RLG00000015575

Belongs to the glycosyltransferase 31 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
67983759 .. 67985707
1949 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015575

Sequence Viewer

Length: 1260 bp
ATGAGGGGGAAACAGGTTTCAGGAAAGGCGATGCTGATTCTATGTTTTGCAAGTTTTTTTGCAGGATCACTGTTCAGTACTACAAGCCGCACATGGAGTAGTACTAGTACTAGTCTAGATGGTGATGATGATCAACCTAATGGCGGCCGTGAAGCTCATCCATTTCCCATCGTTTCCAAGTACCACATCCACAACCACCTAGACGAAACAGCCAATTCCAAAGGGGCAGCAGCACTAGTCACACAAACTAATTGCAATGATGATCACAAGCGAAAACTGGTTGAAGGAAAATCTGGTGATGATATTATGGGGGAGGTGGCAAAGACTCATCAAGCTATCAAATCACTGGATAGGACAATTTCAACACTGGAGATGGAATTGGCGGCAGCTCGAGCATCAAACCAGAGAATGAGTTCAACATCTAAATTTAATCCTAAAAGACAGAAGGCTTTTGTTGTCATCGGAATCAATACCGCCTTTAGCAGCAAGAAACGGCGAAAATCAGTTCGAGAAACCTGGATGCCTACAGGAGGTGAGCTGAATAAGTTGGAGAAGGAGAAAGGGATCATAATACGGTTTGTAATAGGACGGAGCGCGACTCCTGGAGGGTTACTTGACAGAGCGATTCAGGCCGAAGAGGCGGAGCACAACGACTTTCTTAGGCTCAACCATGTGGAGGGCTATCACGAGCTCTCCACCAAGACCCGCCTCTATTTCACCACCGCCATCTCCATTTGGGATGCCGAGTTTTATGTCAAGGTCGACGATGATGTGCATCTCAATCTCGGTACGCTAGCGACTACACTTGCAAGGCACCGGTCCAAACCAGGAATTTACATTGGTTGCATGAAGTCAGGCCCAGTTCTATATCAAAAAGGGGTGAAATATCACGAGCCGGAGTACTGGAAATTCGGGGAAGAAGGGAACAAGTATTTCAGGCATGCCACCGGCCAAATCTATGCCATCTCTAAGGACCTCGCTGCCTACATTTCCGCCAATTTGCCCATATTGCATAGGTATGCGAATGAGGACGTGTCGCTGGGCTCATGGTTTATTGGGCTTGAGATTGAGCACATTGATGAACGTTCCATGTGTTGTGCCACCTCTCCAGATTGTGAACGGATGGCACAAGCGGGGAATGTTTGTGTGGCGTCATTTGACTGGAAGTGTAGCGGGATATGCAACTCGGTTGAGAGGATGAAAGACGTGCATAACTCATGTGGCGAAGCAACTGGAGCTGTTTGGAACCTTGACCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

420

Amino Acids

46.59

Weight (kDa)

7.98

Isoelectric Point (pI)

33.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4094 PF13334 80 - 133 3e-14 Domain of unknown function (DUF4094)
Galactosyl_T PF01762 164 - 360 1.1e-44 Galactosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 813
AccI GTMKAC 1 cut(s) 762
AccII CGCG 1 cut(s) 596
AclI AACGTT 1 cut(s) 1084
AclWI GGATC 2 cut(s) 73, 572
AcoI YGGCCR 2 cut(s) 145, 949
AcsI RAATTY 3 cut(s) 425, 831, 908
AcyI GRCGYC 1 cut(s) 1151
AfaI GTAC 6 cut(s) 79, 103, 109, 182, 790, 902
AfiI CCNNNNNNNGG 3 cut(s) 143, 530, 676
AflIII ACRYGT 1 cut(s) 1032
AgeI ACCGGT 1 cut(s) 816
AgsI TTSAA 3 cut(s) 284, 363, 417
AhlI ACTAGT 3 cut(s) 104, 110, 235
AjiI CACGTC 2 cut(s) 1033, 1207
AjnI CCWGG 3 cut(s) 515, 601, 826
AluBI AGCT 6 cut(s) 155, 335, 389, 538, 691, 1238
AluI AGCT 6 cut(s) 155, 335, 389, 538, 691, 1238
Alw21I GWGCWC 3 cut(s) 648, 693, 1074
AlwI GGATC 2 cut(s) 73, 572
Ama87I CYCGRG 1 cut(s) 390
AoxI GGCC 4 cut(s) 145, 630, 856, 949
ApeKI GCWGC 5 cut(s) 227, 230, 386, 483, 980
ApoI RAATTY 3 cut(s) 425, 831, 908
AsiGI ACCGGT 1 cut(s) 816
Asp700I GAANNNNTTC 1 cut(s) 412
AspLEI GCGC 1 cut(s) 596
AspS9I GGNCC 3 cut(s) 819, 857, 973
AsuHPI GGTGA 5 cut(s) 134, 308, 545, 709, 892
AsuNHI GCTAGC 1 cut(s) 793
AvaI CYCGRG 1 cut(s) 390
AvaII GGWCC 2 cut(s) 819, 973
BanI GGYRCC 1 cut(s) 813
BanII GRGCYC 2 cut(s) 693, 1046
BauI CACGAG 2 cut(s) 686, 890
Bbv12I GWGCWC 3 cut(s) 648, 693, 1074
BbvI GCAGC 5 cut(s) 239, 242, 398, 495, 967
BccI CCATC 6 cut(s) 113, 176, 367, 734, 971, 1117
BceAI ACGGC 2 cut(s) 132, 509
BciT130I CCWGG 3 cut(s) 517, 603, 828
BclI TGATCA 2 cut(s) 130, 262
BcuI ACTAGT 3 cut(s) 104, 110, 235
BfaI CTAG 6 cut(s) 105, 111, 116, 200, 236, 794
BfmI CTRYAG 1 cut(s) 525
BglI GCCNNNNNGGC 1 cut(s) 638
BisI GCNGC 8 cut(s) 88, 145, 228, 231, 384, 387, 484, 981
BlsI GCNGC 8 cut(s) 89, 146, 229, 232, 385, 388, 485, 982
BmcAI AGTACT 4 cut(s) 79, 103, 109, 902
Bme1390I CCNGG 3 cut(s) 517, 603, 828
Bme18I GGWCC 2 cut(s) 819, 973
BmeT110I CYCGRG 1 cut(s) 390
BmgBI CACGTC 2 cut(s) 1033, 1207
BmgT120I GGNCC 3 cut(s) 819, 857, 973
BmiI GGNNCC 2 cut(s) 815, 1247
BmrFI CCNGG 3 cut(s) 517, 603, 828
BmrI ACTGGG 1 cut(s) 854
BmsI GCATC 5 cut(s) 21, 404, 510, 730, 784
BmtI GCTAGC 1 cut(s) 797
BmuI ACTGGG 1 cut(s) 854
BplI GAGNNNNNCTC 2 cut(s) 583, 615
BpmI CTGGAG 4 cut(s) 389, 624, 1092, 1254
BpuEI CTTGAG 1 cut(s) 1082
BsaBI GATNNNNATC 2 cut(s) 129, 774
BsaHI GRCGYC 1 cut(s) 1151
BsaWI WCCGGW 1 cut(s) 816
BsaXI ACNNNNNCTCC 2 cut(s) 677, 707
Bsc4I CCNNNNNNNGG 3 cut(s) 143, 530, 676
Bse118I RCCGGY 2 cut(s) 816, 947
Bse1I ACTGG 7 cut(s) 282, 351, 372, 860, 908, 1166, 1237
Bse3DI GCAATG 1 cut(s) 262
Bse8I GATNNNNATC 2 cut(s) 129, 774
BseBI CCWGG 3 cut(s) 517, 603, 828
BseGI GGATG 6 cut(s) 157, 186, 525, 745, 1128, 1203
BseJI GATNNNNATC 2 cut(s) 129, 774
BseLI CCNNNNNNNGG 3 cut(s) 143, 530, 676
BseMI GCAATG 1 cut(s) 262
BseNI ACTGG 7 cut(s) 282, 351, 372, 860, 908, 1166, 1237
BseX3I CGGCCG 1 cut(s) 145
BseXI GCAGC 5 cut(s) 239, 242, 398, 495, 967
BseYI CCCAGC 1 cut(s) 1039
Bsh1236I CGCG 1 cut(s) 596
Bsh1285I CGRYCG 1 cut(s) 148
BshFI GGCC 4 cut(s) 147, 632, 858, 951
BshNI GGYRCC 1 cut(s) 813
BshTI ACCGGT 1 cut(s) 816
BsiEI CGRYCG 1 cut(s) 148
BsiHKAI GWGCWC 3 cut(s) 648, 693, 1074
BsiHKCI CYCGRG 1 cut(s) 390
BsiSI CCGG 3 cut(s) 817, 896, 948
BslI CCNNNNNNNGG 3 cut(s) 143, 530, 676
BsnI GGCC 4 cut(s) 147, 632, 858, 951
BsoBI CYCGRG 1 cut(s) 390
Bsp1286I GDGCHC 4 cut(s) 648, 693, 1046, 1074
Bsp143I GATC 4 cut(s) 65, 130, 262, 564
BspANI GGCC 4 cut(s) 147, 632, 858, 951
BspFNI CGCG 1 cut(s) 596
BspLI GGNNCC 2 cut(s) 815, 1247
BspOI GCTAGC 1 cut(s) 797
BspPI GGATC 2 cut(s) 73, 572
BspT107I GGYRCC 1 cut(s) 813
BsrDI GCAATG 1 cut(s) 262
BsrFI RCCGGY 2 cut(s) 816, 947
BsrI ACTGG 7 cut(s) 282, 351, 372, 860, 908, 1166, 1237
BssAI RCCGGY 2 cut(s) 816, 947
BssMI GATC 4 cut(s) 65, 130, 262, 564
BssNI GRCGYC 1 cut(s) 1151
BssSI CACGAG 2 cut(s) 686, 890
Bst2BI CACGAG 2 cut(s) 686, 890
Bst2UI CCWGG 3 cut(s) 517, 603, 828
Bst4CI ACNGT 2 cut(s) 72, 576
Bst6I CTCTTC 1 cut(s) 630
BstACI GRCGYC 1 cut(s) 1151
BstC8I GCNNGC 2 cut(s) 795, 942
BstDEI CTNAG 2 cut(s) 659, 969
BstENI CCTNNNNNAGG 1 cut(s) 528
BstF5I GGATG 6 cut(s) 157, 186, 525, 745, 1128, 1203
BstFNI CGCG 1 cut(s) 596
BstHHI GCGC 1 cut(s) 596
BstKTI GATC 4 cut(s) 68, 133, 265, 567
BstMBI GATC 4 cut(s) 65, 130, 262, 564
BstMCI CGRYCG 1 cut(s) 148
BstMWI GCNNNNNNNGC 6 cut(s) 392, 629, 638, 1009, 1179, 1235
BstNI CCWGG 3 cut(s) 517, 603, 828
BstNSI RCATGY 1 cut(s) 944
BstSCI CCNGG 3 cut(s) 515, 601, 826
BstSFI CTRYAG 1 cut(s) 525
BstUI CGCG 1 cut(s) 596
BstV1I GCAGC 5 cut(s) 239, 242, 398, 495, 967
BstZI CGGCCG 1 cut(s) 145
BsuRI GGCC 4 cut(s) 147, 632, 858, 951
BtgZI GCGATG 1 cut(s) 44
BtrI CACGTC 2 cut(s) 1033, 1207
BtsCI GGATG 6 cut(s) 157, 186, 525, 745, 1128, 1203
BtsIMutI CAGTG 3 cut(s) 68, 344, 365
Cac8I GCNNGC 2 cut(s) 795, 942
CfoI GCGC 1 cut(s) 596
Cfr10I RCCGGY 2 cut(s) 816, 947
Cfr13I GGNCC 3 cut(s) 819, 857, 973
CseI GACGC 1 cut(s) 1140
Csp6I GTAC 6 cut(s) 78, 102, 108, 181, 789, 901
CspAI ACCGGT 1 cut(s) 816
CviAII CATG 7 cut(s) 93, 671, 847, 941, 1047, 1090, 1218
CviQI GTAC 6 cut(s) 78, 102, 108, 181, 789, 901
DdeI CTNAG 2 cut(s) 659, 969
DpnI GATC 4 cut(s) 67, 132, 264, 566
DpnII GATC 4 cut(s) 65, 130, 262, 564
EaeI YGGCCR 2 cut(s) 145, 949
EagI CGGCCG 1 cut(s) 145
Eam1104I CTCTTC 1 cut(s) 630
EarI CTCTTC 1 cut(s) 630
EciI GGCGGA 2 cut(s) 656, 982
Ecl136II GAGCTC 1 cut(s) 691
EclXI CGGCCG 1 cut(s) 145
Eco24I GRGCYC 2 cut(s) 693, 1046
Eco47I GGWCC 2 cut(s) 819, 973
Eco52I CGGCCG 1 cut(s) 145
Eco53kI GAGCTC 1 cut(s) 691
Eco88I CYCGRG 1 cut(s) 390
EcoICRI GAGCTC 1 cut(s) 691
EcoNI CCTNNNNNAGG 1 cut(s) 528
EcoO109I RGGNCCY 1 cut(s) 973
EcoRII CCWGG 3 cut(s) 515, 601, 826
EcoT38I GRGCYC 2 cut(s) 693, 1046
FaeI CATG 7 cut(s) 96, 674, 850, 944, 1050, 1093, 1221
FatI CATG 7 cut(s) 92, 670, 846, 940, 1046, 1089, 1217
FauI CCCGC 3 cut(s) 713, 1126, 1166
FbaI TGATCA 2 cut(s) 130, 262
FblI GTMKAC 1 cut(s) 762
Fnu4HI GCNGC 8 cut(s) 88, 145, 228, 231, 384, 387, 484, 981
FokI GGATG 6 cut(s) 144, 173, 532, 752, 1135, 1210
FriOI GRGCYC 2 cut(s) 693, 1046
Fsp4HI GCNGC 8 cut(s) 88, 145, 228, 231, 384, 387, 484, 981
FspBI CTAG 6 cut(s) 105, 111, 116, 200, 236, 794
GlaI GCGC 1 cut(s) 595
GluI GCNGC 8 cut(s) 88, 145, 228, 231, 384, 387, 484, 981
GsaI CCCAGC 1 cut(s) 1043
GsuI CTGGAG 4 cut(s) 389, 624, 1092, 1254
HaeIII GGCC 4 cut(s) 147, 632, 858, 951
HapII CCGG 3 cut(s) 817, 896, 948
HgaI GACGC 1 cut(s) 1140
HhaI GCGC 1 cut(s) 596
Hin1I GRCGYC 1 cut(s) 1151
Hin1II CATG 7 cut(s) 96, 674, 850, 944, 1050, 1093, 1221
Hin6I GCGC 1 cut(s) 594
HinP1I GCGC 1 cut(s) 594
HincII GTYRAC 1 cut(s) 763
HindII GTYRAC 1 cut(s) 763
HinfI GANTC 5 cut(s) 37, 325, 465, 598, 625
HpaII CCGG 3 cut(s) 817, 896, 948
HphI GGTGA 5 cut(s) 134, 308, 545, 709, 892
Hpy166II GTNNAC 2 cut(s) 763, 1118
Hpy188I TCNGA 1 cut(s) 464
Hpy188III TCNNGA 6 cut(s) 21, 116, 509, 686, 890, 1109
Hpy8I GTNNAC 2 cut(s) 763, 1118
Hpy99I CGWCG 1 cut(s) 767
HpyAV CCTTC 4 cut(s) 278, 439, 547, 914
HpyCH4III ACNGT 2 cut(s) 72, 576
HpyCH4IV ACGT 3 cut(s) 1032, 1084, 1206
HpyCH4V TGCA 9 cut(s) 50, 62, 255, 775, 809, 846, 1012, 1182, 1210
HpyF10VI GCNNNNNNNGC 6 cut(s) 392, 629, 638, 1009, 1179, 1235
HpyF3I CTNAG 2 cut(s) 659, 969
HpySE526I ACGT 3 cut(s) 1032, 1084, 1206
Hsp92I GRCGYC 1 cut(s) 1151
Hsp92II CATG 7 cut(s) 96, 674, 850, 944, 1050, 1093, 1221
HspAI GCGC 1 cut(s) 594
Ksp22I TGATCA 2 cut(s) 130, 262
Kzo9I GATC 4 cut(s) 65, 130, 262, 564
LmnI GCTCC 3 cut(s) 591, 643, 1235
Lsp1109I GCAGC 5 cut(s) 239, 242, 398, 495, 967
LweI GCATC 5 cut(s) 21, 404, 510, 730, 784
MaeI CTAG 6 cut(s) 105, 111, 116, 200, 236, 794
MaeII ACGT 3 cut(s) 1032, 1084, 1206
MaeIII GTNAC 2 cut(s) 238, 609
MalI GATC 4 cut(s) 67, 132, 264, 566
MboI GATC 4 cut(s) 65, 130, 262, 564
MboII GAAGA 2 cut(s) 647, 929
MhlI GDGCHC 4 cut(s) 648, 693, 1046, 1074
MluCI AATT 8 cut(s) 214, 250, 357, 377, 425, 831, 908, 997
MlyI GAGTC 2 cut(s) 319, 592
MmeI TCCRAC 1 cut(s) 528
MroXI GAANNNNTTC 1 cut(s) 412
MseI TTAA 1 cut(s) 429
MslI CAYNNNNRTG 2 cut(s) 1017, 1077
MspI CCGG 3 cut(s) 817, 896, 948
MspR9I CCNGG 3 cut(s) 517, 603, 828
MvaI CCWGG 3 cut(s) 517, 603, 828
MvnI CGCG 1 cut(s) 596
MwoI GCNNNNNNNGC 6 cut(s) 392, 629, 638, 1009, 1179, 1235
NdeII GATC 4 cut(s) 65, 130, 262, 564
NheI GCTAGC 1 cut(s) 793
NlaIII CATG 7 cut(s) 96, 674, 850, 944, 1050, 1093, 1221
NlaIV GGNNCC 2 cut(s) 815, 1247
NmeAIII GCCGAG 1 cut(s) 769
NmuCI GTSAC 1 cut(s) 238
NspI RCATGY 1 cut(s) 944
PaeI GCATGC 1 cut(s) 944
PaeR7I CTCGAG 1 cut(s) 390
PdmI GAANNNNTTC 1 cut(s) 412
PfeI GAWTC 3 cut(s) 37, 465, 625
PfoI TCCNGGA 1 cut(s) 601
PinAI ACCGGT 1 cut(s) 816
PkrI GCNGC 8 cut(s) 89, 146, 229, 232, 385, 388, 485, 982
PleI GAGTC 2 cut(s) 319, 592
PpsI GAGTC 2 cut(s) 319, 592
PpuMI RGGWCCY 1 cut(s) 973
Psp124BI GAGCTC 1 cut(s) 693
Psp1406I AACGTT 1 cut(s) 1084
Psp5II RGGWCCY 1 cut(s) 973
Psp6I CCWGG 3 cut(s) 515, 601, 826
PspFI CCCAGC 1 cut(s) 1039
PspGI CCWGG 3 cut(s) 515, 601, 826
PspN4I GGNNCC 2 cut(s) 815, 1247
PspPI GGNCC 3 cut(s) 819, 857, 973
PspPPI RGGWCCY 1 cut(s) 973
PspXI VCTCGAGB 1 cut(s) 390
RsaI GTAC 6 cut(s) 79, 103, 109, 182, 790, 902
RsaNI GTAC 6 cut(s) 78, 102, 108, 181, 789, 901
RseI CAYNNNNRTG 2 cut(s) 1017, 1077
SacI GAGCTC 1 cut(s) 693
SalI GTCGAC 1 cut(s) 761
SaqAI TTAA 1 cut(s) 429
SatI GCNGC 8 cut(s) 88, 145, 228, 231, 384, 387, 484, 981
Sau3AI GATC 4 cut(s) 65, 130, 262, 564
Sau96I GGNCC 3 cut(s) 819, 857, 973
ScaI AGTACT 4 cut(s) 79, 103, 109, 902
SchI GAGTC 2 cut(s) 319, 592
ScrFI CCNGG 3 cut(s) 517, 603, 828
SduI GDGCHC 4 cut(s) 648, 693, 1046, 1074
SfaNI GCATC 5 cut(s) 21, 404, 510, 730, 784
SfcI CTRYAG 1 cut(s) 525
Sfr274I CTCGAG 1 cut(s) 390
SinI GGWCC 2 cut(s) 819, 973
SlaI CTCGAG 1 cut(s) 390
SmiMI CAYNNNNRTG 2 cut(s) 1017, 1077
SmlI CTYRAG 2 cut(s) 390, 1061
SmoI CTYRAG 2 cut(s) 390, 1061
SpeI ACTAGT 3 cut(s) 104, 110, 235
SphI GCATGC 1 cut(s) 944
Sse9I AATT 8 cut(s) 214, 250, 357, 377, 425, 831, 908, 997
SspMI CTAG 6 cut(s) 105, 111, 116, 200, 236, 794
SstI GAGCTC 1 cut(s) 693
StyD4I CCNGG 3 cut(s) 515, 601, 826
TaaI ACNGT 2 cut(s) 72, 576
TaiI ACGT 3 cut(s) 1035, 1087, 1209
TaqI TCGA 3 cut(s) 391, 508, 762
TasI AATT 8 cut(s) 214, 250, 357, 377, 425, 831, 908, 997
TatI WGTACW 4 cut(s) 77, 101, 107, 900
TauI GCSGC 3 cut(s) 90, 147, 386
TfiI GAWTC 3 cut(s) 37, 465, 625
Tru1I TTAA 1 cut(s) 429
Tru9I TTAA 1 cut(s) 429
TscAI CASTG 3 cut(s) 75, 351, 372
TseFI GTSAC 1 cut(s) 238
TseI GCWGC 5 cut(s) 227, 230, 386, 483, 980
Tsp45I GTSAC 1 cut(s) 238
TspDTI ATGAA 3 cut(s) 863, 1095, 1214
TspGWI ACGGA 2 cut(s) 604, 1135
TspRI CASTG 3 cut(s) 75, 351, 372
VpaK11BI GGWCC 2 cut(s) 819, 973
XagI CCTNNNNNAGG 1 cut(s) 528
XapI RAATTY 3 cut(s) 425, 831, 908
XbaI TCTAGA 1 cut(s) 115
XceI RCATGY 1 cut(s) 944
XhoI CTCGAG 1 cut(s) 390
XmiI GTMKAC 1 cut(s) 762
XmnI GAANNNNTTC 1 cut(s) 412
XspI CTAG 6 cut(s) 105, 111, 116, 200, 236, 794
ZrmI AGTACT 4 cut(s) 79, 103, 109, 902
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.