	231, 426, 544
BceAI	ACGGC	2 cut(s)	67, 158
BciT130I	CCWGG	2 cut(s)	358, 823
BcnI	CCSGG	1 cut(s)	16
BcoDI	GTCTC	4 cut(s)	97, 154, 358, 644
BfaI	CTAG	2 cut(s)	623, 722
BisI	GCNGC	5 cut(s)	129, 132, 260, 299, 659
BlsI	GCNGC	5 cut(s)	130, 133, 261, 300, 660
Bme1390I	CCNGG	3 cut(s)	16, 358, 823
BmgT120I	GGNCC	2 cut(s)	53, 786
BmiI	GGNNCC	2 cut(s)	55, 534
BmrFI	CCNGG	3 cut(s)	16, 358, 823
BmsI	GCATC	2 cut(s)	18, 609
BpiI	GAAGAC	1 cut(s)	169
BpmI	CTGGAG	1 cut(s)	340
Bpu14I	TTCGAA	1 cut(s)	804
BpuEI	CTTGAG	1 cut(s)	78
BpuMI	CCSGG	1 cut(s)	16
Bsa29I	ATCGAT	1 cut(s)	765
BsaI	GGTCTC	3 cut(s)	97, 154, 644
BsaJI	CCNNGG	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	1 cut(s)	737
Bse118I	RCCGGY	1 cut(s)	301
Bse1I	ACTGG	1 cut(s)	640
BseBI	CCWGG	2 cut(s)	358, 823
BseCI	ATCGAT	1 cut(s)	765
BseDI	CCNNGG	1 cut(s)	196
BseGI	GGATG	2 cut(s)	115, 388
BseLI	CCNNNNNNNGG	1 cut(s)	737
BseNI	ACTGG	1 cut(s)	640
BseRI	GAGGAG	1 cut(s)	491
BseXI	GCAGC	2 cut(s)	285, 670
Bsh1285I	CGRYCG	1 cut(s)	769
BshFI	GGCC	3 cut(s)	54, 502, 788
BshVI	ATCGAT	1 cut(s)	765
BsiEI	CGRYCG	1 cut(s)	769
BsiHKAI	GWGCWC	3 cut(s)	51, 94, 278
BsiSI	CCGG	2 cut(s)	16, 302
BslFI	GGGAC	2 cut(s)	200, 222
BslI	CCNNNNNNNGG	1 cut(s)	737
BsmAI	GTCTC	4 cut(s)	97, 154, 358, 644
BsmBI	CGTCTC	1 cut(s)	358
BsmFI	GGGAC	2 cut(s)	200, 222
BsnI	GGCC	3 cut(s)	54, 502, 788
Bso31I	GGTCTC	3 cut(s)	97, 154, 644
Bsp119I	TTCGAA	1 cut(s)	804
Bsp1286I	GDGCHC	3 cut(s)	51, 94, 278
Bsp143I	GATC	5 cut(s)	217, 320, 511, 532, 766
BspACI	CCGC	9 cut(s)	66, 76, 122, 129, 132, 259, 706, 728, 755
BspANI	GGCC	3 cut(s)	54, 502, 788
BspDI	ATCGAT	1 cut(s)	765
BspHI	TCATGA	1 cut(s)	866
BspLI	GGNNCC	2 cut(s)	55, 534
BspPI	GGATC	4 cut(s)	328, 506, 527, 540
BspT104I	TTCGAA	1 cut(s)	804
BspTNI	GGTCTC	3 cut(s)	97, 154, 644
BsrBI	CCGCTC	1 cut(s)	124
BsrFI	RCCGGY	1 cut(s)	301
BsrI	ACTGG	1 cut(s)	640
BssAI	RCCGGY	1 cut(s)	301
BssECI	CCNNGG	1 cut(s)	196
BssMI	GATC	5 cut(s)	217, 320, 511, 532, 766
BssT1I	CCWWGG	1 cut(s)	196
Bst2UI	CCWGG	2 cut(s)	358, 823
Bst4CI	ACNGT	3 cut(s)	191, 224, 631
BstBI	TTCGAA	1 cut(s)	804
BstC8I	GCNNGC	4 cut(s)	70, 126, 264, 400
BstDEI	CTNAG	1 cut(s)	110
BstEII	GGTNACC	1 cut(s)	191
BstENI	CCTNNNNNAGG	1 cut(s)	735
BstF5I	GGATG	2 cut(s)	115, 388
BstKTI	GATC	5 cut(s)	220, 323, 514, 535, 769
BstMAI	GTCTC	4 cut(s)	97, 154, 358, 644
BstMBI	GATC	5 cut(s)	217, 320, 511, 532, 766
BstMCI	CGRYCG	1 cut(s)	769
BstMWI	GCNNNNNNNGC	4 cut(s)	304, 395, 712, 847
BstNI	CCWGG	2 cut(s)	358, 823
BstNSI	RCATGY	2 cut(s)	402, 406
BstPI	GGTNACC	1 cut(s)	191
BstSCI	CCNGG	3 cut(s)	14, 356, 821
BstV1I	GCAGC	2 cut(s)	285, 670
BstV2I	GAAGAC	1 cut(s)	169
BstX2I	RGATCY	2 cut(s)	320, 532
BstYI	RGATCY	2 cut(s)	320, 532
Bsu15I	ATCGAT	1 cut(s)	765
BsuRI	GGCC	3 cut(s)	54, 502, 788
BsuTUI	ATCGAT	1 cut(s)	765
BtgZI	GCGATG	1 cut(s)	250
BtsCI	GGATG	2 cut(s)	115, 388
Cac8I	GCNNGC	4 cut(s)	70, 126, 264, 400
CciI	TCATGA	1 cut(s)	866
Cfr10I	RCCGGY	1 cut(s)	301
Cfr13I	GGNCC	2 cut(s)	53, 786
ClaI	ATCGAT	1 cut(s)	765
CsiI	ACCWGGT	1 cut(s)	821
Csp6I	GTAC	1 cut(s)	452
CviAII	CATG	4 cut(s)	399, 403, 509, 867
CviQI	GTAC	1 cut(s)	452
DdeI	CTNAG	1 cut(s)	110
DpnI	GATC	5 cut(s)	219, 322, 513, 534, 768
DpnII	GATC	5 cut(s)	217, 320, 511, 532, 766
EaeI	YGGCCR	1 cut(s)	500
EciI	GGCGGA	3 cut(s)	65, 717, 721
Ecl136II	GAGCTC	2 cut(s)	92, 276
Eco130I	CCWWGG	1 cut(s)	196
Eco24I	GRGCYC	2 cut(s)	94, 278
Eco31I	GGTCTC	3 cut(s)	97, 154, 644
Eco53kI	GAGCTC	2 cut(s)	92, 276
Eco91I	GGTNACC	1 cut(s)	191
EcoICRI	GAGCTC	2 cut(s)	92, 276
EcoNI	CCTNNNNNAGG	1 cut(s)	735
EcoO109I	RGGNCCY	1 cut(s)	786
EcoO65I	GGTNACC	1 cut(s)	191
EcoRII	CCWGG	2 cut(s)	356, 821
EcoT14I	CCWWGG	1 cut(s)	196
EcoT22I	ATGCAT	1 cut(s)	404
EcoT38I	GRGCYC	2 cut(s)	94, 278
ErhI	CCWWGG	1 cut(s)	196
Esp3I	CGTCTC	1 cut(s)	358
FaeI	CATG	4 cut(s)	402, 406, 512, 870
FaqI	GGGAC	2 cut(s)	200, 222
FatI	CATG	4 cut(s)	398, 402, 508, 866
FauNDI	CATATG	1 cut(s)	331
Fnu4HI	GCNGC	5 cut(s)	129, 132, 260, 299, 659
FokI	GGATG	2 cut(s)	102, 395
FriOI	GRGCYC	2 cut(s)	94, 278
Fsp4HI	GCNGC	5 cut(s)	129, 132, 260, 299, 659
FspBI	CTAG	2 cut(s)	623, 722
GluI	GCNGC	5 cut(s)	129, 132, 260, 299, 659
GsuI	CTGGAG	1 cut(s)	340
HaeIII	GGCC	3 cut(s)	54, 502, 788
HapII	CCGG	2 cut(s)	16, 302
Hin1II	CATG	4 cut(s)	402, 406, 512, 870
HincII	GTYRAC	1 cut(s)	492
HindII	GTYRAC	1 cut(s)	492
HindIII	AAGCTT	1 cut(s)	96
HinfI	GANTC	1 cut(s)	762
HpaII	CCGG	2 cut(s)	16, 302
HphI	GGTGA	4 cut(s)	203, 212, 376, 793
Hpy166II	GTNNAC	3 cut(s)	12, 145, 492
Hpy188I	TCNGA	1 cut(s)	159
Hpy188III	TCNNGA	4 cut(s)	229, 641, 828, 867
Hpy8I	GTNNAC	3 cut(s)	12, 145, 492
Hpy99I	CGWCG	4 cut(s)	143, 532, 680, 683
HpyAV	CCTTC	4 cut(s)	355, 367, 741, 772
HpyCH4III	ACNGT	3 cut(s)	191, 224, 631
HpyCH4IV	ACGT	1 cut(s)	351
HpyCH4V	TGCA	2 cut(s)	402, 560
HpyF10VI	GCNNNNNNNGC	4 cut(s)	304, 395, 712, 847
HpyF3I	CTNAG	1 cut(s)	110
HpySE526I	ACGT	1 cut(s)	351
Hsp92II	CATG	4 cut(s)	402, 406, 512, 870
Kzo9I	GATC	5 cut(s)	217, 320, 511, 532, 766
LmnI	GCTCC	3 cut(s)	89, 273, 730
LpnPI	CCDG	9 cut(s)	29, 315, 343, 365, 370, 621, 808, 835, 847
Lsp1109I	GCAGC	2 cut(s)	285, 670
LweI	GCATC	2 cut(s)	18, 609
MabI	ACCWGGT	1 cut(s)	821
MaeI	CTAG	2 cut(s)	623, 722
MaeII	ACGT	1 cut(s)	351
MaeIII	GTNAC	5 cut(s)	191, 240, 250, 408, 631
MalI	GATC	5 cut(s)	219, 322, 513, 534, 768
MbiI	CCGCTC	1 cut(s)	124
MboI	GATC	5 cut(s)	217, 320, 511, 532, 766
MboII	GAAGA	3 cut(s)	169, 315, 818
MflI	RGATCY	2 cut(s)	320, 532
MhlI	GDGCHC	3 cut(s)	51, 94, 278
MluCI	AATT	7 cut(s)	153, 338, 413, 518, 564, 614, 741
Mph1103I	ATGCAT	1 cut(s)	404
MseI	TTAA	5 cut(s)	39, 293, 315, 563, 668
MspI	CCGG	2 cut(s)	16, 302
MspR9I	CCNGG	3 cut(s)	16, 358, 823
MvaI	CCWGG	2 cut(s)	358, 823
MwoI	GCNNNNNNNGC	4 cut(s)	304, 395, 712, 847
NciI	CCSGG	1 cut(s)	16
NdeI	CATATG	1 cut(s)	331
NdeII	GATC	5 cut(s)	217, 320, 511, 532, 766
NlaIII	CATG	4 cut(s)	402, 406, 512, 870
NlaIV	GGNNCC	2 cut(s)	55, 534
NmuCI	GTSAC	3 cut(s)	191, 250, 631
NsiI	ATGCAT	1 cut(s)	404
NspI	RCATGY	2 cut(s)	402, 406
NspV	TTCGAA	1 cut(s)	804
PaeI	GCATGC	1 cut(s)	402
PagI	TCATGA	1 cut(s)	866
PfeI	GAWTC	1 cut(s)	762
PflFI	GACNNNGTC	1 cut(s)	823
PfoI	TCCNGGA	1 cut(s)	356
PkrI	GCNGC	5 cut(s)	130, 133, 261, 300, 660
Ple19I	CGATCG	1 cut(s)	769
PshBI	ATTAAT	2 cut(s)	563, 668
Psp124BI	GAGCTC	2 cut(s)	94, 278
Psp6I	CCWGG	2 cut(s)	356, 821
PspEI	GGTNACC	1 cut(s)	191
PspGI	CCWGG	2 cut(s)	356, 821
PspN4I	GGNNCC	2 cut(s)	55, 534
PspPI	GGNCC	2 cut(s)	53, 786
PsuI	RGATCY	2 cut(s)	320, 532
PsyI	GACNNNGTC	1 cut(s)	823
PvuI	CGATCG	1 cut(s)	769
RsaI	GTAC	1 cut(s)	453
RsaNI	GTAC	1 cut(s)	452
SacI	GAGCTC	2 cut(s)	94, 278
SaqAI	TTAA	5 cut(s)	39, 293, 315, 563, 668
SatI	GCNGC	5 cut(s)	129, 132, 260, 299, 659
Sau3AI	GATC	5 cut(s)	217, 320, 511, 532, 766
Sau96I	GGNCC	2 cut(s)	53, 786
ScrFI	CCNGG	3 cut(s)	16, 358, 823
SduI	GDGCHC	3 cut(s)	51, 94, 278
SexAI	ACCWGGT	1 cut(s)	821
SfaNI	GCATC	2 cut(s)	18, 609
SfuI	TTCGAA	1 cut(s)	804
SmlI	CTYRAG	1 cut(s)	93
SmoI	CTYRAG	1 cut(s)	93
SphI	GCATGC	1 cut(s)	402
Sse9I	AATT	7 cut(s)	153, 338, 413, 518, 564, 614, 741
SsiI	CCGC	9 cut(s)	66, 76, 122, 129, 132, 259, 706, 728, 755
SspMI	CTAG	2 cut(s)	623, 722
SstI	GAGCTC	2 cut(s)	94, 278
StyD4I	CCNGG	3 cut(s)	14, 356, 821
StyI	CCWWGG	1 cut(s)	196
TaaI	ACNGT	3 cut(s)	191, 224, 631
TaiI	ACGT	1 cut(s)	354
TaqI	TCGA	8 cut(s)	45, 278, 527, 642, 765, 769, 798, 804
TasI	AATT	7 cut(s)	153, 338, 413, 518, 564, 614, 741
TauI	GCSGC	3 cut(s)	131, 134, 262
TfiI	GAWTC	1 cut(s)	762
Tru1I	TTAA	5 cut(s)	39, 293, 315, 563, 668
Tru9I	TTAA	5 cut(s)	39, 293, 315, 563, 668
TseFI	GTSAC	3 cut(s)	191, 250, 631
TseI	GCWGC	2 cut(s)	298, 658
Tsp45I	GTSAC	3 cut(s)	191, 250, 631
TspDTI	ATGAA	4 cut(s)	12, 386, 586, 624
TspGWI	ACGGA	2 cut(s)	127, 545
Tth111I	GACNNNGTC	1 cut(s)	823
VspI	ATTAAT	2 cut(s)	563, 668
XagI	CCTNNNNNAGG	1 cut(s)	735
XapI	RAATTY	2 cut(s)	153, 338
XceI	RCATGY	2 cut(s)	402, 406
XspI	CTAG	2 cut(s)	623, 722
Zsp2I	ATGCAT	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.