Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8339873.1

Orthogroup ID

OG0007696

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1004

Gene Structure 1004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8339873.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 581 bp

aaccgccattttcactctctccctcttgttttcctcgttattcttcactttctccgaggcttctcgccccataatcaccgactcttccccttcttcttcccccaccaaccctccaaccttgcccttaaaaacccaccagggcatccacgttgaccctaaaatcgtcacactcctaataaccttctctgccctactgacctccctgattgtgatcatggctctcttcaagtgcttcggcttcaaactgaaacgaaaccagaaccgtgtgggaactgcaatggaaatcactaaccccgaaactgttgacgaagatgtgaataagaagagtgagaattgcgtgaggaagttcagttgggatgagattgctagattcaccaacaacttcttaaaggtgattggatccggaggctacagcaccgtctacttggctcagtcgccggattccggtcacggattttgggctattaagatccacaacggcagcgagcgtctcaatcaggttttcaagcaagaactggacatccttcttcgtctcggccatcaaagcatcgtcaagcttctcggttattgtgatgatcgag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0008150 GO:0009611 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase

Protein Analysis

193

Amino Acids

21.57

Weight (kDa)

8.79

Isoelectric Point (pI)

32.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007696)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33260 AT1G33260 AT4G10390
fragaria_vesca	FvH4_5g10090
malus_domestica	MD06G1128000.v1.1 MD14G1143800.v1.1
prunus_persica	Prupe.5G137800_v2.0.a1
pyrus_communis	pycom06g11830 pycom14g11920
rosa_chinensis	RchiOBHm_Chr7g0188181
rosa_laevigata	RLG00000004721
rosa_multiflora	Rmu_co8339873.1_g000001 Rmu_sc0004001.1_g000014 Rmu_sc0032708.1_g000001 Rmu_sc0033897.1_g000001
rosa_roxburghii	Rroxscaffold_1G00031530 Rroxscaffold_3G00266690 Rroxscaffold_5G00335880
rosa_rugosa	Rorug06G0489000
rosa_samantha	Rh7AG093200 Rh7BG094700 Rh7CG094500 Rh7DG095100
rosa_wichuraiana	Rw7G008040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	421
AccIII	TCCGGA	1 cut(s)	402
AciI	CCGC	1 cut(s)	4
AclWI	GGATC	3 cut(s)	394, 407, 464
AcoI	YGGCCR	1 cut(s)	536
AfiI	CCNNNNNNNGG	1 cut(s)	444
AgsI	TTSAA	3 cut(s)	227, 242, 506
AjnI	CCWGG	1 cut(s)	136
AloI	GAACNNNNNNTCC	2 cut(s)	505, 537
AluBI	AGCT	1 cut(s)	557
AluI	AGCT	1 cut(s)	557
Alw26I	GTCTC	2 cut(s)	495, 537
AlwI	GGATC	3 cut(s)	394, 407, 464
Aor13HI	TCCGGA	1 cut(s)	402
AoxI	GGCC	1 cut(s)	536
ApeKI	GCWGC	1 cut(s)	481
AsuHPI	GGTGA	3 cut(s)	68, 365, 404
BamHI	GGATCC	1 cut(s)	399
BbvI	GCAGC	1 cut(s)	493
BccI	CCATC	1 cut(s)	547
BceAI	ACGGC	1 cut(s)	494
BciT130I	CCWGG	1 cut(s)	138
BclI	TGATCA	1 cut(s)	211
BcoDI	GTCTC	2 cut(s)	495, 537
BfaI	CTAG	1 cut(s)	367
BfmI	CTRYAG	1 cut(s)	410
BisI	GCNGC	1 cut(s)	482
BlsI	GCNGC	1 cut(s)	483
Bme1390I	CCNGG	1 cut(s)	138
BmiI	GGNNCC	1 cut(s)	401
BmrFI	CCNGG	1 cut(s)	138
BmsI	GCATC	2 cut(s)	151, 556
BsaBI	GATNNNNATC	1 cut(s)	210
BsaJI	CCNNGG	2 cut(s)	55, 137
BsaWI	WCCGGW	2 cut(s)	402, 444
BsaXI	ACNNNNNCTCC	2 cut(s)	95, 125
Bsc4I	CCNNNNNNNGG	1 cut(s)	444
Bse1I	ACTGG	1 cut(s)	520
Bse3DI	GCAATG	1 cut(s)	283
Bse8I	GATNNNNATC	1 cut(s)	210
BseAI	TCCGGA	1 cut(s)	402
BseBI	CCWGG	1 cut(s)	138
BseDI	CCNNGG	2 cut(s)	55, 137
BseGI	GGATG	3 cut(s)	142, 362, 520
BseJI	GATNNNNATC	1 cut(s)	210
BseLI	CCNNNNNNNGG	1 cut(s)	444
BseMI	GCAATG	1 cut(s)	283
BseMII	CTCAG	1 cut(s)	444
BseNI	ACTGG	1 cut(s)	520
BseXI	GCAGC	1 cut(s)	493
BshFI	GGCC	1 cut(s)	538
BsiSI	CCGG	3 cut(s)	403, 438, 445
BslI	CCNNNNNNNGG	1 cut(s)	444
BsmAI	GTCTC	2 cut(s)	495, 537
BsmBI	CGTCTC	2 cut(s)	495, 537
BsnI	GGCC	1 cut(s)	538
Bsp13I	TCCGGA	1 cut(s)	402
Bsp143I	GATC	4 cut(s)	211, 399, 469, 575
BspACI	CCGC	1 cut(s)	4
BspANI	GGCC	1 cut(s)	538
BspCNI	CTCAG	1 cut(s)	443
BspEI	TCCGGA	1 cut(s)	402
BspLI	GGNNCC	1 cut(s)	401
BspPI	GGATC	3 cut(s)	394, 407, 464
BsrDI	GCAATG	1 cut(s)	283
BsrI	ACTGG	1 cut(s)	520
BssECI	CCNNGG	2 cut(s)	55, 137
BssMI	GATC	4 cut(s)	211, 399, 469, 575
Bst2UI	CCWGG	1 cut(s)	138
Bst4CI	ACNGT	3 cut(s)	264, 302, 419
Bst6I	CTCTTC	3 cut(s)	89, 228, 318
BstC8I	GCNNGC	1 cut(s)	486
BstDEI	CTNAG	1 cut(s)	430
BstF5I	GGATG	3 cut(s)	142, 362, 520
BstKTI	GATC	4 cut(s)	214, 402, 472, 578
BstMAI	GTCTC	2 cut(s)	495, 537
BstMBI	GATC	4 cut(s)	211, 399, 469, 575
BstMWI	GCNNNNNNNGC	1 cut(s)	544
BstNI	CCWGG	1 cut(s)	138
BstSCI	CCNGG	1 cut(s)	136
BstSFI	CTRYAG	1 cut(s)	410
BstV1I	GCAGC	1 cut(s)	493
BstX2I	RGATCY	2 cut(s)	399, 469
BstYI	RGATCY	2 cut(s)	399, 469
BsuRI	GGCC	1 cut(s)	538
BtsCI	GGATG	3 cut(s)	142, 362, 520
Cac8I	GCNNGC	1 cut(s)	486
CseI	GACGC	1 cut(s)	477
CviAII	CATG	1 cut(s)	215
CviJI	RGCY	8 cut(s)	60, 219, 238, 409, 429, 462, 538, 557
CviKI_1	RGCY	8 cut(s)	60, 219, 238, 409, 429, 462, 538, 557
DdeI	CTNAG	1 cut(s)	430
DpnI	GATC	4 cut(s)	213, 401, 471, 577
DpnII	GATC	4 cut(s)	211, 399, 469, 575
EaeI	YGGCCR	1 cut(s)	536
Eam1104I	CTCTTC	3 cut(s)	89, 228, 318
EarI	CTCTTC	3 cut(s)	89, 228, 318
EcoRII	CCWGG	1 cut(s)	136
Esp3I	CGTCTC	2 cut(s)	495, 537
FaeI	CATG	1 cut(s)	218
FaiI	YATR	2 cut(s)	72, 216
FatI	CATG	1 cut(s)	214
FbaI	TGATCA	1 cut(s)	211
FblI	GTMKAC	1 cut(s)	421
Fnu4HI	GCNGC	1 cut(s)	482
FokI	GGATG	3 cut(s)	129, 369, 507
Fsp4HI	GCNGC	1 cut(s)	482
FspBI	CTAG	1 cut(s)	367
GluI	GCNGC	1 cut(s)	482
HaeIII	GGCC	1 cut(s)	538
HapII	CCGG	3 cut(s)	403, 438, 445
HgaI	GACGC	1 cut(s)	477
Hin1II	CATG	1 cut(s)	218
HincII	GTYRAC	2 cut(s)	152, 305
HindII	GTYRAC	2 cut(s)	152, 305
HindIII	AAGCTT	1 cut(s)	555
HinfI	GANTC	3 cut(s)	81, 370, 441
HpaII	CCGG	3 cut(s)	403, 438, 445
HphI	GGTGA	3 cut(s)	68, 365, 404
Hpy166II	GTNNAC	3 cut(s)	152, 305, 422
Hpy188I	TCNGA	1 cut(s)	56
Hpy188III	TCNNGA	1 cut(s)	403
Hpy8I	GTNNAC	3 cut(s)	152, 305, 422
HpyAV	CCTTC	3 cut(s)	100, 191, 534
HpyCH4III	ACNGT	3 cut(s)	264, 302, 419
HpyCH4IV	ACGT	1 cut(s)	148
HpyCH4V	TGCA	1 cut(s)	276
HpyF10VI	GCNNNNNNNGC	1 cut(s)	544
HpyF3I	CTNAG	1 cut(s)	430
HpySE526I	ACGT	1 cut(s)	148
Hsp92II	CATG	1 cut(s)	218
Kpn2I	TCCGGA	1 cut(s)	402
Ksp22I	TGATCA	1 cut(s)	211
Kzo9I	GATC	4 cut(s)	211, 399, 469, 575
LpnPI	CCDG	9 cut(s)	123, 150, 216, 270, 416, 451, 458, 483, 501
Lsp1109I	GCAGC	1 cut(s)	493
LweI	GCATC	2 cut(s)	151, 556
MaeI	CTAG	1 cut(s)	367
MaeII	ACGT	1 cut(s)	148
MaeIII	GTNAC	2 cut(s)	164, 447
MalI	GATC	4 cut(s)	213, 401, 471, 577
MboI	GATC	4 cut(s)	211, 399, 469, 575
MboII	GAAGA	8 cut(s)	35, 76, 85, 88, 215, 321, 335, 519
MflI	RGATCY	2 cut(s)	399, 469
MluCI	AATT	1 cut(s)	332
MlyI	GAGTC	1 cut(s)	75
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	7 cut(s)	33, 44, 50, 121, 209, 334, 399
MroI	TCCGGA	1 cut(s)	402
MseI	TTAA	3 cut(s)	126, 387, 466
MspI	CCGG	3 cut(s)	403, 438, 445
MspR9I	CCNGG	1 cut(s)	138
MvaI	CCWGG	1 cut(s)	138
MwoI	GCNNNNNNNGC	1 cut(s)	544
NdeII	GATC	4 cut(s)	211, 399, 469, 575
NlaIII	CATG	1 cut(s)	218
NlaIV	GGNNCC	1 cut(s)	401
NmeAIII	GCCGAG	1 cut(s)	514
NmuCI	GTSAC	2 cut(s)	164, 447
PfeI	GAWTC	2 cut(s)	370, 441
PkrI	GCNGC	1 cut(s)	483
PleI	GAGTC	1 cut(s)	75
PpsI	GAGTC	1 cut(s)	75
Psp6I	CCWGG	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	136
PspN4I	GGNNCC	1 cut(s)	401
PsuI	RGATCY	2 cut(s)	399, 469
SaqAI	TTAA	3 cut(s)	126, 387, 466
SatI	GCNGC	1 cut(s)	482
Sau3AI	GATC	4 cut(s)	211, 399, 469, 575
SchI	GAGTC	1 cut(s)	75
ScrFI	CCNGG	1 cut(s)	138
SetI	ASST	7 cut(s)	120, 151, 183, 201, 394, 502, 559
SfaNI	GCATC	2 cut(s)	151, 556
SfcI	CTRYAG	1 cut(s)	410
Sse9I	AATT	1 cut(s)	332
SsiI	CCGC	1 cut(s)	4
SspMI	CTAG	1 cut(s)	367
StyD4I	CCNGG	1 cut(s)	136
TaaI	ACNGT	3 cut(s)	264, 302, 419
TaiI	ACGT	1 cut(s)	151
TaqI	TCGA	1 cut(s)	578
TasI	AATT	1 cut(s)	332
TfiI	GAWTC	2 cut(s)	370, 441
Tru1I	TTAA	3 cut(s)	126, 387, 466
Tru9I	TTAA	3 cut(s)	126, 387, 466
TseFI	GTSAC	2 cut(s)	164, 447
TseI	GCWGC	1 cut(s)	481
Tsp45I	GTSAC	2 cut(s)	164, 447
TspGWI	ACGGA	1 cut(s)	466
XmiI	GTMKAC	1 cut(s)	421
XspI	CTAG	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.