Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007606

Physical Location & Seq

Genomic Coordinates Reverse (-)

12124237 .. 12126481

Gene Structure 2245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G33430.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGAGGGCGAAAGCTGCTTCGGGGAAAGCCATAATAGTGCTTTGTCTAGCCAGCTTTCTTGCAGGCTCACTGTTCATGAGTCGAACTTTGAGTCGCTCTTACATACCTGAAGAAGAAGATCACCATCTCACAAAGCATTTGTCCAAACATTTAGAGATTCAAAAGGACTGCGATGAACATAAACGCAAATTGATAGAAAGCAAATCCAGAGACATAATAGGAGAAGTATCGAGAACTCACCAAGCAGTAAAATCATTGGAGAGAACAATGTCAACATTGGAGATGGAGTTAGCAGCAGCACGTACCAGCGATAGAAGCAGTGAGTTCTGGAGCGAACGGTCGGCGAAAAACCAGAGCCGTCTGCAGAAAGTGTTTGCAGTGATAGGCATTAACACAGCATTCAGCAGCAAGAAAAGACGTGACTCGGTGAGACAAACGTGGATGCCAACAGGAGAAAAGCTAAAGAAAATCGAGAAAGAGAAAGGGATTGTTGTAAGGTTTGTGATAGGACACAGTGCAACACCAGGAGGAGTATTAGATAAAGCCATAGATGAAGAAGATTCAGAGCATAAAGATTTCTTAAGACTAAAACACATTGAAGGATATCACCAACTCTCGACAAAGACAAGACTGTACTTCTCAACAGCAACTGCAATGTATGACGCAGAGTTCTACGTGAAAGTGGATGATGATGTTCATGTCAATTTAGGTATGCTTGTTACAACACTTGCGAGATATCAATCAAGACCAAGGATTTACATTGGATGCATGAAGTCTGGTCCTGTTCTTTCACAAAAAGGAGTGAAGTACCACGAGCCAGAGTTTTGGAAATTTGGAGAAGAAGGTAACAAATACTTTAGGCATGCAACAGGTCAAATTTACGCAATCTCTAAAGACTTAGCTACATATATCTCCACTAACCAAGGAATACTACACCGGTACGCGAACGAGGATGTGTCGTTAGGAGCATGGATGTTAGGGTTAGAAGTGGAGCATGTGGACGAGAGGTCAATGTGTTGTGGAACTCCACCTGATTGTCAATGGAAAGCACAAGCTGGTAACGTATGTGCTGCGTCGTTCGATTGGTCTTGCAGCGGGATTTGTAAGTCCGTTGACCGGATGGCTCGTGTGCATCGAGCTTGTGCTGAAGGAGACACTCCTCTAGCTAATTTTCGCTTCTTCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T RRM_1

Protein Analysis

395

Amino Acids

44.73

Weight (kDa)

8.85

Isoelectric Point (pI)

45.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4094	PF13334	7 - 103	8.6e-25	Domain of unknown function (DUF4094)
Galactosyl_T	PF01762	138 - 342	2.6e-42	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007606)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33430 AT1G33430 AT1G33430
fragaria_vesca	FvH4_2g00210 FvH4_2g00210
malus_domestica	MD10G1001400.v1.1
prunus_persica	Prupe.8G002000_v2.0.a1 Prupe.8G002000_v2.0.a1 Prupe.8G002000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0249501
rosa_laevigata	RLG00000015575
rosa_multiflora	Rmu_co8377267.1_g000001 Rmu_sc0022339.1_g000002 Rmu_ssc0000407.1_g000007
rosa_roxburghii	Rroxscaffold_7G00217620
rosa_rugosa	Rorug05G0493100 Rorug05G0493100 Rorug05G0493100 Rorug05G0493100
rosa_samantha	Rh6AG002700 Rh6BG007400 Rh6CG001700 Rh6DG001700
rosa_wichuraiana	Rw6G000310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	944
AciI	CCGC	1 cut(s)	1095
AcsI	RAATTY	2 cut(s)	830, 876
AcuI	CTGAAG	2 cut(s)	129, 1167
AfaI	GTAC	4 cut(s)	304, 635, 809, 941
AfiI	CCNNNNNNNGG	1 cut(s)	1116
AflII	CTTAAG	1 cut(s)	580
AgeI	ACCGGT	1 cut(s)	936
AgsI	TTSAA	2 cut(s)	161, 599
AhdI	GACNNNNNGTC	1 cut(s)	1006
AjiI	CACGTC	1 cut(s)	419
AjnI	CCWGG	1 cut(s)	523
AluBI	AGCT	7 cut(s)	14, 54, 460, 902, 1055, 1139, 1166
AluI	AGCT	7 cut(s)	14, 54, 460, 902, 1055, 1139, 1166
Alw26I	GTCTC	3 cut(s)	204, 424, 1146
AlwNI	CAGNNNCTG	1 cut(s)	650
ApeKI	GCWGC	6 cut(s)	14, 293, 296, 405, 1070, 1092
ApoI	RAATTY	2 cut(s)	830, 876
ArsI	GACNNNNNNTTYG	4 cut(s)	76, 108, 125, 157
AsiGI	ACCGGT	1 cut(s)	936
AspS9I	GGNCC	1 cut(s)	779
AsuHPI	GGTGA	4 cut(s)	113, 230, 439, 599
AvaII	GGWCC	1 cut(s)	779
BauI	CACGAG	2 cut(s)	812, 1125
BbvI	GCAGC	5 cut(s)	305, 308, 417, 1057, 1104
BccI	CCATC	3 cut(s)	132, 277, 1114
BceAI	ACGGC	1 cut(s)	342
BciT130I	CCWGG	1 cut(s)	525
BcoDI	GTCTC	3 cut(s)	204, 424, 1146
BfaI	CTAG	2 cut(s)	47, 1163
BfmI	CTRYAG	1 cut(s)	362
BfrI	CTTAAG	1 cut(s)	580
BisI	GCNGC	6 cut(s)	15, 294, 297, 406, 1071, 1093
BlsI	GCNGC	6 cut(s)	16, 295, 298, 407, 1072, 1094
Bme1390I	CCNGG	1 cut(s)	525
Bme18I	GGWCC	1 cut(s)	779
BmeRI	GACNNNNNGTC	1 cut(s)	1006
BmgBI	CACGTC	1 cut(s)	419
BmgT120I	GGNCC	1 cut(s)	779
BmrFI	CCNGG	1 cut(s)	525
BmsI	GCATC	3 cut(s)	432, 755, 1141
BpmI	CTGGAG	1 cut(s)	349
BsaAI	YACGTR	2 cut(s)	302, 676
BsaBI	GATNNNNATC	2 cut(s)	123, 739
BsaJI	CCNNGG	2 cut(s)	749, 922
BsaWI	WCCGGW	2 cut(s)	936, 1116
BsaXI	ACNNNNNCTCC	2 cut(s)	272, 302
Bsc4I	CCNNNNNNNGG	1 cut(s)	1116
Bse118I	RCCGGY	1 cut(s)	936
Bse3DI	GCAATG	1 cut(s)	660
Bse8I	GATNNNNATC	2 cut(s)	123, 739
BseBI	CCWGG	1 cut(s)	525
BseDI	CCNNGG	2 cut(s)	749, 922
BseGI	GGATG	6 cut(s)	447, 691, 770, 958, 978, 1125
BseJI	GATNNNNATC	2 cut(s)	123, 739
BseLI	CCNNNNNNNGG	1 cut(s)	1116
BseMI	GCAATG	1 cut(s)	660
BseRI	GAGGAG	2 cut(s)	543, 1149
BseXI	GCAGC	5 cut(s)	305, 308, 417, 1057, 1104
Bsh1236I	CGCG	1 cut(s)	944
Bsh1285I	CGRYCG	1 cut(s)	341
BshTI	ACCGGT	1 cut(s)	936
BsiEI	CGRYCG	1 cut(s)	341
BsiSI	CCGG	2 cut(s)	937, 1117
BslI	CCNNNNNNNGG	1 cut(s)	1116
BsmAI	GTCTC	3 cut(s)	204, 424, 1146
BsmI	GAATGC	1 cut(s)	398
Bsp143I	GATC	1 cut(s)	118
BspACI	CCGC	1 cut(s)	1095
BspFNI	CGCG	1 cut(s)	944
BspHI	TCATGA	1 cut(s)	75
BspMAI	CTGCAG	1 cut(s)	366
BspTI	CTTAAG	1 cut(s)	580
BsrDI	GCAATG	1 cut(s)	660
BsrFI	RCCGGY	1 cut(s)	936
BssAI	RCCGGY	1 cut(s)	936
BssECI	CCNNGG	2 cut(s)	749, 922
BssMI	GATC	1 cut(s)	118
BssSI	CACGAG	2 cut(s)	812, 1125
BssT1I	CCWWGG	2 cut(s)	749, 922
Bst2BI	CACGAG	2 cut(s)	812, 1125
Bst2UI	CCWGG	1 cut(s)	525
Bst4CI	ACNGT	4 cut(s)	72, 339, 515, 633
BstAFI	CTTAAG	1 cut(s)	580
BstBAI	YACGTR	2 cut(s)	302, 676
BstC8I	GCNNGC	3 cut(s)	52, 64, 864
BstDEI	CTNAG	1 cut(s)	898
BstF5I	GGATG	6 cut(s)	447, 691, 770, 958, 978, 1125
BstFNI	CGCG	1 cut(s)	944
BstKTI	GATC	1 cut(s)	121
BstMAI	GTCTC	3 cut(s)	204, 424, 1146
BstMBI	GATC	1 cut(s)	118
BstMCI	CGRYCG	1 cut(s)	341
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 315
BstNI	CCWGG	1 cut(s)	525
BstNSI	RCATGY	2 cut(s)	866, 998
BstSCI	CCNGG	1 cut(s)	523
BstSFI	CTRYAG	1 cut(s)	362
BstUI	CGCG	1 cut(s)	944
BstV1I	GCAGC	5 cut(s)	305, 308, 417, 1057, 1104
BstXI	CCANNNNNNTGG	1 cut(s)	825
BtgZI	GCGATG	1 cut(s)	186
BtrI	CACGTC	1 cut(s)	419
BtsCI	GGATG	6 cut(s)	447, 691, 770, 958, 978, 1125
BtsI	GCAGTG	2 cut(s)	325, 384
BtsIMutI	CAGTG	4 cut(s)	68, 325, 384, 520
Cac8I	GCNNGC	3 cut(s)	52, 64, 864
CaiI	CAGNNNCTG	1 cut(s)	650
CciI	TCATGA	1 cut(s)	75
Cfr10I	RCCGGY	1 cut(s)	936
Cfr13I	GGNCC	1 cut(s)	779
CseI	GACGC	2 cut(s)	671, 1062
Csp6I	GTAC	4 cut(s)	303, 634, 808, 940
CspAI	ACCGGT	1 cut(s)	936
CviAII	CATG	6 cut(s)	76, 698, 769, 863, 969, 995
CviQI	GTAC	4 cut(s)	303, 634, 808, 940
DdeI	CTNAG	1 cut(s)	898
DpnI	GATC	1 cut(s)	120
DpnII	GATC	1 cut(s)	118
DriI	GACNNNNNGTC	1 cut(s)	1006
Eam1105I	GACNNNNNGTC	1 cut(s)	1006
Eco130I	CCWWGG	2 cut(s)	749, 922
Eco32I	GATATC	2 cut(s)	605, 737
Eco47I	GGWCC	1 cut(s)	779
Eco57I	CTGAAG	2 cut(s)	129, 1167
EcoRII	CCWGG	1 cut(s)	523
EcoRV	GATATC	2 cut(s)	605, 737
EcoT14I	CCWWGG	2 cut(s)	749, 922
EcoT22I	ATGCAT	1 cut(s)	770
ErhI	CCWWGG	2 cut(s)	749, 922
FaeI	CATG	6 cut(s)	79, 701, 772, 866, 972, 998
FatI	CATG	6 cut(s)	75, 697, 768, 862, 968, 994
FauI	CCCGC	1 cut(s)	1088
Fnu4HI	GCNGC	6 cut(s)	15, 294, 297, 406, 1071, 1093
FokI	GGATG	6 cut(s)	454, 698, 777, 965, 985, 1132
Fsp4HI	GCNGC	6 cut(s)	15, 294, 297, 406, 1071, 1093
FspBI	CTAG	2 cut(s)	47, 1163
GluI	GCNGC	6 cut(s)	15, 294, 297, 406, 1071, 1093
GsuI	CTGGAG	1 cut(s)	349
HapII	CCGG	2 cut(s)	937, 1117
HgaI	GACGC	2 cut(s)	671, 1062
Hin1II	CATG	6 cut(s)	79, 701, 772, 866, 972, 998
HincII	GTYRAC	2 cut(s)	273, 1114
HindII	GTYRAC	2 cut(s)	273, 1114
HinfI	GANTC	5 cut(s)	79, 91, 157, 422, 560
HpaII	CCGG	2 cut(s)	937, 1117
HphI	GGTGA	4 cut(s)	113, 230, 439, 599
Hpy166II	GTNNAC	3 cut(s)	273, 1000, 1114
Hpy188I	TCNGA	2 cut(s)	565, 1187
Hpy188III	TCNNGA	7 cut(s)	76, 207, 231, 328, 472, 616, 744
Hpy8I	GTNNAC	3 cut(s)	273, 1000, 1114
Hpy99I	CGWCG	1 cut(s)	1078
HpyAV	CCTTC	3 cut(s)	593, 836, 1142
HpyCH4III	ACNGT	4 cut(s)	72, 339, 515, 633
HpyCH4IV	ACGT	5 cut(s)	301, 418, 437, 675, 1062
HpyCH4V	TGCA	9 cut(s)	62, 364, 377, 518, 653, 768, 866, 1092, 1132
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 315
HpyF3I	CTNAG	1 cut(s)	898
HpySE526I	ACGT	5 cut(s)	301, 418, 437, 675, 1062
Hsp92II	CATG	6 cut(s)	79, 701, 772, 866, 972, 998
Kzo9I	GATC	1 cut(s)	118
LmnI	GCTCC	3 cut(s)	330, 965, 991
Lsp1109I	GCAGC	5 cut(s)	305, 308, 417, 1057, 1104
LweI	GCATC	3 cut(s)	432, 755, 1141
MaeI	CTAG	2 cut(s)	47, 1163
MaeII	ACGT	5 cut(s)	301, 418, 437, 675, 1062
MaeIII	GTNAC	4 cut(s)	419, 718, 845, 1058
MalI	GATC	1 cut(s)	120
MboI	GATC	1 cut(s)	118
MboII	GAAGA	7 cut(s)	122, 125, 128, 566, 569, 851, 1171
MluCI	AATT	5 cut(s)	188, 703, 830, 876, 1168
MlyI	GAGTC	3 cut(s)	88, 100, 416
MnlI	CCTC	4 cut(s)	521, 943, 999, 1170
Mph1103I	ATGCAT	1 cut(s)	770
MseI	TTAA	2 cut(s)	390, 581
MslI	CAYNNNNRTG	1 cut(s)	35
MspA1I	CMGCKG	1 cut(s)	1095
MspCI	CTTAAG	1 cut(s)	580
MspI	CCGG	2 cut(s)	937, 1117
MspR9I	CCNGG	1 cut(s)	525
Mva1269I	GAATGC	1 cut(s)	398
MvaI	CCWGG	1 cut(s)	525
MvnI	CGCG	1 cut(s)	944
MwoI	GCNNNNNNNGC	2 cut(s)	14, 315
NdeII	GATC	1 cut(s)	118
NlaIII	CATG	6 cut(s)	79, 701, 772, 866, 972, 998
NmuCI	GTSAC	1 cut(s)	419
NsiI	ATGCAT	1 cut(s)	770
NspI	RCATGY	2 cut(s)	866, 998
PaeI	GCATGC	1 cut(s)	866
PagI	TCATGA	1 cut(s)	75
PcsI	WCGNNNNNNNCGW	1 cut(s)	1132
PctI	GAATGC	1 cut(s)	398
PfeI	GAWTC	2 cut(s)	157, 560
PinAI	ACCGGT	1 cut(s)	936
PkrI	GCNGC	6 cut(s)	16, 295, 298, 407, 1072, 1094
PleI	GAGTC	3 cut(s)	87, 99, 416
PpsI	GAGTC	3 cut(s)	87, 99, 416
Ppu21I	YACGTR	2 cut(s)	302, 676
Psp6I	CCWGG	1 cut(s)	523
PspGI	CCWGG	1 cut(s)	523
PspPI	GGNCC	1 cut(s)	779
PstI	CTGCAG	1 cut(s)	366
PstNI	CAGNNNCTG	1 cut(s)	650
RsaI	GTAC	4 cut(s)	304, 635, 809, 941
RsaNI	GTAC	4 cut(s)	303, 634, 808, 940
RseI	CAYNNNNRTG	1 cut(s)	35
SaqAI	TTAA	2 cut(s)	390, 581
SatI	GCNGC	6 cut(s)	15, 294, 297, 406, 1071, 1093
Sau3AI	GATC	1 cut(s)	118
Sau96I	GGNCC	1 cut(s)	779
SchI	GAGTC	3 cut(s)	88, 100, 416
ScrFI	CCNGG	1 cut(s)	525
SfaNI	GCATC	3 cut(s)	432, 755, 1141
SfcI	CTRYAG	1 cut(s)	362
SinI	GGWCC	1 cut(s)	779
SmiMI	CAYNNNNRTG	1 cut(s)	35
SmlI	CTYRAG	1 cut(s)	580
SmoI	CTYRAG	1 cut(s)	580
SphI	GCATGC	1 cut(s)	866
Sse9I	AATT	5 cut(s)	188, 703, 830, 876, 1168
SsiI	CCGC	1 cut(s)	1095
SspMI	CTAG	2 cut(s)	47, 1163
StyD4I	CCNGG	1 cut(s)	523
StyI	CCWWGG	2 cut(s)	749, 922
TaaI	ACNGT	4 cut(s)	72, 339, 515, 633
TaiI	ACGT	5 cut(s)	304, 421, 440, 678, 1065
TaqI	TCGA	6 cut(s)	82, 230, 471, 617, 1080, 1135
TasI	AATT	5 cut(s)	188, 703, 830, 876, 1168
TatI	WGTACW	1 cut(s)	633
TfiI	GAWTC	2 cut(s)	157, 560
Tru1I	TTAA	2 cut(s)	390, 581
Tru9I	TTAA	2 cut(s)	390, 581
TscAI	CASTG	4 cut(s)	75, 325, 384, 520
TseFI	GTSAC	1 cut(s)	419
TseI	GCWGC	6 cut(s)	14, 293, 296, 405, 1070, 1092
Tsp45I	GTSAC	1 cut(s)	419
TspDTI	ATGAA	5 cut(s)	64, 189, 567, 686, 785
TspGWI	ACGGA	1 cut(s)	1099
TspRI	CASTG	4 cut(s)	75, 325, 384, 520
Vha464I	CTTAAG	1 cut(s)	580
VpaK11BI	GGWCC	1 cut(s)	779
XapI	RAATTY	2 cut(s)	830, 876
XceI	RCATGY	2 cut(s)	866, 998
XspI	CTAG	2 cut(s)	47, 1163
Zsp2I	ATGCAT	1 cut(s)	770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.