Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8377267.1

Orthogroup ID

OG0007606

Physical Location & Seq

Genomic Coordinates Forward (+)

287 .. 1150

Gene Structure 864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8377267.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 575 bp

atggaattggcggcagctcgagcatcaaaccagagaatgagttcatcatctaaatttaatcctaaaagacagaaggcttttgttgtcatcggaatcaataccgcctttagcagcaagaaacggcgaaaatcagttcgagaaacctggatgcctacaggaggtgagctgaataagttggagaaggagaaagggatcgtaatacggtttgtgataggacggagcgcgactcctggagggttacttgacagagcgattgaggcagaagaggcggagcacaacgactttcttaggctcaaccatgtggagggctaccacgagctatccaccaagacccgcctatatttcaccaccgccatctccatttgggatgcggagttttatgtcaaggtcgacgatgatgtgcatctcaatctcggtatgctagcgactacacttgcaaggcaccggtccaaacccagaatttacattggttgcatgaagtcaggcccagttctatatcaaaaaggggtgaaatatcacgagccggagtactggaaattcggggaagaagggaacaagtatttcaggcatgccac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T RRM_1

Protein Analysis

192

Amino Acids

22.0

Weight (kDa)

9.68

Isoelectric Point (pI)

42.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007606)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33430 AT1G33430 AT1G33430
fragaria_vesca	FvH4_2g00210 FvH4_2g00210
malus_domestica	MD10G1001400.v1.1
prunus_persica	Prupe.8G002000_v2.0.a1 Prupe.8G002000_v2.0.a1 Prupe.8G002000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0249501
rosa_laevigata	RLG00000015575
rosa_multiflora	Rmu_co8377267.1_g000001 Rmu_sc0022339.1_g000002 Rmu_ssc0000407.1_g000007
rosa_roxburghii	Rroxscaffold_7G00217620
rosa_rugosa	Rorug05G0493100 Rorug05G0493100 Rorug05G0493100 Rorug05G0493100
rosa_samantha	Rh6AG002700 Rh6BG007400 Rh6CG001700 Rh6DG001700
rosa_wichuraiana	Rw6G000310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	441
AccI	GTMKAC	1 cut(s)	390
AccII	CGCG	1 cut(s)	224
AciI	CCGC	6 cut(s)	11, 102, 269, 334, 351, 371
AclWI	GGATC	1 cut(s)	200
AcsI	RAATTY	3 cut(s)	53, 459, 536
AfaI	GTAC	1 cut(s)	530
AfiI	CCNNNNNNNGG	2 cut(s)	158, 304
AgeI	ACCGGT	1 cut(s)	444
AjnI	CCWGG	2 cut(s)	143, 229
AluBI	AGCT	3 cut(s)	17, 166, 319
AluI	AGCT	3 cut(s)	17, 166, 319
Alw21I	GWGCWC	1 cut(s)	276
AlwI	GGATC	1 cut(s)	200
Ama87I	CYCGRG	1 cut(s)	18
AoxI	GGCC	1 cut(s)	484
ApeKI	GCWGC	2 cut(s)	14, 111
ApoI	RAATTY	3 cut(s)	53, 459, 536
AsiGI	ACCGGT	1 cut(s)	444
Asp700I	GAANNNNTTC	1 cut(s)	40
AspLEI	GCGC	1 cut(s)	224
AspS9I	GGNCC	2 cut(s)	447, 485
AsuHPI	GGTGA	3 cut(s)	173, 337, 520
AsuNHI	GCTAGC	1 cut(s)	421
AvaI	CYCGRG	1 cut(s)	18
AvaII	GGWCC	1 cut(s)	447
BanI	GGYRCC	1 cut(s)	441
BauI	CACGAG	2 cut(s)	314, 518
Bbv12I	GWGCWC	1 cut(s)	276
BbvI	GCAGC	2 cut(s)	26, 123
BccI	CCATC	1 cut(s)	362
BceAI	ACGGC	1 cut(s)	137
BciT130I	CCWGG	2 cut(s)	145, 231
BfaI	CTAG	1 cut(s)	422
BfmI	CTRYAG	1 cut(s)	153
BisI	GCNGC	3 cut(s)	12, 15, 112
BlsI	GCNGC	3 cut(s)	13, 16, 113
BmcAI	AGTACT	1 cut(s)	530
Bme1390I	CCNGG	2 cut(s)	145, 231
Bme18I	GGWCC	1 cut(s)	447
BmeT110I	CYCGRG	1 cut(s)	18
BmgT120I	GGNCC	2 cut(s)	447, 485
BmiI	GGNNCC	1 cut(s)	443
BmrFI	CCNGG	2 cut(s)	145, 231
BmrI	ACTGGG	1 cut(s)	482
BmsI	GCATC	4 cut(s)	32, 138, 358, 412
BmtI	GCTAGC	1 cut(s)	425
BmuI	ACTGGG	1 cut(s)	482
BplI	GAGNNNNNCTC	2 cut(s)	211, 243
BpmI	CTGGAG	1 cut(s)	252
BsaBI	GATNNNNATC	1 cut(s)	402
BsaWI	WCCGGW	1 cut(s)	444
Bsc4I	CCNNNNNNNGG	2 cut(s)	158, 304
Bse118I	RCCGGY	1 cut(s)	444
Bse1I	ACTGG	2 cut(s)	488, 536
Bse8I	GATNNNNATC	1 cut(s)	402
BseBI	CCWGG	2 cut(s)	145, 231
BseGI	GGATG	2 cut(s)	153, 373
BseJI	GATNNNNATC	1 cut(s)	402
BseLI	CCNNNNNNNGG	2 cut(s)	158, 304
BseNI	ACTGG	2 cut(s)	488, 536
BseXI	GCAGC	2 cut(s)	26, 123
Bsh1236I	CGCG	1 cut(s)	224
BshFI	GGCC	1 cut(s)	486
BshNI	GGYRCC	1 cut(s)	441
BshTI	ACCGGT	1 cut(s)	444
BsiHKAI	GWGCWC	1 cut(s)	276
BsiHKCI	CYCGRG	1 cut(s)	18
BsiSI	CCGG	2 cut(s)	445, 524
BslI	CCNNNNNNNGG	2 cut(s)	158, 304
BsnI	GGCC	1 cut(s)	486
BsoBI	CYCGRG	1 cut(s)	18
Bsp1286I	GDGCHC	1 cut(s)	276
Bsp143I	GATC	1 cut(s)	192
BspACI	CCGC	6 cut(s)	11, 102, 269, 334, 351, 371
BspANI	GGCC	1 cut(s)	486
BspFNI	CGCG	1 cut(s)	224
BspLI	GGNNCC	1 cut(s)	443
BspOI	GCTAGC	1 cut(s)	425
BspPI	GGATC	1 cut(s)	200
BspT107I	GGYRCC	1 cut(s)	441
BsrFI	RCCGGY	1 cut(s)	444
BsrI	ACTGG	2 cut(s)	488, 536
BssAI	RCCGGY	1 cut(s)	444
BssMI	GATC	1 cut(s)	192
BssSI	CACGAG	2 cut(s)	314, 518
Bst2BI	CACGAG	2 cut(s)	314, 518
Bst2UI	CCWGG	2 cut(s)	145, 231
Bst4CI	ACNGT	1 cut(s)	204
Bst6I	CTCTTC	1 cut(s)	258
BstC8I	GCNNGC	2 cut(s)	423, 570
BstDEI	CTNAG	1 cut(s)	287
BstENI	CCTNNNNNAGG	1 cut(s)	156
BstF5I	GGATG	2 cut(s)	153, 373
BstFNI	CGCG	1 cut(s)	224
BstHHI	GCGC	1 cut(s)	224
BstKTI	GATC	1 cut(s)	195
BstMBI	GATC	1 cut(s)	192
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 257, 266
BstNI	CCWGG	2 cut(s)	145, 231
BstNSI	RCATGY	1 cut(s)	572
BstSCI	CCNGG	2 cut(s)	143, 229
BstSFI	CTRYAG	1 cut(s)	153
BstUI	CGCG	1 cut(s)	224
BstV1I	GCAGC	2 cut(s)	26, 123
BsuRI	GGCC	1 cut(s)	486
BtsCI	GGATG	2 cut(s)	153, 373
Cac8I	GCNNGC	2 cut(s)	423, 570
CfoI	GCGC	1 cut(s)	224
Cfr10I	RCCGGY	1 cut(s)	444
Cfr13I	GGNCC	2 cut(s)	447, 485
Csp6I	GTAC	1 cut(s)	529
CspAI	ACCGGT	1 cut(s)	444
CviAII	CATG	3 cut(s)	299, 475, 569
CviJI	RGCY	8 cut(s)	17, 77, 166, 292, 309, 319, 486, 523
CviKI_1	RGCY	8 cut(s)	17, 77, 166, 292, 309, 319, 486, 523
CviQI	GTAC	1 cut(s)	529
DdeI	CTNAG	1 cut(s)	287
DpnI	GATC	1 cut(s)	194
DpnII	GATC	1 cut(s)	192
Eam1104I	CTCTTC	1 cut(s)	258
EarI	CTCTTC	1 cut(s)	258
EciI	GGCGGA	1 cut(s)	284
Eco47I	GGWCC	1 cut(s)	447
Eco88I	CYCGRG	1 cut(s)	18
EcoNI	CCTNNNNNAGG	1 cut(s)	156
EcoRII	CCWGG	2 cut(s)	143, 229
FaeI	CATG	3 cut(s)	302, 478, 572
FaiI	YATR	7 cut(s)	300, 340, 381, 419, 476, 496, 570
FatI	CATG	3 cut(s)	298, 474, 568
FauI	CCCGC	1 cut(s)	341
FblI	GTMKAC	1 cut(s)	390
Fnu4HI	GCNGC	3 cut(s)	12, 15, 112
FokI	GGATG	2 cut(s)	160, 380
Fsp4HI	GCNGC	3 cut(s)	12, 15, 112
FspBI	CTAG	1 cut(s)	422
GlaI	GCGC	1 cut(s)	223
GluI	GCNGC	3 cut(s)	12, 15, 112
GsuI	CTGGAG	1 cut(s)	252
HaeIII	GGCC	1 cut(s)	486
HapII	CCGG	2 cut(s)	445, 524
HhaI	GCGC	1 cut(s)	224
Hin1II	CATG	3 cut(s)	302, 478, 572
Hin6I	GCGC	1 cut(s)	222
HinP1I	GCGC	1 cut(s)	222
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
HinfI	GANTC	2 cut(s)	93, 226
HpaII	CCGG	2 cut(s)	445, 524
HphI	GGTGA	3 cut(s)	173, 337, 520
Hpy166II	GTNNAC	1 cut(s)	391
Hpy188I	TCNGA	1 cut(s)	92
Hpy188III	TCNNGA	2 cut(s)	137, 518
Hpy8I	GTNNAC	1 cut(s)	391
Hpy99I	CGWCG	1 cut(s)	395
HpyAV	CCTTC	3 cut(s)	67, 175, 542
HpyCH4III	ACNGT	1 cut(s)	204
HpyCH4V	TGCA	3 cut(s)	403, 437, 474
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 257, 266
HpyF3I	CTNAG	1 cut(s)	287
Hsp92II	CATG	3 cut(s)	302, 478, 572
HspAI	GCGC	1 cut(s)	222
Kzo9I	GATC	1 cut(s)	192
LmnI	GCTCC	2 cut(s)	219, 271
Lsp1109I	GCAGC	2 cut(s)	26, 123
LweI	GCATC	4 cut(s)	32, 138, 358, 412
MaeI	CTAG	1 cut(s)	422
MaeIII	GTNAC	1 cut(s)	237
MalI	GATC	1 cut(s)	194
MboI	GATC	1 cut(s)	192
MboII	GAAGA	2 cut(s)	275, 557
MhlI	GDGCHC	1 cut(s)	276
MluCI	AATT	4 cut(s)	5, 53, 459, 536
MlyI	GAGTC	1 cut(s)	220
MmeI	TCCRAC	1 cut(s)	156
MnlI	CCTC	5 cut(s)	152, 227, 250, 259, 298
MroXI	GAANNNNTTC	1 cut(s)	40
MseI	TTAA	1 cut(s)	57
MspI	CCGG	2 cut(s)	445, 524
MspR9I	CCNGG	2 cut(s)	145, 231
MvaI	CCWGG	2 cut(s)	145, 231
MvnI	CGCG	1 cut(s)	224
MwoI	GCNNNNNNNGC	3 cut(s)	20, 257, 266
NdeII	GATC	1 cut(s)	192
NheI	GCTAGC	1 cut(s)	421
NlaIII	CATG	3 cut(s)	302, 478, 572
NlaIV	GGNNCC	1 cut(s)	443
NspI	RCATGY	1 cut(s)	572
PaeI	GCATGC	1 cut(s)	572
PaeR7I	CTCGAG	1 cut(s)	18
PdmI	GAANNNNTTC	1 cut(s)	40
PfeI	GAWTC	1 cut(s)	93
PfoI	TCCNGGA	1 cut(s)	229
PinAI	ACCGGT	1 cut(s)	444
PkrI	GCNGC	3 cut(s)	13, 16, 113
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
Psp6I	CCWGG	2 cut(s)	143, 229
PspGI	CCWGG	2 cut(s)	143, 229
PspN4I	GGNNCC	1 cut(s)	443
PspPI	GGNCC	2 cut(s)	447, 485
PspXI	VCTCGAGB	1 cut(s)	18
RsaI	GTAC	1 cut(s)	530
RsaNI	GTAC	1 cut(s)	529
SalI	GTCGAC	1 cut(s)	389
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	3 cut(s)	12, 15, 112
Sau3AI	GATC	1 cut(s)	192
Sau96I	GGNCC	2 cut(s)	447, 485
ScaI	AGTACT	1 cut(s)	530
SchI	GAGTC	1 cut(s)	220
ScrFI	CCNGG	2 cut(s)	145, 231
SduI	GDGCHC	1 cut(s)	276
SetI	ASST	6 cut(s)	19, 146, 163, 168, 321, 390
SfaNI	GCATC	4 cut(s)	32, 138, 358, 412
SfcI	CTRYAG	1 cut(s)	153
Sfr274I	CTCGAG	1 cut(s)	18
SinI	GGWCC	1 cut(s)	447
SlaI	CTCGAG	1 cut(s)	18
SmlI	CTYRAG	1 cut(s)	18
SmoI	CTYRAG	1 cut(s)	18
SphI	GCATGC	1 cut(s)	572
Sse9I	AATT	4 cut(s)	5, 53, 459, 536
SsiI	CCGC	6 cut(s)	11, 102, 269, 334, 351, 371
SspMI	CTAG	1 cut(s)	422
StyD4I	CCNGG	2 cut(s)	143, 229
TaaI	ACNGT	1 cut(s)	204
TaqI	TCGA	3 cut(s)	19, 136, 390
TasI	AATT	4 cut(s)	5, 53, 459, 536
TatI	WGTACW	1 cut(s)	528
TauI	GCSGC	1 cut(s)	14
TfiI	GAWTC	1 cut(s)	93
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TseI	GCWGC	2 cut(s)	14, 111
TspDTI	ATGAA	2 cut(s)	33, 491
TspGWI	ACGGA	1 cut(s)	232
VpaK11BI	GGWCC	1 cut(s)	447
XagI	CCTNNNNNAGG	1 cut(s)	156
XapI	RAATTY	3 cut(s)	53, 459, 536
XceI	RCATGY	1 cut(s)	572
XhoI	CTCGAG	1 cut(s)	18
XmiI	GTMKAC	1 cut(s)	390
XmnI	GAANNNNTTC	1 cut(s)	40
XspI	CTAG	1 cut(s)	422
ZrmI	AGTACT	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.