Rw6G000310

Belongs to the glycosyltransferase 31 family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
705267 .. 707219
1953 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G000310.1

Sequence Viewer

Length: 1257 bp
ATGAGGGGGAAACAGGTTTCAGGAAAGGCGATGCTGATTCTATGTGTTGCAAGTTTTTTTGCAGGATCACTGTTCAGTACTACAAGCCGCACATGGAGTAGTACTAGTACTAGTCTAGATGGTGATGATGATCAACCTAATGGCGGCCGTGAAGCTCATCCATTTCCTATCGTTTCCAAGTACCACATCCACAACCACCTAGACGAAACAGCCAATTCTAAAGGGGCAGCAGCACTAGTCACACAAACTAATTGCAATGATGATCACAAGCGAAAACTGGTTGAAGGAAAATCTGGTGATGATATTATGGGGGAGGTGGCAAGGACTCATCAAGCTATCAAATCACTGGATAGGACAATTTCAACACTGGAGATGGAATTGGCGGCAGCTCGAGCATCAAACCAGAGAATGAGTTCATCATCTAAATTTAATCCTAAAAGACAGAAGGCTTTTGTTGTCATCGGAATCAATACCGCCTTTAGCAGCAAGAAACGGCGAAAATCAGTTCGAGAAACCTGGATGCCTACAGGTGAGCTGAATAAGTTGGAGAAGGAGAAAGGGATCGTAATACGGTTTGTGATAGGACGGAGCGCGACTCCTGGAGGGTTACTTGACAGAGCGATTGAGGCAGAAGAGGCGGAGCACAACGACTTTCTTAGGCTCAACCATGTGGAGGGCTACCACGAGCTATCCACCAAGACCCGCCTATATTTCACCACCGCCATCTCCATTTGGGATGCCGAGTTTTATGTCAAGGTCGACGATGATGTGCATCTCAATCTCGGTATGCTAGCGACTACACTTGCAAGGCACCGGTCCAAACCCAGAATTTACATTGGTTGCATGAAGTCAGGCCCAGTTCTATATCAAAAAGGGGTGAAATATCACGAGCCGGAGTACTGGAAATTCGGGGAAGAAGGGAACAAGTATTTCAGGCATGCCACCGGCCAAATCTATGCCATCTCTAAGGACCTCGCTGCCTACATTTCCACCAATTTGCCCATATTGCATAGGTATGCGAATGAGGATGTATCGCTGGGCTCATGGTTTATTGGACTTGAAGTTGAGCACATCGATGAACGTTCTATGTGTTGTGCCACCTCTCCAGATTGTGAACGGATGGCACAAGCGGGGAATGTTTGTGTGGCGTCATTTGACTGGAAGTGTAGCGGGATATGCAACTCGGTTGAGAGGATGAAAGACGTGCATAACTCATGTGGCGAAGGAACTGGAGCTGTTTGGAACCTTGACCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

418

Amino Acids

46.61

Weight (kDa)

7.98

Isoelectric Point (pI)

32.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4094 PF13334 80 - 133 4.6e-14 Domain of unknown function (DUF4094)
Galactosyl_T PF01762 164 - 359 8.2e-46 Galactosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 810
AccI GTMKAC 1 cut(s) 759
AccII CGCG 1 cut(s) 593
AciI CCGC 9 cut(s) 88, 144, 383, 474, 638, 703, 720, 1130, 1170
AclI AACGTT 1 cut(s) 1081
AclWI GGATC 2 cut(s) 73, 569
AcoI YGGCCR 2 cut(s) 145, 946
AcsI RAATTY 3 cut(s) 425, 828, 905
AcyI GRCGYC 1 cut(s) 1148
AfaI GTAC 5 cut(s) 79, 103, 109, 182, 899
AfiI CCNNNNNNNGG 2 cut(s) 143, 673
AgeI ACCGGT 1 cut(s) 813
AgsI TTSAA 3 cut(s) 284, 363, 1061
AhlI ACTAGT 3 cut(s) 104, 110, 235
AjiI CACGTC 1 cut(s) 1204
AjnI CCWGG 2 cut(s) 515, 598
AluBI AGCT 6 cut(s) 155, 335, 389, 535, 688, 1235
AluI AGCT 6 cut(s) 155, 335, 389, 535, 688, 1235
Alw21I GWGCWC 2 cut(s) 645, 1071
AlwI GGATC 2 cut(s) 73, 569
Ama87I CYCGRG 1 cut(s) 390
AoxI GGCC 3 cut(s) 145, 853, 946
ApeKI GCWGC 5 cut(s) 227, 230, 386, 483, 977
ApoI RAATTY 3 cut(s) 425, 828, 905
AsiGI ACCGGT 1 cut(s) 813
Asp700I GAANNNNTTC 1 cut(s) 412
AspLEI GCGC 1 cut(s) 593
AspS9I GGNCC 3 cut(s) 816, 854, 970
AsuHPI GGTGA 5 cut(s) 134, 308, 542, 706, 889
AsuNHI GCTAGC 1 cut(s) 790
AvaI CYCGRG 1 cut(s) 390
AvaII GGWCC 2 cut(s) 816, 970
BanI GGYRCC 1 cut(s) 810
BanII GRGCYC 1 cut(s) 1043
BauI CACGAG 2 cut(s) 683, 887
Bbv12I GWGCWC 2 cut(s) 645, 1071
BbvI GCAGC 5 cut(s) 239, 242, 398, 495, 964
BccI CCATC 5 cut(s) 113, 367, 731, 968, 1114
BceAI ACGGC 2 cut(s) 132, 509
BciT130I CCWGG 2 cut(s) 517, 600
BclI TGATCA 2 cut(s) 130, 262
BcuI ACTAGT 3 cut(s) 104, 110, 235
BfaI CTAG 6 cut(s) 105, 111, 116, 200, 236, 791
BfmI CTRYAG 1 cut(s) 525
BisI GCNGC 8 cut(s) 88, 145, 228, 231, 384, 387, 484, 978
BlsI GCNGC 8 cut(s) 89, 146, 229, 232, 385, 388, 485, 979
BmcAI AGTACT 4 cut(s) 79, 103, 109, 899
Bme1390I CCNGG 2 cut(s) 517, 600
Bme18I GGWCC 2 cut(s) 816, 970
BmeT110I CYCGRG 1 cut(s) 390
BmgBI CACGTC 1 cut(s) 1204
BmgT120I GGNCC 3 cut(s) 816, 854, 970
BmiI GGNNCC 2 cut(s) 812, 1244
BmrFI CCNGG 2 cut(s) 517, 600
BmrI ACTGGG 1 cut(s) 851
BmsI GCATC 5 cut(s) 21, 404, 510, 727, 781
BmtI GCTAGC 1 cut(s) 794
BmuI ACTGGG 1 cut(s) 851
BplI GAGNNNNNCTC 2 cut(s) 580, 612
BpmI CTGGAG 4 cut(s) 389, 621, 1089, 1251
Bsa29I ATCGAT 1 cut(s) 1074
BsaBI GATNNNNATC 2 cut(s) 129, 771
BsaHI GRCGYC 1 cut(s) 1148
BsaWI WCCGGW 1 cut(s) 813
Bsc4I CCNNNNNNNGG 2 cut(s) 143, 673
Bse118I RCCGGY 2 cut(s) 813, 944
Bse1I ACTGG 7 cut(s) 282, 351, 372, 857, 905, 1163, 1234
Bse3DI GCAATG 1 cut(s) 262
Bse8I GATNNNNATC 2 cut(s) 129, 771
BseBI CCWGG 2 cut(s) 517, 600
BseCI ATCGAT 1 cut(s) 1074
BseGI GGATG 7 cut(s) 157, 186, 525, 742, 1033, 1125, 1200
BseJI GATNNNNATC 2 cut(s) 129, 771
BseLI CCNNNNNNNGG 2 cut(s) 143, 673
BseMI GCAATG 1 cut(s) 262
BseNI ACTGG 7 cut(s) 282, 351, 372, 857, 905, 1163, 1234
BseX3I CGGCCG 1 cut(s) 145
BseXI GCAGC 5 cut(s) 239, 242, 398, 495, 964
BseYI CCCAGC 1 cut(s) 1036
Bsh1236I CGCG 1 cut(s) 593
Bsh1285I CGRYCG 1 cut(s) 148
BshFI GGCC 3 cut(s) 147, 855, 948
BshNI GGYRCC 1 cut(s) 810
BshTI ACCGGT 1 cut(s) 813
BshVI ATCGAT 1 cut(s) 1074
BsiEI CGRYCG 1 cut(s) 148
BsiHKAI GWGCWC 2 cut(s) 645, 1071
BsiHKCI CYCGRG 1 cut(s) 390
BsiSI CCGG 3 cut(s) 814, 893, 945
BslI CCNNNNNNNGG 2 cut(s) 143, 673
BsnI GGCC 3 cut(s) 147, 855, 948
BsoBI CYCGRG 1 cut(s) 390
Bsp1286I GDGCHC 3 cut(s) 645, 1043, 1071
Bsp143I GATC 4 cut(s) 65, 130, 262, 561
BspACI CCGC 9 cut(s) 88, 144, 383, 474, 638, 703, 720, 1130, 1170
BspANI GGCC 3 cut(s) 147, 855, 948
BspDI ATCGAT 1 cut(s) 1074
BspFNI CGCG 1 cut(s) 593
BspLI GGNNCC 2 cut(s) 812, 1244
BspOI GCTAGC 1 cut(s) 794
BspPI GGATC 2 cut(s) 73, 569
BspT107I GGYRCC 1 cut(s) 810
BsrDI GCAATG 1 cut(s) 262
BsrFI RCCGGY 2 cut(s) 813, 944
BsrI ACTGG 7 cut(s) 282, 351, 372, 857, 905, 1163, 1234
BssAI RCCGGY 2 cut(s) 813, 944
BssMI GATC 4 cut(s) 65, 130, 262, 561
BssNI GRCGYC 1 cut(s) 1148
BssSI CACGAG 2 cut(s) 683, 887
Bst2BI CACGAG 2 cut(s) 683, 887
Bst2UI CCWGG 2 cut(s) 517, 600
Bst4CI ACNGT 2 cut(s) 72, 573
Bst6I CTCTTC 1 cut(s) 627
BstACI GRCGYC 1 cut(s) 1148
BstC8I GCNNGC 2 cut(s) 792, 939
BstDEI CTNAG 2 cut(s) 656, 966
BstF5I GGATG 7 cut(s) 157, 186, 525, 742, 1033, 1125, 1200
BstFNI CGCG 1 cut(s) 593
BstHHI GCGC 1 cut(s) 593
BstKTI GATC 4 cut(s) 68, 133, 265, 564
BstMBI GATC 4 cut(s) 65, 130, 262, 561
BstMCI CGRYCG 1 cut(s) 148
BstMWI GCNNNNNNNGC 5 cut(s) 392, 626, 635, 1006, 1176
BstNI CCWGG 2 cut(s) 517, 600
BstNSI RCATGY 1 cut(s) 941
BstSCI CCNGG 2 cut(s) 515, 598
BstSFI CTRYAG 1 cut(s) 525
BstUI CGCG 1 cut(s) 593
BstV1I GCAGC 5 cut(s) 239, 242, 398, 495, 964
BstZI CGGCCG 1 cut(s) 145
Bsu15I ATCGAT 1 cut(s) 1074
BsuRI GGCC 3 cut(s) 147, 855, 948
BsuTUI ATCGAT 1 cut(s) 1074
BtgZI GCGATG 1 cut(s) 44
BtrI CACGTC 1 cut(s) 1204
BtsCI GGATG 7 cut(s) 157, 186, 525, 742, 1033, 1125, 1200
BtsIMutI CAGTG 3 cut(s) 68, 344, 365
Cac8I GCNNGC 2 cut(s) 792, 939
CfoI GCGC 1 cut(s) 593
Cfr10I RCCGGY 2 cut(s) 813, 944
Cfr13I GGNCC 3 cut(s) 816, 854, 970
ClaI ATCGAT 1 cut(s) 1074
CseI GACGC 1 cut(s) 1137
Csp6I GTAC 5 cut(s) 78, 102, 108, 181, 898
CspAI ACCGGT 1 cut(s) 813
CviAII CATG 6 cut(s) 93, 668, 844, 938, 1044, 1215
CviQI GTAC 5 cut(s) 78, 102, 108, 181, 898
DdeI CTNAG 2 cut(s) 656, 966
DpnI GATC 4 cut(s) 67, 132, 264, 563
DpnII GATC 4 cut(s) 65, 130, 262, 561
EaeI YGGCCR 2 cut(s) 145, 946
EagI CGGCCG 1 cut(s) 145
Eam1104I CTCTTC 1 cut(s) 627
EarI CTCTTC 1 cut(s) 627
EciI GGCGGA 1 cut(s) 653
EclXI CGGCCG 1 cut(s) 145
Eco24I GRGCYC 1 cut(s) 1043
Eco47I GGWCC 2 cut(s) 816, 970
Eco52I CGGCCG 1 cut(s) 145
Eco88I CYCGRG 1 cut(s) 390
EcoO109I RGGNCCY 1 cut(s) 970
EcoRII CCWGG 2 cut(s) 515, 598
EcoT38I GRGCYC 1 cut(s) 1043
FaeI CATG 6 cut(s) 96, 671, 847, 941, 1047, 1218
FatI CATG 6 cut(s) 92, 667, 843, 937, 1043, 1214
FauI CCCGC 3 cut(s) 710, 1123, 1163
FbaI TGATCA 2 cut(s) 130, 262
FblI GTMKAC 1 cut(s) 759
Fnu4HI GCNGC 8 cut(s) 88, 145, 228, 231, 384, 387, 484, 978
FokI GGATG 7 cut(s) 144, 173, 532, 749, 1040, 1132, 1207
FriOI GRGCYC 1 cut(s) 1043
Fsp4HI GCNGC 8 cut(s) 88, 145, 228, 231, 384, 387, 484, 978
FspBI CTAG 6 cut(s) 105, 111, 116, 200, 236, 791
GlaI GCGC 1 cut(s) 592
GluI GCNGC 8 cut(s) 88, 145, 228, 231, 384, 387, 484, 978
GsaI CCCAGC 1 cut(s) 1040
GsuI CTGGAG 4 cut(s) 389, 621, 1089, 1251
HaeIII GGCC 3 cut(s) 147, 855, 948
HapII CCGG 3 cut(s) 814, 893, 945
HgaI GACGC 1 cut(s) 1137
HhaI GCGC 1 cut(s) 593
Hin1I GRCGYC 1 cut(s) 1148
Hin1II CATG 6 cut(s) 96, 671, 847, 941, 1047, 1218
Hin6I GCGC 1 cut(s) 591
HinP1I GCGC 1 cut(s) 591
HincII GTYRAC 1 cut(s) 760
HindII GTYRAC 1 cut(s) 760
HinfI GANTC 4 cut(s) 37, 325, 465, 595
HpaII CCGG 3 cut(s) 814, 893, 945
HphI GGTGA 5 cut(s) 134, 308, 542, 706, 889
Hpy166II GTNNAC 2 cut(s) 760, 1115
Hpy188I TCNGA 1 cut(s) 464
Hpy188III TCNNGA 5 cut(s) 21, 116, 509, 887, 1106
Hpy8I GTNNAC 2 cut(s) 760, 1115
Hpy99I CGWCG 1 cut(s) 764
HpyAV CCTTC 5 cut(s) 278, 439, 544, 911, 1217
HpyCH4III ACNGT 2 cut(s) 72, 573
HpyCH4IV ACGT 2 cut(s) 1081, 1203
HpyCH4V TGCA 9 cut(s) 50, 62, 255, 772, 806, 843, 1009, 1179, 1207
HpyF10VI GCNNNNNNNGC 5 cut(s) 392, 626, 635, 1006, 1176
HpyF3I CTNAG 2 cut(s) 656, 966
HpySE526I ACGT 2 cut(s) 1081, 1203
Hsp92I GRCGYC 1 cut(s) 1148
Hsp92II CATG 6 cut(s) 96, 671, 847, 941, 1047, 1218
HspAI GCGC 1 cut(s) 591
Ksp22I TGATCA 2 cut(s) 130, 262
Kzo9I GATC 4 cut(s) 65, 130, 262, 561
LmnI GCTCC 3 cut(s) 588, 640, 1232
Lsp1109I GCAGC 5 cut(s) 239, 242, 398, 495, 964
LweI GCATC 5 cut(s) 21, 404, 510, 727, 781
MaeI CTAG 6 cut(s) 105, 111, 116, 200, 236, 791
MaeII ACGT 2 cut(s) 1081, 1203
MaeIII GTNAC 2 cut(s) 238, 606
MalI GATC 4 cut(s) 67, 132, 264, 563
MboI GATC 4 cut(s) 65, 130, 262, 561
MboII GAAGA 2 cut(s) 644, 926
MhlI GDGCHC 3 cut(s) 645, 1043, 1071
MluCI AATT 8 cut(s) 214, 250, 357, 377, 425, 828, 905, 994
MlyI GAGTC 2 cut(s) 319, 589
MmeI TCCRAC 1 cut(s) 525
MnlI CCTC 9 cut(s) 307, 596, 619, 628, 667, 983, 1018, 1111, 1185
MroXI GAANNNNTTC 1 cut(s) 412
MseI TTAA 1 cut(s) 429
MslI CAYNNNNRTG 2 cut(s) 1014, 1074
MspI CCGG 3 cut(s) 814, 893, 945
MspR9I CCNGG 2 cut(s) 517, 600
MvaI CCWGG 2 cut(s) 517, 600
MvnI CGCG 1 cut(s) 593
MwoI GCNNNNNNNGC 5 cut(s) 392, 626, 635, 1006, 1176
NdeII GATC 4 cut(s) 65, 130, 262, 561
NheI GCTAGC 1 cut(s) 790
NlaIII CATG 6 cut(s) 96, 671, 847, 941, 1047, 1218
NlaIV GGNNCC 2 cut(s) 812, 1244
NmeAIII GCCGAG 1 cut(s) 766
NmuCI GTSAC 1 cut(s) 238
NspI RCATGY 1 cut(s) 941
PaeI GCATGC 1 cut(s) 941
PaeR7I CTCGAG 1 cut(s) 390
PdmI GAANNNNTTC 1 cut(s) 412
PfeI GAWTC 2 cut(s) 37, 465
PfoI TCCNGGA 1 cut(s) 598
PinAI ACCGGT 1 cut(s) 813
PkrI GCNGC 8 cut(s) 89, 146, 229, 232, 385, 388, 485, 979
PleI GAGTC 2 cut(s) 319, 589
PpsI GAGTC 2 cut(s) 319, 589
PpuMI RGGWCCY 1 cut(s) 970
Psp1406I AACGTT 1 cut(s) 1081
Psp5II RGGWCCY 1 cut(s) 970
Psp6I CCWGG 2 cut(s) 515, 598
PspFI CCCAGC 1 cut(s) 1036
PspGI CCWGG 2 cut(s) 515, 598
PspN4I GGNNCC 2 cut(s) 812, 1244
PspPI GGNCC 3 cut(s) 816, 854, 970
PspPPI RGGWCCY 1 cut(s) 970
PspXI VCTCGAGB 1 cut(s) 390
RsaI GTAC 5 cut(s) 79, 103, 109, 182, 899
RsaNI GTAC 5 cut(s) 78, 102, 108, 181, 898
RseI CAYNNNNRTG 2 cut(s) 1014, 1074
SalI GTCGAC 1 cut(s) 758
SaqAI TTAA 1 cut(s) 429
SatI GCNGC 8 cut(s) 88, 145, 228, 231, 384, 387, 484, 978
Sau3AI GATC 4 cut(s) 65, 130, 262, 561
Sau96I GGNCC 3 cut(s) 816, 854, 970
ScaI AGTACT 4 cut(s) 79, 103, 109, 899
SchI GAGTC 2 cut(s) 319, 589
ScrFI CCNGG 2 cut(s) 517, 600
SduI GDGCHC 3 cut(s) 645, 1043, 1071
SfaNI GCATC 5 cut(s) 21, 404, 510, 727, 781
SfcI CTRYAG 1 cut(s) 525
Sfr274I CTCGAG 1 cut(s) 390
SinI GGWCC 2 cut(s) 816, 970
SlaI CTCGAG 1 cut(s) 390
SmiMI CAYNNNNRTG 2 cut(s) 1014, 1074
SmlI CTYRAG 1 cut(s) 390
SmoI CTYRAG 1 cut(s) 390
SpeI ACTAGT 3 cut(s) 104, 110, 235
SphI GCATGC 1 cut(s) 941
Sse9I AATT 8 cut(s) 214, 250, 357, 377, 425, 828, 905, 994
SsiI CCGC 9 cut(s) 88, 144, 383, 474, 638, 703, 720, 1130, 1170
SspMI CTAG 6 cut(s) 105, 111, 116, 200, 236, 791
StyD4I CCNGG 2 cut(s) 515, 598
TaaI ACNGT 2 cut(s) 72, 573
TaiI ACGT 2 cut(s) 1084, 1206
TaqI TCGA 4 cut(s) 391, 508, 759, 1074
TasI AATT 8 cut(s) 214, 250, 357, 377, 425, 828, 905, 994
TatI WGTACW 4 cut(s) 77, 101, 107, 897
TauI GCSGC 3 cut(s) 90, 147, 386
TfiI GAWTC 2 cut(s) 37, 465
Tru1I TTAA 1 cut(s) 429
Tru9I TTAA 1 cut(s) 429
TscAI CASTG 3 cut(s) 75, 351, 372
TseFI GTSAC 1 cut(s) 238
TseI GCWGC 5 cut(s) 227, 230, 386, 483, 977
Tsp45I GTSAC 1 cut(s) 238
TspDTI ATGAA 4 cut(s) 405, 860, 1092, 1211
TspGWI ACGGA 2 cut(s) 601, 1132
TspRI CASTG 3 cut(s) 75, 351, 372
VpaK11BI GGWCC 2 cut(s) 816, 970
XapI RAATTY 3 cut(s) 425, 828, 905
XbaI TCTAGA 1 cut(s) 115
XceI RCATGY 1 cut(s) 941
XhoI CTCGAG 1 cut(s) 390
XmiI GTMKAC 1 cut(s) 759
XmnI GAANNNNTTC 1 cut(s) 412
XspI CTAG 6 cut(s) 105, 111, 116, 200, 236, 791
ZrmI AGTACT 4 cut(s) 79, 103, 109, 899
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.