Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0007696

Physical Location & Seq

Genomic Coordinates Forward (+)

44548651 .. 44562258

Gene Structure 13608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00031530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGTAGAAGATCAAGTTGAAGCTGAAACTTTAGAGCAAGATTCGTTAGATGTGGTGAAAAGAAATGACTGCAAAGGAGCAATGTTTAAGGCGCAAGAAGCTCTAGATCTCTTCCTCGCGCTAAAAATTCAGCAATCGATTACGGTGACTGAAATACTTTATGCAGCAAGTCGACTATTTTTTATACCGATAAGGATAGACCTCAAAGGAACTATTATAGAGTTCTTGGGACCGACTATTGTGATGTGGATACTCGAAGAAAAATTTCAGAAAACTCGTCAAACTGATGGTAATAAGGGTTTTGAACCTCTAACTGCTACCGCAGCAAAAACCGATGCGGGAGCCGTTACAATGTATGATGCCGGGTTTGATGGTTGTGGTAGATTTCGGTGCAAGTGCACACTTGGTGGTAGTATGAACTTTGAAGCACCAACTGCTAGTGCGGTTAGTGATAAGGCCAAGGAACCTAGGAGATCTCTAAGGAAAGGAAGAATGCTGATCAAAGTGGTCATGATGATAATGGCGGTGGTGATGAGGCCAACAAACCTAAGAGATCCGTTGTCCTCTGTTGTGCCAAAGGAAATAGTACGGGTATTAGTGTTGATAGGTGAGAAGGAATATGGGTCAACACTATGGCCGACCCATGATCCAAAATTGAAATCGACGGATCCATCAAAGACCGGCGTGACACGTTGTGTAAGAAAAAGTGACATAGATGTTGCACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

242

Amino Acids

26.85

Weight (kDa)

8.75

Isoelectric Point (pI)

34.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33260 AT1G33260 AT4G10390
fragaria_vesca	FvH4_5g10090
malus_domestica	MD06G1128000.v1.1 MD14G1143800.v1.1
prunus_persica	Prupe.5G137800_v2.0.a1
pyrus_communis	pycom06g11830 pycom14g11920
rosa_chinensis	RchiOBHm_Chr7g0188181
rosa_laevigata	RLG00000004721
rosa_multiflora	Rmu_co8339873.1_g000001 Rmu_sc0004001.1_g000014 Rmu_sc0032708.1_g000001 Rmu_sc0033897.1_g000001
rosa_roxburghii	Rroxscaffold_1G00031530 Rroxscaffold_3G00266690 Rroxscaffold_5G00335880
rosa_rugosa	Rorug06G0489000
rosa_samantha	Rh7AG093200 Rh7BG094700 Rh7CG094500 Rh7DG095100
rosa_wichuraiana	Rw7G008040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	172
AccII	CGCG	1 cut(s)	119
AciI	CCGC	4 cut(s)	321, 338, 443, 524
AclWI	GGATC	4 cut(s)	548, 641, 662, 675
AcoI	YGGCCR	1 cut(s)	635
AcsI	RAATTY	2 cut(s)	126, 263
AdeI	CACNNNGTG	2 cut(s)	407, 695
AfaI	GTAC	1 cut(s)	588
AflIII	ACRYGT	1 cut(s)	689
AgsI	TTSAA	4 cut(s)	20, 305, 425, 658
AluBI	AGCT	2 cut(s)	23, 101
AluI	AGCT	2 cut(s)	23, 101
Alw21I	GWGCWC	1 cut(s)	401
Alw44I	GTGCAC	1 cut(s)	397
AlwI	GGATC	4 cut(s)	548, 641, 662, 675
AoxI	GGCC	3 cut(s)	456, 536, 635
ApaLI	GTGCAC	1 cut(s)	397
ApeKI	GCWGC	2 cut(s)	164, 323
ApoI	RAATTY	2 cut(s)	126, 263
Asp700I	GAANNNNTTC	1 cut(s)	264
AspA2I	CCTAGG	1 cut(s)	467
AspLEI	GCGC	2 cut(s)	94, 121
AspS9I	GGNCC	1 cut(s)	230
AsuC2I	CCSGG	1 cut(s)	364
AsuHPI	GGTGA	4 cut(s)	67, 157, 541, 620
AvaII	GGWCC	1 cut(s)	230
AvrII	CCTAGG	1 cut(s)	467
BaeGI	GKGCMC	1 cut(s)	401
BamHI	GGATCC	1 cut(s)	667
Bbv12I	GWGCWC	1 cut(s)	401
BbvI	GCAGC	2 cut(s)	176, 335
BccI	CCATC	3 cut(s)	281, 365, 679
BceAI	ACGGC	1 cut(s)	329
BciVI	GTATCC	1 cut(s)	243
BclI	TGATCA	1 cut(s)	498
BcnI	CCSGG	1 cut(s)	364
BfaI	CTAG	3 cut(s)	104, 438, 468
BfuI	GTATCC	1 cut(s)	243
BglII	AGATCT	2 cut(s)	106, 473
BisI	GCNGC	2 cut(s)	165, 324
BlnI	CCTAGG	1 cut(s)	467
BlsI	GCNGC	2 cut(s)	166, 325
Bme1390I	CCNGG	1 cut(s)	364
Bme18I	GGWCC	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	230
BmiI	GGNNCC	4 cut(s)	231, 343, 465, 669
BmrFI	CCNGG	1 cut(s)	364
BmsI	GCATC	2 cut(s)	325, 349
BpuMI	CCSGG	1 cut(s)	364
Bsa29I	ATCGAT	1 cut(s)	137
BsaJI	CCNNGG	2 cut(s)	459, 467
Bse118I	RCCGGY	1 cut(s)	680
Bse3DI	GCAATG	1 cut(s)	87
BseCI	ATCGAT	1 cut(s)	137
BseDI	CCNNGG	2 cut(s)	459, 467
BseMI	GCAATG	1 cut(s)	87
BseSI	GKGCMC	1 cut(s)	401
BseXI	GCAGC	2 cut(s)	176, 335
Bsh1236I	CGCG	1 cut(s)	119
BshFI	GGCC	3 cut(s)	458, 538, 637
BshVI	ATCGAT	1 cut(s)	137
BsiHKAI	GWGCWC	1 cut(s)	401
BsiSI	CCGG	2 cut(s)	363, 681
BslFI	GGGAC	1 cut(s)	243
BsmFI	GGGAC	1 cut(s)	243
BsmI	GAATGC	1 cut(s)	498
BsnI	GGCC	3 cut(s)	458, 538, 637
Bsp1286I	GDGCHC	1 cut(s)	401
Bsp143I	GATC	7 cut(s)	10, 106, 473, 498, 553, 646, 667
BspACI	CCGC	4 cut(s)	321, 338, 443, 524
BspANI	GGCC	3 cut(s)	458, 538, 637
BspDI	ATCGAT	1 cut(s)	137
BspFNI	CGCG	1 cut(s)	119
BspHI	TCATGA	1 cut(s)	510
BspLI	GGNNCC	4 cut(s)	231, 343, 465, 669
BspPI	GGATC	4 cut(s)	548, 641, 662, 675
BsrDI	GCAATG	1 cut(s)	87
BsrFI	RCCGGY	1 cut(s)	680
BssAI	RCCGGY	1 cut(s)	680
BssECI	CCNNGG	2 cut(s)	459, 467
BssMI	GATC	7 cut(s)	10, 106, 473, 498, 553, 646, 667
BssT1I	CCWWGG	2 cut(s)	459, 467
Bst4CI	ACNGT	1 cut(s)	145
Bst6I	CTCTTC	1 cut(s)	116
BstAPI	GCANNNNNTGC	1 cut(s)	434
BstDEI	CTNAG	2 cut(s)	479, 548
BstFNI	CGCG	1 cut(s)	119
BstHHI	GCGC	2 cut(s)	94, 121
BstKTI	GATC	7 cut(s)	13, 109, 476, 501, 556, 649, 670
BstMBI	GATC	7 cut(s)	10, 106, 473, 498, 553, 646, 667
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 323, 434
BstSCI	CCNGG	1 cut(s)	362
BstSLI	GKGCMC	1 cut(s)	401
BstUI	CGCG	1 cut(s)	119
BstV1I	GCAGC	2 cut(s)	176, 335
BstX2I	RGATCY	4 cut(s)	106, 473, 553, 667
BstYI	RGATCY	4 cut(s)	106, 473, 553, 667
Bsu15I	ATCGAT	1 cut(s)	137
BsuI	GTATCC	1 cut(s)	243
BsuRI	GGCC	3 cut(s)	458, 538, 637
BsuTUI	ATCGAT	1 cut(s)	137
CciI	TCATGA	1 cut(s)	510
CfoI	GCGC	2 cut(s)	94, 121
Cfr10I	RCCGGY	1 cut(s)	680
Cfr13I	GGNCC	1 cut(s)	230
ClaI	ATCGAT	1 cut(s)	137
Csp6I	GTAC	1 cut(s)	587
CviAII	CATG	2 cut(s)	511, 644
CviJI	RGCY	6 cut(s)	23, 101, 344, 458, 538, 637
CviKI_1	RGCY	6 cut(s)	23, 101, 344, 458, 538, 637
CviQI	GTAC	1 cut(s)	587
DdeI	CTNAG	2 cut(s)	479, 548
DpnI	GATC	7 cut(s)	12, 108, 475, 500, 555, 648, 669
DpnII	GATC	7 cut(s)	10, 106, 473, 498, 553, 646, 667
DraIII	CACNNNGTG	2 cut(s)	407, 695
EaeI	YGGCCR	1 cut(s)	635
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
Eco130I	CCWWGG	2 cut(s)	459, 467
Eco47I	GGWCC	1 cut(s)	230
EcoT14I	CCWWGG	2 cut(s)	459, 467
ErhI	CCWWGG	2 cut(s)	459, 467
FaeI	CATG	2 cut(s)	514, 647
FaqI	GGGAC	1 cut(s)	243
FatI	CATG	2 cut(s)	510, 643
FauI	CCCGC	1 cut(s)	331
FbaI	TGATCA	1 cut(s)	498
FblI	GTMKAC	1 cut(s)	172
Fnu4HI	GCNGC	2 cut(s)	165, 324
Fsp4HI	GCNGC	2 cut(s)	165, 324
FspBI	CTAG	3 cut(s)	104, 438, 468
GlaI	GCGC	2 cut(s)	93, 120
GluI	GCNGC	2 cut(s)	165, 324
HaeIII	GGCC	3 cut(s)	458, 538, 637
HapII	CCGG	2 cut(s)	363, 681
HhaI	GCGC	2 cut(s)	94, 121
Hin1II	CATG	2 cut(s)	514, 647
Hin6I	GCGC	2 cut(s)	92, 119
HinP1I	GCGC	2 cut(s)	92, 119
HincII	GTYRAC	2 cut(s)	173, 627
HindII	GTYRAC	2 cut(s)	173, 627
HinfI	GANTC	1 cut(s)	41
HpaII	CCGG	2 cut(s)	363, 681
HphI	GGTGA	4 cut(s)	67, 157, 541, 620
Hpy166II	GTNNAC	3 cut(s)	173, 399, 627
Hpy188I	TCNGA	1 cut(s)	270
Hpy188III	TCNNGA	2 cut(s)	104, 511
Hpy8I	GTNNAC	3 cut(s)	173, 399, 627
Hpy99I	CGWCG	1 cut(s)	667
HpyAV	CCTTC	1 cut(s)	607
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	1 cut(s)	691
HpyCH4V	TGCA	5 cut(s)	72, 164, 393, 399, 722
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 323, 434
HpyF3I	CTNAG	2 cut(s)	479, 548
HpySE526I	ACGT	1 cut(s)	691
Hsp92II	CATG	2 cut(s)	514, 647
HspAI	GCGC	2 cut(s)	92, 119
Ksp22I	TGATCA	1 cut(s)	498
Kzo9I	GATC	7 cut(s)	10, 106, 473, 498, 553, 646, 667
LmnI	GCTCC	2 cut(s)	77, 341
LpnPI	CCDG	2 cut(s)	376, 694
Lsp1109I	GCAGC	2 cut(s)	176, 335
LweI	GCATC	2 cut(s)	325, 349
MaeI	CTAG	3 cut(s)	104, 438, 468
MaeII	ACGT	1 cut(s)	691
MaeIII	GTNAC	4 cut(s)	145, 346, 685, 707
MalI	GATC	7 cut(s)	12, 108, 475, 500, 555, 648, 669
MboI	GATC	7 cut(s)	10, 106, 473, 498, 553, 646, 667
MboII	GAAGA	4 cut(s)	20, 103, 269, 501
MflI	RGATCY	4 cut(s)	106, 473, 553, 667
MhlI	GDGCHC	1 cut(s)	401
MluCI	AATT	3 cut(s)	126, 263, 653
MnlI	CCTC	5 cut(s)	125, 212, 318, 528, 574
MroXI	GAANNNNTTC	1 cut(s)	264
MseI	TTAA	1 cut(s)	87
MspI	CCGG	2 cut(s)	363, 681
MspR9I	CCNGG	1 cut(s)	364
Mva1269I	GAATGC	1 cut(s)	498
MvnI	CGCG	1 cut(s)	119
MwoI	GCNNNNNNNGC	3 cut(s)	98, 323, 434
NciI	CCSGG	1 cut(s)	364
NdeII	GATC	7 cut(s)	10, 106, 473, 498, 553, 646, 667
NlaIII	CATG	2 cut(s)	514, 647
NlaIV	GGNNCC	4 cut(s)	231, 343, 465, 669
NmuCI	GTSAC	3 cut(s)	145, 685, 707
PagI	TCATGA	1 cut(s)	510
PctI	GAATGC	1 cut(s)	498
PdmI	GAANNNNTTC	1 cut(s)	264
PfeI	GAWTC	1 cut(s)	41
PkrI	GCNGC	2 cut(s)	166, 325
PspN4I	GGNNCC	4 cut(s)	231, 343, 465, 669
PspPI	GGNCC	1 cut(s)	230
PsuI	RGATCY	4 cut(s)	106, 473, 553, 667
RsaI	GTAC	1 cut(s)	588
RsaNI	GTAC	1 cut(s)	587
SalI	GTCGAC	1 cut(s)	171
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	2 cut(s)	165, 324
Sau3AI	GATC	7 cut(s)	10, 106, 473, 498, 553, 646, 667
Sau96I	GGNCC	1 cut(s)	230
ScrFI	CCNGG	1 cut(s)	364
SduI	GDGCHC	1 cut(s)	401
SetI	ASST	8 cut(s)	25, 103, 204, 310, 469, 549, 610, 694
SfaNI	GCATC	2 cut(s)	325, 349
SinI	GGWCC	1 cut(s)	230
Sse9I	AATT	3 cut(s)	126, 263, 653
SsiI	CCGC	4 cut(s)	321, 338, 443, 524
SspMI	CTAG	3 cut(s)	104, 438, 468
StyD4I	CCNGG	1 cut(s)	362
StyI	CCWWGG	2 cut(s)	459, 467
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	1 cut(s)	694
TaqI	TCGA	4 cut(s)	137, 172, 255, 662
TaqII	GACCGA	1 cut(s)	247
TasI	AATT	3 cut(s)	126, 263, 653
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TseFI	GTSAC	3 cut(s)	145, 685, 707
TseI	GCWGC	2 cut(s)	164, 323
Tsp45I	GTSAC	3 cut(s)	145, 685, 707
TspDTI	ATGAA	1 cut(s)	431
TspGWI	ACGGA	2 cut(s)	546, 680
VneI	GTGCAC	1 cut(s)	397
VpaK11BI	GGWCC	1 cut(s)	230
XapI	RAATTY	2 cut(s)	126, 263
XbaI	TCTAGA	1 cut(s)	103
XmaJI	CCTAGG	1 cut(s)	467
XmiI	GTMKAC	1 cut(s)	172
XmnI	GAANNNNTTC	1 cut(s)	264
XspI	CTAG	3 cut(s)	104, 438, 468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.