Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007696

Physical Location & Seq

Genomic Coordinates Reverse (-)

6441596 .. 6443554

Gene Structure 1959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G10390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGCTTGTTTCTTGAATTGTGTTAGATTTGATGTCTCCAAGACGATCACCGACAAACCCACAAGTCAAGGATCTGGTGTGACTTGTTATAACAGCTGGGATGATGTTGAAACTCTCACTTCCAATTTCTCTAGATTGATTGGTTCTGGTGGCTATAGCAGTATCTACATGGCTCGCTTCTCTGGCTCTGATAAAGCGGCTCTCAAGGTTCATGTTAGTAGTCACCGTCTTTATCAAGTCTTTAGACTTGAGCTTGATATTTTGCTTCGTCTTCAACATCCTAACATTGTCAAGCTTCTTGGCTATTTCGATGATTCAGAGGAAAATGGTGCTCTTCTTCTTGAGTATCTTCCTCAAGGAAATCTACAAGAGAAGCTCCAAAGCAATAGCAAGCAAGTCTTGCAATGGAGGAACCGTGTAGCGATTGCGTTACAGTTAGTTCAAGCTATTGAACATATTCATGAGAAATGTAGCCCGCAGATAGTGCACGGGGACATCAAATCTTCCAACGTTCTTCTAGACAAAAACTTTGATTGCAAGCTTTGCGATTTCGGGTCAGCTAAAGTCGGGTTCTCTTCGATGGTTCAGCCTCCTACGATGTCGCCTAGATCTAGACAAGTGAAGATGGTGGGATCTCCAGGTTACACAGACCCTCATTATTTAAGAACCGGGATTGCTTCGAAGAAGATGGATATGTATGGGTTTGGAGTTGTGGTTCTTGAGTTGGTTTCAGGAAAAGAAGCGTTTTCTGCTGAGAGAGGTGAGATGCTGGTGCATATAGCTGCTCCACTTATGAATGAGATTTTGGATTCGAGTGTAGACATTTCAGAGGACAAGGTCAGACAGTTCTTGGACCCGAGGTTGTTAAGGGATAGTCTTGATATCGATGAGGTCAAGACAATGTTGAGTGTTGCTGCGGTCTGTATCAGTAGCAAGCTATCTCTAAGACCTTCGGCTGCTCAAGTAGCGGATACTCTTATAAAGGAAATACCATCATTGAGTTTCCTCGGTTGCGGTAAAGGAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0008150 GO:0009611 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase

Protein Analysis

342

Amino Acids

37.79

Weight (kDa)

6.71

Isoelectric Point (pI)

45.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	43 - 251	4.9e-28	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	44 - 323	3.4e-40	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33260 AT1G33260 AT4G10390
fragaria_vesca	FvH4_5g10090
malus_domestica	MD06G1128000.v1.1 MD14G1143800.v1.1
prunus_persica	Prupe.5G137800_v2.0.a1
pyrus_communis	pycom06g11830 pycom14g11920
rosa_chinensis	RchiOBHm_Chr7g0188181
rosa_laevigata	RLG00000004721
rosa_multiflora	Rmu_co8339873.1_g000001 Rmu_sc0004001.1_g000014 Rmu_sc0032708.1_g000001 Rmu_sc0033897.1_g000001
rosa_roxburghii	Rroxscaffold_1G00031530 Rroxscaffold_3G00266690 Rroxscaffold_5G00335880
rosa_rugosa	Rorug06G0489000
rosa_samantha	Rh7AG093200 Rh7BG094700 Rh7CG094500 Rh7DG095100
rosa_wichuraiana	Rw7G008040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	90, 980
AccI	GTMKAC	1 cut(s)	819
AciI	CCGC	5 cut(s)	197, 476, 917, 968, 1014
AclI	AACGTT	1 cut(s)	510
AclWI	GGATC	2 cut(s)	79, 640
AgsI	TTSAA	5 cut(s)	16, 110, 275, 443, 452
AjnI	CCWGG	1 cut(s)	637
AjuI	GAANNNNNNNTTGG	2 cut(s)	788, 820
AloI	GAACNNNNNNTCC	2 cut(s)	699, 731
AluBI	AGCT	9 cut(s)	96, 253, 295, 376, 446, 541, 560, 782, 937
AluI	AGCT	9 cut(s)	96, 253, 295, 376, 446, 541, 560, 782, 937
Alw21I	GWGCWC	2 cut(s)	334, 489
Alw26I	GTCTC	1 cut(s)	40
Alw44I	GTGCAC	1 cut(s)	485
AlwI	GGATC	2 cut(s)	79, 640
Ama87I	CYCGRG	1 cut(s)	856
ApaLI	GTGCAC	1 cut(s)	485
ApeKI	GCWGC	3 cut(s)	782, 914, 956
ArsI	GACNNNNNNTTYG	2 cut(s)	512, 544
Asp700I	GAANNNNTTC	1 cut(s)	456
AspS9I	GGNCC	1 cut(s)	853
AsuC2I	CCSGG	1 cut(s)	670
AsuHPI	GGTGA	3 cut(s)	40, 215, 773
AsuII	TTCGAA	1 cut(s)	680
AvaI	CYCGRG	1 cut(s)	856
AvaII	GGWCC	1 cut(s)	853
BaeGI	GKGCMC	1 cut(s)	489
BbsI	GAAGAC	1 cut(s)	263
Bbv12I	GWGCWC	2 cut(s)	334, 489
BbvI	GCAGC	3 cut(s)	769, 901, 943
BccI	CCATC	4 cut(s)	574, 619, 682, 1000
BciT130I	CCWGG	1 cut(s)	639
BciVI	GTATCC	1 cut(s)	964
BcnI	CCSGG	1 cut(s)	670
BcoDI	GTCTC	1 cut(s)	40
BfaI	CTAG	4 cut(s)	132, 518, 606, 612
BfmI	CTRYAG	1 cut(s)	154
BfuI	GTATCC	1 cut(s)	964
BglII	AGATCT	1 cut(s)	608
BisI	GCNGC	4 cut(s)	198, 783, 915, 957
BlsI	GCNGC	4 cut(s)	199, 784, 916, 958
Bme1390I	CCNGG	2 cut(s)	639, 670
Bme18I	GGWCC	1 cut(s)	853
BmeT110I	CYCGRG	1 cut(s)	856
BmgT120I	GGNCC	1 cut(s)	853
BmiI	GGNNCC	2 cut(s)	413, 855
BmrFI	CCNGG	2 cut(s)	639, 670
BmsI	GCATC	1 cut(s)	756
BpiI	GAAGAC	1 cut(s)	263
BpmI	CTGGAG	1 cut(s)	621
Bpu14I	TTCGAA	1 cut(s)	680
BpuEI	CTTGAG	6 cut(s)	188, 269, 339, 362, 740, 945
BpuMI	CCSGG	1 cut(s)	670
Bsa29I	ATCGAT	1 cut(s)	885
BsaJI	CCNNGG	2 cut(s)	857, 1006
BsaXI	ACNNNNNCTCC	4 cut(s)	400, 430, 699, 729
Bse3DI	GCAATG	1 cut(s)	410
BseBI	CCWGG	1 cut(s)	639
BseCI	ATCGAT	1 cut(s)	885
BseDI	CCNNGG	2 cut(s)	857, 1006
BseGI	GGATG	2 cut(s)	106, 277
BseMI	GCAATG	1 cut(s)	410
BseMII	CTCAG	1 cut(s)	744
BseSI	GKGCMC	1 cut(s)	489
BseXI	GCAGC	3 cut(s)	769, 901, 943
BseYI	CCCAGC	1 cut(s)	96
BshVI	ATCGAT	1 cut(s)	885
BsiHKAI	GWGCWC	2 cut(s)	334, 489
BsiHKCI	CYCGRG	1 cut(s)	856
BsiSI	CCGG	1 cut(s)	669
BslFI	GGGAC	1 cut(s)	506
BsmAI	GTCTC	1 cut(s)	40
BsmFI	GGGAC	1 cut(s)	506
BsoBI	CYCGRG	1 cut(s)	856
Bsp119I	TTCGAA	1 cut(s)	680
Bsp1286I	GDGCHC	2 cut(s)	334, 489
Bsp143I	GATC	4 cut(s)	45, 71, 608, 632
BspACI	CCGC	5 cut(s)	197, 476, 917, 968, 1014
BspCNI	CTCAG	1 cut(s)	745
BspDI	ATCGAT	1 cut(s)	885
BspHI	TCATGA	1 cut(s)	460
BspLI	GGNNCC	2 cut(s)	413, 855
BspPI	GGATC	2 cut(s)	79, 640
BspQI	GCTCTTC	1 cut(s)	339
BspT104I	TTCGAA	1 cut(s)	680
BsrDI	GCAATG	1 cut(s)	410
BssECI	CCNNGG	2 cut(s)	857, 1006
BssMI	GATC	4 cut(s)	45, 71, 608, 632
Bst2UI	CCWGG	1 cut(s)	639
Bst4CI	ACNGT	4 cut(s)	227, 416, 435, 846
Bst6I	CTCTTC	2 cut(s)	339, 580
BstAPI	GCANNNNNTGC	3 cut(s)	400, 484, 543
BstBI	TTCGAA	1 cut(s)	680
BstC8I	GCNNGC	5 cut(s)	175, 392, 476, 539, 935
BstDEI	CTNAG	2 cut(s)	753, 944
BstF5I	GGATG	2 cut(s)	106, 277
BstKTI	GATC	4 cut(s)	48, 74, 611, 635
BstMAI	GTCTC	1 cut(s)	40
BstMBI	GATC	4 cut(s)	45, 71, 608, 632
BstMWI	GCNNNNNNNGC	6 cut(s)	183, 400, 484, 543, 749, 965
BstNI	CCWGG	1 cut(s)	639
BstSCI	CCNGG	2 cut(s)	637, 668
BstSFI	CTRYAG	1 cut(s)	154
BstSLI	GKGCMC	1 cut(s)	489
BstV1I	GCAGC	3 cut(s)	769, 901, 943
BstV2I	GAAGAC	1 cut(s)	263
BstX2I	RGATCY	3 cut(s)	71, 608, 632
BstYI	RGATCY	3 cut(s)	71, 608, 632
Bsu15I	ATCGAT	1 cut(s)	885
BsuI	GTATCC	1 cut(s)	964
BsuTUI	ATCGAT	1 cut(s)	885
BtsCI	GGATG	2 cut(s)	106, 277
Cac8I	GCNNGC	5 cut(s)	175, 392, 476, 539, 935
CciI	TCATGA	1 cut(s)	460
Cfr13I	GGNCC	1 cut(s)	853
ClaI	ATCGAT	1 cut(s)	885
CviAII	CATG	3 cut(s)	169, 212, 461
DdeI	CTNAG	2 cut(s)	753, 944
DpnI	GATC	4 cut(s)	47, 73, 610, 634
DpnII	GATC	4 cut(s)	45, 71, 608, 632
Eam1104I	CTCTTC	2 cut(s)	339, 580
EarI	CTCTTC	2 cut(s)	339, 580
Eco32I	GATATC	1 cut(s)	883
Eco47I	GGWCC	1 cut(s)	853
Eco88I	CYCGRG	1 cut(s)	856
EcoRII	CCWGG	1 cut(s)	637
EcoRV	GATATC	1 cut(s)	883
FaeI	CATG	3 cut(s)	172, 215, 464
FalI	AAGNNNNNCTT	2 cut(s)	383, 415
FaqI	GGGAC	1 cut(s)	506
FatI	CATG	3 cut(s)	168, 211, 460
FauI	CCCGC	1 cut(s)	483
FblI	GTMKAC	1 cut(s)	819
Fnu4HI	GCNGC	4 cut(s)	198, 783, 915, 957
FokI	GGATG	2 cut(s)	113, 264
Fsp4HI	GCNGC	4 cut(s)	198, 783, 915, 957
FspBI	CTAG	4 cut(s)	132, 518, 606, 612
GluI	GCNGC	4 cut(s)	198, 783, 915, 957
GsaI	CCCAGC	1 cut(s)	100
GsuI	CTGGAG	1 cut(s)	621
HapII	CCGG	1 cut(s)	669
Hin1II	CATG	3 cut(s)	172, 215, 464
HindIII	AAGCTT	2 cut(s)	293, 539
HinfI	GANTC	2 cut(s)	314, 809
HpaII	CCGG	1 cut(s)	669
HphI	GGTGA	3 cut(s)	40, 215, 773
Hpy166II	GTNNAC	2 cut(s)	487, 820
Hpy188I	TCNGA	4 cut(s)	190, 319, 829, 842
Hpy8I	GTNNAC	2 cut(s)	487, 820
HpyAV	CCTTC	1 cut(s)	960
HpyCH4III	ACNGT	4 cut(s)	227, 416, 435, 846
HpyCH4IV	ACGT	1 cut(s)	510
HpyCH4V	TGCA	4 cut(s)	403, 487, 537, 775
HpyF10VI	GCNNNNNNNGC	6 cut(s)	183, 400, 484, 543, 749, 965
HpyF3I	CTNAG	2 cut(s)	753, 944
HpySE526I	ACGT	1 cut(s)	510
Hsp92II	CATG	3 cut(s)	172, 215, 464
Kzo9I	GATC	4 cut(s)	45, 71, 608, 632
LguI	GCTCTTC	1 cut(s)	339
LmnI	GCTCC	2 cut(s)	381, 790
LpnPI	CCDG	9 cut(s)	60, 82, 132, 168, 624, 651, 682, 717, 755
Lsp1109I	GCAGC	3 cut(s)	769, 901, 943
LweI	GCATC	1 cut(s)	756
MaeI	CTAG	4 cut(s)	132, 518, 606, 612
MaeII	ACGT	1 cut(s)	510
MaeIII	GTNAC	4 cut(s)	79, 221, 429, 641
MalI	GATC	4 cut(s)	47, 73, 610, 634
MboI	GATC	4 cut(s)	45, 71, 608, 632
MflI	RGATCY	3 cut(s)	71, 608, 632
MhlI	GDGCHC	2 cut(s)	334, 489
MluCI	AATT	2 cut(s)	16, 124
MmeI	TCCRAC	1 cut(s)	531
MroXI	GAANNNNTTC	1 cut(s)	456
MseI	TTAA	2 cut(s)	662, 866
MslI	CAYNNNNRTG	1 cut(s)	459
MspA1I	CMGCKG	1 cut(s)	96
MspI	CCGG	1 cut(s)	669
MspR9I	CCNGG	2 cut(s)	639, 670
MvaI	CCWGG	1 cut(s)	639
MwoI	GCNNNNNNNGC	6 cut(s)	183, 400, 484, 543, 749, 965
NciI	CCSGG	1 cut(s)	670
NdeII	GATC	4 cut(s)	45, 71, 608, 632
NlaIII	CATG	3 cut(s)	172, 215, 464
NlaIV	GGNNCC	2 cut(s)	413, 855
NmuCI	GTSAC	2 cut(s)	79, 221
NspV	TTCGAA	1 cut(s)	680
PagI	TCATGA	1 cut(s)	460
PciSI	GCTCTTC	1 cut(s)	339
PdmI	GAANNNNTTC	1 cut(s)	456
PfeI	GAWTC	2 cut(s)	314, 809
PflFI	GACNNNGTC	1 cut(s)	836
PkrI	GCNGC	4 cut(s)	199, 784, 916, 958
PsiI	TTATAA	2 cut(s)	90, 980
Psp1406I	AACGTT	1 cut(s)	510
Psp6I	CCWGG	1 cut(s)	637
PspFI	CCCAGC	1 cut(s)	96
PspGI	CCWGG	1 cut(s)	637
PspN4I	GGNNCC	2 cut(s)	413, 855
PspPI	GGNCC	1 cut(s)	853
PsuI	RGATCY	3 cut(s)	71, 608, 632
PsyI	GACNNNGTC	1 cut(s)	836
PvuII	CAGCTG	1 cut(s)	96
RseI	CAYNNNNRTG	1 cut(s)	459
SapI	GCTCTTC	1 cut(s)	339
SaqAI	TTAA	2 cut(s)	662, 866
SatI	GCNGC	4 cut(s)	198, 783, 915, 957
Sau3AI	GATC	4 cut(s)	45, 71, 608, 632
Sau96I	GGNCC	1 cut(s)	853
ScrFI	CCNGG	2 cut(s)	639, 670
SduI	GDGCHC	2 cut(s)	334, 489
SfaNI	GCATC	1 cut(s)	756
SfcI	CTRYAG	1 cut(s)	154
SfuI	TTCGAA	1 cut(s)	680
SinI	GGWCC	1 cut(s)	853
SmiMI	CAYNNNNRTG	1 cut(s)	459
SmlI	CTYRAG	6 cut(s)	203, 248, 341, 354, 719, 960
SmoI	CTYRAG	6 cut(s)	203, 248, 341, 354, 719, 960
Sse9I	AATT	2 cut(s)	16, 124
SsiI	CCGC	5 cut(s)	197, 476, 917, 968, 1014
SspMI	CTAG	4 cut(s)	132, 518, 606, 612
StyD4I	CCNGG	2 cut(s)	637, 668
TaaI	ACNGT	4 cut(s)	227, 416, 435, 846
TaiI	ACGT	1 cut(s)	513
TaqI	TCGA	5 cut(s)	309, 578, 680, 812, 885
TasI	AATT	2 cut(s)	16, 124
TauI	GCSGC	1 cut(s)	200
TfiI	GAWTC	2 cut(s)	314, 809
Tru1I	TTAA	2 cut(s)	662, 866
Tru9I	TTAA	2 cut(s)	662, 866
TseFI	GTSAC	2 cut(s)	79, 221
TseI	GCWGC	3 cut(s)	782, 914, 956
Tsp45I	GTSAC	2 cut(s)	79, 221
TspDTI	ATGAA	3 cut(s)	200, 449, 809
Tth111I	GACNNNGTC	1 cut(s)	836
VneI	GTGCAC	1 cut(s)	485
VpaK11BI	GGWCC	1 cut(s)	853
XbaI	TCTAGA	3 cut(s)	131, 517, 611
XmiI	GTMKAC	1 cut(s)	819
XmnI	GAANNNNTTC	1 cut(s)	456
XspI	CTAG	4 cut(s)	132, 518, 606, 612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.