Rmu_sc0022339.1_g000002

Belongs to the glycosyltransferase 31 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0022339.1
OG0007606
Physical Location & Seq
Reverse (-)
4968 .. 5420
453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0022339.1_g000002.1.cds

Sequence Viewer

Length: 345 bp
atgagggggaaacaggtttcaggaaaggcgatgctgattctatgtgttgcaagtttttttgcaggatcactgttcagtactacaagccgcacatggagtagtactagtactagtctagatggtgatgatgatcaacctaatggcggccgtgaagctcatccatttcctatcgtttccaagtaccacatccacaaccacctagacgaaacagccaattctaaaggggcagcagcactagtcacacaaactaattgcaatgatgatcacaagcgaaaactggttgaaggaaaatctggtgatgatattatgggggaggtggcaaagactcatcaagctatcaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4094 Galactosyl_T RRM_1

Protein Analysis

114

Amino Acids

12.27

Weight (kDa)

7.01

Isoelectric Point (pI)

20.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 88, 144
AclWI GGATC 1 cut(s) 73
AcoI YGGCCR 1 cut(s) 145
AfaI GTAC 4 cut(s) 79, 103, 109, 182
AfiI CCNNNNNNNGG 1 cut(s) 143
AgsI TTSAA 1 cut(s) 284
AhlI ACTAGT 3 cut(s) 104, 110, 235
AluBI AGCT 2 cut(s) 155, 335
AluI AGCT 2 cut(s) 155, 335
AlwI GGATC 1 cut(s) 73
AoxI GGCC 1 cut(s) 145
ApeKI GCWGC 2 cut(s) 227, 230
AsuHPI GGTGA 2 cut(s) 134, 308
BbvI GCAGC 2 cut(s) 239, 242
BccI CCATC 1 cut(s) 113
BceAI ACGGC 1 cut(s) 132
BclI TGATCA 2 cut(s) 130, 262
BcuI ACTAGT 3 cut(s) 104, 110, 235
BfaI CTAG 5 cut(s) 105, 111, 116, 200, 236
BisI GCNGC 4 cut(s) 88, 145, 228, 231
BlsI GCNGC 4 cut(s) 89, 146, 229, 232
BmcAI AGTACT 3 cut(s) 79, 103, 109
BmsI GCATC 1 cut(s) 21
BsaBI GATNNNNATC 1 cut(s) 129
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse1I ACTGG 1 cut(s) 282
Bse3DI GCAATG 1 cut(s) 262
Bse8I GATNNNNATC 1 cut(s) 129
BseGI GGATG 2 cut(s) 157, 186
BseJI GATNNNNATC 1 cut(s) 129
BseLI CCNNNNNNNGG 1 cut(s) 143
BseMI GCAATG 1 cut(s) 262
BseNI ACTGG 1 cut(s) 282
BseX3I CGGCCG 1 cut(s) 145
BseXI GCAGC 2 cut(s) 239, 242
Bsh1285I CGRYCG 1 cut(s) 148
BshFI GGCC 1 cut(s) 147
BsiEI CGRYCG 1 cut(s) 148
BslI CCNNNNNNNGG 1 cut(s) 143
BsnI GGCC 1 cut(s) 147
Bsp143I GATC 3 cut(s) 65, 130, 262
BspACI CCGC 2 cut(s) 88, 144
BspANI GGCC 1 cut(s) 147
BspPI GGATC 1 cut(s) 73
BsrDI GCAATG 1 cut(s) 262
BsrI ACTGG 1 cut(s) 282
BssMI GATC 3 cut(s) 65, 130, 262
Bst4CI ACNGT 1 cut(s) 72
BstF5I GGATG 2 cut(s) 157, 186
BstKTI GATC 3 cut(s) 68, 133, 265
BstMBI GATC 3 cut(s) 65, 130, 262
BstMCI CGRYCG 1 cut(s) 148
BstV1I GCAGC 2 cut(s) 239, 242
BstZI CGGCCG 1 cut(s) 145
BsuRI GGCC 1 cut(s) 147
BtgZI GCGATG 1 cut(s) 44
BtsCI GGATG 2 cut(s) 157, 186
BtsIMutI CAGTG 1 cut(s) 68
Csp6I GTAC 4 cut(s) 78, 102, 108, 181
CviAII CATG 1 cut(s) 93
CviJI RGCY 5 cut(s) 87, 147, 155, 212, 335
CviKI_1 RGCY 5 cut(s) 87, 147, 155, 212, 335
CviQI GTAC 4 cut(s) 78, 102, 108, 181
DpnI GATC 3 cut(s) 67, 132, 264
DpnII GATC 3 cut(s) 65, 130, 262
EaeI YGGCCR 1 cut(s) 145
EagI CGGCCG 1 cut(s) 145
EclXI CGGCCG 1 cut(s) 145
Eco52I CGGCCG 1 cut(s) 145
FaeI CATG 1 cut(s) 96
FaiI YATR 3 cut(s) 43, 94, 308
FatI CATG 1 cut(s) 92
FbaI TGATCA 2 cut(s) 130, 262
Fnu4HI GCNGC 4 cut(s) 88, 145, 228, 231
FokI GGATG 2 cut(s) 144, 173
Fsp4HI GCNGC 4 cut(s) 88, 145, 228, 231
FspBI CTAG 5 cut(s) 105, 111, 116, 200, 236
GluI GCNGC 4 cut(s) 88, 145, 228, 231
HaeIII GGCC 1 cut(s) 147
Hin1II CATG 1 cut(s) 96
HinfI GANTC 2 cut(s) 37, 325
HphI GGTGA 2 cut(s) 134, 308
Hpy188III TCNNGA 2 cut(s) 21, 116
HpyAV CCTTC 1 cut(s) 278
HpyCH4III ACNGT 1 cut(s) 72
HpyCH4V TGCA 3 cut(s) 50, 62, 255
Hsp92II CATG 1 cut(s) 96
Ksp22I TGATCA 2 cut(s) 130, 262
Kzo9I GATC 3 cut(s) 65, 130, 262
LpnPI CCDG 4 cut(s) 6, 48, 263, 279
Lsp1109I GCAGC 2 cut(s) 239, 242
LweI GCATC 1 cut(s) 21
MaeI CTAG 5 cut(s) 105, 111, 116, 200, 236
MaeIII GTNAC 1 cut(s) 238
MalI GATC 3 cut(s) 67, 132, 264
MboI GATC 3 cut(s) 65, 130, 262
MluCI AATT 2 cut(s) 214, 250
MlyI GAGTC 1 cut(s) 319
MnlI CCTC 1 cut(s) 307
NdeII GATC 3 cut(s) 65, 130, 262
NlaIII CATG 1 cut(s) 96
NmuCI GTSAC 1 cut(s) 238
PfeI GAWTC 1 cut(s) 37
PkrI GCNGC 4 cut(s) 89, 146, 229, 232
PleI GAGTC 1 cut(s) 319
PpsI GAGTC 1 cut(s) 319
RsaI GTAC 4 cut(s) 79, 103, 109, 182
RsaNI GTAC 4 cut(s) 78, 102, 108, 181
SatI GCNGC 4 cut(s) 88, 145, 228, 231
Sau3AI GATC 3 cut(s) 65, 130, 262
ScaI AGTACT 3 cut(s) 79, 103, 109
SchI GAGTC 1 cut(s) 319
SetI ASST 6 cut(s) 18, 139, 157, 201, 318, 337
SfaNI GCATC 1 cut(s) 21
SpeI ACTAGT 3 cut(s) 104, 110, 235
Sse9I AATT 2 cut(s) 214, 250
SsiI CCGC 2 cut(s) 88, 144
SspMI CTAG 5 cut(s) 105, 111, 116, 200, 236
TaaI ACNGT 1 cut(s) 72
TasI AATT 2 cut(s) 214, 250
TatI WGTACW 3 cut(s) 77, 101, 107
TauI GCSGC 2 cut(s) 90, 147
TfiI GAWTC 1 cut(s) 37
TscAI CASTG 1 cut(s) 75
TseFI GTSAC 1 cut(s) 238
TseI GCWGC 2 cut(s) 227, 230
Tsp45I GTSAC 1 cut(s) 238
TspRI CASTG 1 cut(s) 75
XbaI TCTAGA 1 cut(s) 115
XspI CTAG 5 cut(s) 105, 111, 116, 200, 236
ZrmI AGTACT 3 cut(s) 79, 103, 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.