Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0007606

Physical Location & Seq

Genomic Coordinates Forward (+)

317458 .. 321542

Gene Structure 4085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG001700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGAGGGGGAAACAGGTTTCAGGAAAAGCGATGCTGATTCTATGTATTGCAAGTTTTTTTGCAGGATCACTGTTCAGTACTACAAGCCGCACATGGAGTAGTACTAGTACTAGTCTAGATGGTGATGATGATCAACCTAATGGCGGCCGTGAAGCTCATCCATTTCCCATCGTTTCCAAGTACCACATCCACAACCACCTTGACGAAACAGCCAATTCCAAAGGGGCAGCAGCACTAGTCACACAAACTAATTGCAATGATGATCACAAGCGAAAACTGGTTGAAGGAAAATCTGGTGATGATATTATGGGGGAGGTGGCAAAGACTCATCAAGCTATCAAATCACTGGATAGGACAATTTCAACACTGGAGATGGAATTGGCGGCAGCTCGAGCATCAAACCAGAGAATGAGTTCATCATCTAAATTTAATCCTAAAAGACAGAAGGCTTTTGTTGTCATCGGAATCAATACCGCCTTTAGCAGCAAGAAACGGCGAAAATCAGTTCGAGAAACCTGGATGCCTACAGGAGGTGAGCTGAATAAGTTGGAGAAGGAGAAAGGGATCGTAATACGGTTTGTGATAGGACGGAGCGCGACTCCTGGAGGGTTACTTGACAGAGCGATTGAGGCAGAAGAGGCGGAGCACAACGACTTTCTTAGGCTCAACCATGTGGAGGGCTACCACGAGCTCTCCACCAAGACCCGCCTCTATTTCACCACCGCCATCTCCATTTGGGATGCCGAGTTTTATGTCAAGGTCGACGATGATGTGCATCTCAATCTCGGTATGCTAGCGACTACACTTGCAAGGCACCGGTCCAAACCCAGAATTTACATTGGTTGCATGAAGTCAGGCCCAGTTCTATATCAAAAGTGCGTGAGATCTCGATCAATCACTAGACTAGTTCTACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4094 Galactosyl_T RRM_1

Protein Analysis

305

Amino Acids

33.91

Weight (kDa)

9.56

Isoelectric Point (pI)

35.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4094	PF13334	80 - 133	1.8e-14	Domain of unknown function (DUF4094)
Galactosyl_T	PF01762	164 - 297	5.2e-30	Galactosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007606)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33430 AT1G33430 AT1G33430
fragaria_vesca	FvH4_2g00210 FvH4_2g00210
malus_domestica	MD10G1001400.v1.1
prunus_persica	Prupe.8G002000_v2.0.a1 Prupe.8G002000_v2.0.a1 Prupe.8G002000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0249501
rosa_laevigata	RLG00000015575
rosa_multiflora	Rmu_co8377267.1_g000001 Rmu_sc0022339.1_g000002 Rmu_ssc0000407.1_g000007
rosa_roxburghii	Rroxscaffold_7G00217620
rosa_rugosa	Rorug05G0493100 Rorug05G0493100 Rorug05G0493100 Rorug05G0493100
rosa_samantha	Rh6AG002700 Rh6BG007400 Rh6CG001700 Rh6DG001700
rosa_wichuraiana	Rw6G000310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	813
AccI	GTMKAC	1 cut(s)	762
AccII	CGCG	1 cut(s)	596
AciI	CCGC	7 cut(s)	88, 144, 383, 474, 641, 706, 723
AclWI	GGATC	2 cut(s)	73, 572
AcoI	YGGCCR	1 cut(s)	145
AcsI	RAATTY	2 cut(s)	425, 831
AfaI	GTAC	4 cut(s)	79, 103, 109, 182
AfiI	CCNNNNNNNGG	3 cut(s)	143, 530, 676
AgeI	ACCGGT	1 cut(s)	816
AgsI	TTSAA	2 cut(s)	284, 363
AhlI	ACTAGT	4 cut(s)	104, 110, 235, 904
AjnI	CCWGG	2 cut(s)	515, 601
AluBI	AGCT	5 cut(s)	155, 335, 389, 538, 691
AluI	AGCT	5 cut(s)	155, 335, 389, 538, 691
Alw21I	GWGCWC	2 cut(s)	648, 693
AlwI	GGATC	2 cut(s)	73, 572
Ama87I	CYCGRG	1 cut(s)	390
AoxI	GGCC	2 cut(s)	145, 856
ApeKI	GCWGC	4 cut(s)	227, 230, 386, 483
ApoI	RAATTY	2 cut(s)	425, 831
AsiGI	ACCGGT	1 cut(s)	816
Asp700I	GAANNNNTTC	1 cut(s)	412
AspLEI	GCGC	1 cut(s)	596
AspS9I	GGNCC	2 cut(s)	819, 857
AsuHPI	GGTGA	4 cut(s)	134, 308, 545, 709
AsuNHI	GCTAGC	1 cut(s)	793
AvaI	CYCGRG	1 cut(s)	390
AvaII	GGWCC	1 cut(s)	819
BanI	GGYRCC	1 cut(s)	813
BanII	GRGCYC	1 cut(s)	693
BauI	CACGAG	1 cut(s)	686
Bbv12I	GWGCWC	2 cut(s)	648, 693
BbvI	GCAGC	4 cut(s)	239, 242, 398, 495
BccI	CCATC	4 cut(s)	113, 176, 367, 734
BceAI	ACGGC	2 cut(s)	132, 509
BciT130I	CCWGG	2 cut(s)	517, 603
BclI	TGATCA	2 cut(s)	130, 262
BcuI	ACTAGT	4 cut(s)	104, 110, 235, 904
BfaI	CTAG	7 cut(s)	105, 111, 116, 236, 794, 900, 905
BfmI	CTRYAG	1 cut(s)	525
BglII	AGATCT	1 cut(s)	884
BisI	GCNGC	7 cut(s)	88, 145, 228, 231, 384, 387, 484
BlsI	GCNGC	7 cut(s)	89, 146, 229, 232, 385, 388, 485
BmcAI	AGTACT	3 cut(s)	79, 103, 109
Bme1390I	CCNGG	2 cut(s)	517, 603
Bme18I	GGWCC	1 cut(s)	819
BmeT110I	CYCGRG	1 cut(s)	390
BmgT120I	GGNCC	2 cut(s)	819, 857
BmiI	GGNNCC	1 cut(s)	815
BmrFI	CCNGG	2 cut(s)	517, 603
BmrI	ACTGGG	1 cut(s)	854
BmsI	GCATC	5 cut(s)	21, 404, 510, 730, 784
BmtI	GCTAGC	1 cut(s)	797
BmuI	ACTGGG	1 cut(s)	854
BplI	GAGNNNNNCTC	2 cut(s)	583, 615
BpmI	CTGGAG	2 cut(s)	389, 624
BsaBI	GATNNNNATC	3 cut(s)	129, 774, 889
BsaWI	WCCGGW	1 cut(s)	816
BsaXI	ACNNNNNCTCC	2 cut(s)	677, 707
Bsc4I	CCNNNNNNNGG	3 cut(s)	143, 530, 676
Bse118I	RCCGGY	1 cut(s)	816
Bse1I	ACTGG	4 cut(s)	282, 351, 372, 860
Bse3DI	GCAATG	1 cut(s)	262
Bse8I	GATNNNNATC	3 cut(s)	129, 774, 889
BseBI	CCWGG	2 cut(s)	517, 603
BseGI	GGATG	4 cut(s)	157, 186, 525, 745
BseJI	GATNNNNATC	3 cut(s)	129, 774, 889
BseLI	CCNNNNNNNGG	3 cut(s)	143, 530, 676
BseMI	GCAATG	1 cut(s)	262
BseNI	ACTGG	4 cut(s)	282, 351, 372, 860
BseX3I	CGGCCG	1 cut(s)	145
BseXI	GCAGC	4 cut(s)	239, 242, 398, 495
Bsh1236I	CGCG	1 cut(s)	596
Bsh1285I	CGRYCG	1 cut(s)	148
BshFI	GGCC	2 cut(s)	147, 858
BshNI	GGYRCC	1 cut(s)	813
BshTI	ACCGGT	1 cut(s)	816
BsiEI	CGRYCG	1 cut(s)	148
BsiHKAI	GWGCWC	2 cut(s)	648, 693
BsiHKCI	CYCGRG	1 cut(s)	390
BsiSI	CCGG	1 cut(s)	817
BslI	CCNNNNNNNGG	3 cut(s)	143, 530, 676
BsnI	GGCC	2 cut(s)	147, 858
BsoBI	CYCGRG	1 cut(s)	390
Bsp1286I	GDGCHC	2 cut(s)	648, 693
Bsp143I	GATC	6 cut(s)	65, 130, 262, 564, 884, 890
BspACI	CCGC	7 cut(s)	88, 144, 383, 474, 641, 706, 723
BspANI	GGCC	2 cut(s)	147, 858
BspFNI	CGCG	1 cut(s)	596
BspLI	GGNNCC	1 cut(s)	815
BspOI	GCTAGC	1 cut(s)	797
BspPI	GGATC	2 cut(s)	73, 572
BspT107I	GGYRCC	1 cut(s)	813
BsrDI	GCAATG	1 cut(s)	262
BsrFI	RCCGGY	1 cut(s)	816
BsrI	ACTGG	4 cut(s)	282, 351, 372, 860
BssAI	RCCGGY	1 cut(s)	816
BssMI	GATC	6 cut(s)	65, 130, 262, 564, 884, 890
BssSI	CACGAG	1 cut(s)	686
Bst2BI	CACGAG	1 cut(s)	686
Bst2UI	CCWGG	2 cut(s)	517, 603
Bst4CI	ACNGT	2 cut(s)	72, 576
Bst6I	CTCTTC	1 cut(s)	630
BstC8I	GCNNGC	1 cut(s)	795
BstDEI	CTNAG	1 cut(s)	659
BstENI	CCTNNNNNAGG	1 cut(s)	528
BstF5I	GGATG	4 cut(s)	157, 186, 525, 745
BstFNI	CGCG	1 cut(s)	596
BstHHI	GCGC	1 cut(s)	596
BstKTI	GATC	6 cut(s)	68, 133, 265, 567, 887, 893
BstMBI	GATC	6 cut(s)	65, 130, 262, 564, 884, 890
BstMCI	CGRYCG	1 cut(s)	148
BstMWI	GCNNNNNNNGC	3 cut(s)	392, 629, 638
BstNI	CCWGG	2 cut(s)	517, 603
BstSCI	CCNGG	2 cut(s)	515, 601
BstSFI	CTRYAG	1 cut(s)	525
BstUI	CGCG	1 cut(s)	596
BstV1I	GCAGC	4 cut(s)	239, 242, 398, 495
BstX2I	RGATCY	1 cut(s)	884
BstYI	RGATCY	1 cut(s)	884
BstZI	CGGCCG	1 cut(s)	145
BsuRI	GGCC	2 cut(s)	147, 858
BtgZI	GCGATG	1 cut(s)	44
BtsCI	GGATG	4 cut(s)	157, 186, 525, 745
BtsIMutI	CAGTG	3 cut(s)	68, 344, 365
Cac8I	GCNNGC	1 cut(s)	795
CfoI	GCGC	1 cut(s)	596
Cfr10I	RCCGGY	1 cut(s)	816
Cfr13I	GGNCC	2 cut(s)	819, 857
Csp6I	GTAC	4 cut(s)	78, 102, 108, 181
CspAI	ACCGGT	1 cut(s)	816
CviAII	CATG	3 cut(s)	93, 671, 847
CviQI	GTAC	4 cut(s)	78, 102, 108, 181
DdeI	CTNAG	1 cut(s)	659
DpnI	GATC	6 cut(s)	67, 132, 264, 566, 886, 892
DpnII	GATC	6 cut(s)	65, 130, 262, 564, 884, 890
EaeI	YGGCCR	1 cut(s)	145
EagI	CGGCCG	1 cut(s)	145
Eam1104I	CTCTTC	1 cut(s)	630
EarI	CTCTTC	1 cut(s)	630
EciI	GGCGGA	1 cut(s)	656
Ecl136II	GAGCTC	1 cut(s)	691
EclXI	CGGCCG	1 cut(s)	145
Eco24I	GRGCYC	1 cut(s)	693
Eco47I	GGWCC	1 cut(s)	819
Eco52I	CGGCCG	1 cut(s)	145
Eco53kI	GAGCTC	1 cut(s)	691
Eco88I	CYCGRG	1 cut(s)	390
EcoICRI	GAGCTC	1 cut(s)	691
EcoNI	CCTNNNNNAGG	1 cut(s)	528
EcoRII	CCWGG	2 cut(s)	515, 601
EcoT38I	GRGCYC	1 cut(s)	693
FaeI	CATG	3 cut(s)	96, 674, 850
FaiI	YATR	8 cut(s)	43, 94, 308, 672, 753, 791, 848, 868
FatI	CATG	3 cut(s)	92, 670, 846
FauI	CCCGC	1 cut(s)	713
FbaI	TGATCA	2 cut(s)	130, 262
FblI	GTMKAC	1 cut(s)	762
Fnu4HI	GCNGC	7 cut(s)	88, 145, 228, 231, 384, 387, 484
FokI	GGATG	4 cut(s)	144, 173, 532, 752
FriOI	GRGCYC	1 cut(s)	693
Fsp4HI	GCNGC	7 cut(s)	88, 145, 228, 231, 384, 387, 484
FspBI	CTAG	7 cut(s)	105, 111, 116, 236, 794, 900, 905
GlaI	GCGC	1 cut(s)	595
GluI	GCNGC	7 cut(s)	88, 145, 228, 231, 384, 387, 484
GsuI	CTGGAG	2 cut(s)	389, 624
HaeIII	GGCC	2 cut(s)	147, 858
HapII	CCGG	1 cut(s)	817
HhaI	GCGC	1 cut(s)	596
Hin1II	CATG	3 cut(s)	96, 674, 850
Hin6I	GCGC	1 cut(s)	594
HinP1I	GCGC	1 cut(s)	594
HincII	GTYRAC	1 cut(s)	763
HindII	GTYRAC	1 cut(s)	763
HinfI	GANTC	4 cut(s)	37, 325, 465, 598
HpaII	CCGG	1 cut(s)	817
HphI	GGTGA	4 cut(s)	134, 308, 545, 709
Hpy166II	GTNNAC	1 cut(s)	763
Hpy188I	TCNGA	1 cut(s)	464
Hpy188III	TCNNGA	4 cut(s)	21, 116, 509, 888
Hpy8I	GTNNAC	1 cut(s)	763
Hpy99I	CGWCG	1 cut(s)	767
HpyAV	CCTTC	3 cut(s)	278, 439, 547
HpyCH4III	ACNGT	2 cut(s)	72, 576
HpyCH4V	TGCA	6 cut(s)	50, 62, 255, 775, 809, 846
HpyF10VI	GCNNNNNNNGC	3 cut(s)	392, 629, 638
HpyF3I	CTNAG	1 cut(s)	659
Hsp92II	CATG	3 cut(s)	96, 674, 850
HspAI	GCGC	1 cut(s)	594
Ksp22I	TGATCA	2 cut(s)	130, 262
Kzo9I	GATC	6 cut(s)	65, 130, 262, 564, 884, 890
LmnI	GCTCC	2 cut(s)	591, 643
Lsp1109I	GCAGC	4 cut(s)	239, 242, 398, 495
LweI	GCATC	5 cut(s)	21, 404, 510, 730, 784
MaeI	CTAG	7 cut(s)	105, 111, 116, 236, 794, 900, 905
MaeIII	GTNAC	2 cut(s)	238, 609
MalI	GATC	6 cut(s)	67, 132, 264, 566, 886, 892
MboI	GATC	6 cut(s)	65, 130, 262, 564, 884, 890
MboII	GAAGA	1 cut(s)	647
MflI	RGATCY	1 cut(s)	884
MhlI	GDGCHC	2 cut(s)	648, 693
MluCI	AATT	6 cut(s)	214, 250, 357, 377, 425, 831
MlyI	GAGTC	2 cut(s)	319, 592
MmeI	TCCRAC	1 cut(s)	528
MnlI	CCTC	7 cut(s)	307, 524, 599, 622, 631, 670, 719
MroXI	GAANNNNTTC	1 cut(s)	412
MseI	TTAA	1 cut(s)	429
MspI	CCGG	1 cut(s)	817
MspR9I	CCNGG	2 cut(s)	517, 603
MvaI	CCWGG	2 cut(s)	517, 603
MvnI	CGCG	1 cut(s)	596
MwoI	GCNNNNNNNGC	3 cut(s)	392, 629, 638
NdeII	GATC	6 cut(s)	65, 130, 262, 564, 884, 890
NheI	GCTAGC	1 cut(s)	793
NlaIII	CATG	3 cut(s)	96, 674, 850
NlaIV	GGNNCC	1 cut(s)	815
NmeAIII	GCCGAG	1 cut(s)	769
NmuCI	GTSAC	1 cut(s)	238
PaeR7I	CTCGAG	1 cut(s)	390
PdmI	GAANNNNTTC	1 cut(s)	412
PfeI	GAWTC	2 cut(s)	37, 465
PfoI	TCCNGGA	1 cut(s)	601
PinAI	ACCGGT	1 cut(s)	816
PkrI	GCNGC	7 cut(s)	89, 146, 229, 232, 385, 388, 485
PleI	GAGTC	2 cut(s)	319, 592
PpsI	GAGTC	2 cut(s)	319, 592
Psp124BI	GAGCTC	1 cut(s)	693
Psp6I	CCWGG	2 cut(s)	515, 601
PspGI	CCWGG	2 cut(s)	515, 601
PspN4I	GGNNCC	1 cut(s)	815
PspPI	GGNCC	2 cut(s)	819, 857
PspXI	VCTCGAGB	1 cut(s)	390
PsuI	RGATCY	1 cut(s)	884
RsaI	GTAC	4 cut(s)	79, 103, 109, 182
RsaNI	GTAC	4 cut(s)	78, 102, 108, 181
SacI	GAGCTC	1 cut(s)	693
SalI	GTCGAC	1 cut(s)	761
SaqAI	TTAA	1 cut(s)	429
SatI	GCNGC	7 cut(s)	88, 145, 228, 231, 384, 387, 484
Sau3AI	GATC	6 cut(s)	65, 130, 262, 564, 884, 890
Sau96I	GGNCC	2 cut(s)	819, 857
ScaI	AGTACT	3 cut(s)	79, 103, 109
SchI	GAGTC	2 cut(s)	319, 592
ScrFI	CCNGG	2 cut(s)	517, 603
SduI	GDGCHC	2 cut(s)	648, 693
SfaNI	GCATC	5 cut(s)	21, 404, 510, 730, 784
SfcI	CTRYAG	1 cut(s)	525
Sfr274I	CTCGAG	1 cut(s)	390
SinI	GGWCC	1 cut(s)	819
SlaI	CTCGAG	1 cut(s)	390
SmlI	CTYRAG	1 cut(s)	390
SmoI	CTYRAG	1 cut(s)	390
SpeI	ACTAGT	4 cut(s)	104, 110, 235, 904
Sse9I	AATT	6 cut(s)	214, 250, 357, 377, 425, 831
SsiI	CCGC	7 cut(s)	88, 144, 383, 474, 641, 706, 723
SspMI	CTAG	7 cut(s)	105, 111, 116, 236, 794, 900, 905
SstI	GAGCTC	1 cut(s)	693
StyD4I	CCNGG	2 cut(s)	515, 601
TaaI	ACNGT	2 cut(s)	72, 576
TaqI	TCGA	4 cut(s)	391, 508, 762, 889
TasI	AATT	6 cut(s)	214, 250, 357, 377, 425, 831
TatI	WGTACW	3 cut(s)	77, 101, 107
TauI	GCSGC	3 cut(s)	90, 147, 386
TfiI	GAWTC	2 cut(s)	37, 465
Tru1I	TTAA	1 cut(s)	429
Tru9I	TTAA	1 cut(s)	429
TscAI	CASTG	3 cut(s)	75, 351, 372
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	4 cut(s)	227, 230, 386, 483
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	2 cut(s)	405, 863
TspGWI	ACGGA	1 cut(s)	604
TspRI	CASTG	3 cut(s)	75, 351, 372
VpaK11BI	GGWCC	1 cut(s)	819
XagI	CCTNNNNNAGG	1 cut(s)	528
XapI	RAATTY	2 cut(s)	425, 831
XbaI	TCTAGA	1 cut(s)	115
XhoI	CTCGAG	1 cut(s)	390
XmiI	GTMKAC	1 cut(s)	762
XmnI	GAANNNNTTC	1 cut(s)	412
XspI	CTAG	7 cut(s)	105, 111, 116, 236, 794, 900, 905
ZrmI	AGTACT	3 cut(s)	79, 103, 109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.