AT1G42440

pre-rRNA-processing protein TSR1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010916
Physical Location & Seq
Reverse (-)
15895197 .. 15900105
4909 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G42440.1

Sequence Viewer

Length: 2382 bp
ATGGGACGCTCTCGAGTTCAAGTTAACAAAGCTCACAAGACTCGTTTCTCCTCTAAATCTTCTCGTAATCTCCATAGAACCAACCTTCAAGATAGTGGCCGGATTGGGAAATCGGATAGTAACTATGTTAAAGGAGCTAAAGCTGCTCGTGTTCAACGTGGTAAGATGCTTAGAGAGCAGAAGAGAGCAGCAGTTTTGAAGGAGAAGAGAGCATCAGGAGGAATTAACAGTGCTCCTCGTGTTATCGTTTTGTTTCCTCTCTCTGCTTCTGTGGAATTGAATTCACTTGGTGAAGATGTTTTGAAGTTGTTATCTTCTGATGGTTCTGGAATTGCTTCTTCGACAGTTGCATCTTCTGAGTATAAGCTACGAGCAACTGTGTTAAAGGCGCCTCATGGGGATCTTCTGACATGTATGGAAATGGCCAAGGTTGCTGATTTGATGGCTTTTGTTGCATCTGCAAGTGCTCCGTGGGAAGAGAATAGCTCTAACTTCATAGATTCTTTCGGAAGTCAGTGTCTTTCTGTGTTTAGATCAATTGGTCTACCAAGCACTACTGTGTTGATCCGTGATTTGCCCAGTGATGTGAAAAAGAAAAATGAGATGAAAAAGATGTGTGCCTCTCAACTTGCTTCTGAATTTCCTGAGGATTGTAAGTTTTATCCAGCAGATACCAGAGATGAGTTGCATAAGTTTATGTGGTTATTCAAGGCGCAAAGGCTTACTGTGCCTCACTGGCGAAGTCAACGATCATACATTGTGGCTCGCAAGGCTGGGATGCTGGTGGATGATGAAAGCTCAGGAAAGTGCACTCTACTTCTCTCTGGTTACTTGCGTGCTCGCAAACTGTCTGTAAATCAACTGGTCCATGTTTCTGGCGTTGGGGATTTTCAATTCTCCAAAATTGAAGTGCTGAAGGATCCATTTCCTTTGAATGAAAGGAAAAATCAGAATTCCATGGAATTAGATGATTCACATGATGAAGAGGTATTGAAGTCTCTGGTTCCTGATCCCATGAAACAAGAGCCTTTAGTAATTGAAAACACTCCAGATCCTTTAGCAGGGGAACAGACATGGCCAACAGAGGAAGAAATGGCTGAGGCTGACAAAAATCAGAAGCAGGGCAGGCTAAAGAAGAAGACTTTGCCGCGAGGGACTTCAGAATATCAGGCTGCTTGGATTGTGGATGAAACAGATGAAGAGGATTCCGATAATGGTGATTCTGATGATAATGGTATGGTATTGGATAGAGGAGAGGATTCCAATCAAGAAGGAATGTATGACCAAGAATTTGAGGATGACGGAAAATCATTGAACCTGCGGGATATTGATACTGAAACTCAGAATGAATCCGAAATGGTGGACGATGAAGACTTGACAGAAGAACAAATTAAGGATGAAATCAAGAAAATCAAAGAGGCATATGCTGATGACGAAGAATTTCCAGATGAAGTAGAGACTCCCATTGATGTTCCTGCAAGAAGACGTTTTGCAAAGTACAGGGGTCTTAAATCCTTCAGAACCTCCTCGTGGGATCCAAATGAGTCTTTACCTCAGGACTATGCTAGAATTTTTGCTTTTGATAATGTCGCAAGGACTCAAAAGCTTGTGCTCAAGCAAGCCCTGAAGATGGAAGAAGAAGACAGAGATGATTGTGTACCAATTGGGTCATATGTACGGCTGCATATTAAAGAAGTGCCTCTTGGTGCTGCCTCTAAACTATCTTCTCTTGTGAACACAACGAAACCAATTATAGGATTTGGGCTTCTGCAGCATGAATCCAAGATGTCGGTTCTGCATTTTAGCGTAAAGAAGTATGATGGTTACGAAGCTCCTATTAAAACAAAAGAAGAGCTAATGTTCCATGTTGGTTTCCGTCAATTCATTGCAAGGCCGGTATTTGCGACCGACAATTTCAGCTCAGACAAGCACAAGATGGAGAGATTCCTGCATCCAGGGTGTTTCTCGTTGGCTTCAATATACGGCCCCATATCTTTCCCACCCCTTCCTTTGGTAGTTCTGAAGATTTCTGAAGGGTCGGATCCTCCTGCCATTGCTGCCCTTGGTTCCTTGAAAAGCGTAGAACCCAACAAAATAATCTTAAAGAAGATAATATTAACTGGGTACCCTCAGAGAGTATCGAAAATGAAAGCTTCAGTCAGATATATGTTCCACAACCCCGAAGACGTGAAATGGTTCAAGCCTGTTGAAGTATGGTCAAAATGCGGGCGTCGTGGTCGCGTGAAGGAACCAGTAGGCACACATGGGGCAATGAAATGCATATTCAATGGAGTGGTTCAACAACATGACGTAGTGTGCATGAACTTGTACAAGCGCGCTTATCCCAAGTGGCCTGAACGTCTGTACCCACAGCTTCTCTGA

Protein Analysis

793

Amino Acids

89.45

Weight (kDa)

6.79

Isoelectric Point (pI)

44.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AARP2CN PF08142 244 - 308 2.6e-20 AARP2CN (NUC121) domain
RIBIOP_C PF04950 485 - 782 1.1e-107 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010916)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42440
fragaria_vesca FvH4_5g12620 FvH4_5g12620 FvH4_5g12620
malus_domestica MD06G1211900.v1.1 MD14G1222500.v1.1
prunus_persica Prupe.5G218100_v2.0.a1
pyrus_communis pycom14g18410 pycom14g18420
rosa_chinensis RchiOBHm_Chr7g0184701
rosa_laevigata RLG00000004958
rosa_multiflora Rmu_ssc0000289.1_g000022
rosa_roxburghii Rroxscaffold_3G00269420
rosa_rugosa Rorug06G0464600 Rorug06G0464600
rosa_samantha Rh7AG078400 Rh7BG068900 Rh7CG069700 Rh7DG069100
rosa_wichuraiana Rw7G005700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1326
Acc65I GGTACC 1 cut(s) 2124
AccB1I GGYRCC 2 cut(s) 388, 2124
AccI GTMKAC 1 cut(s) 544
AccII CGCG 3 cut(s) 1150, 2241, 2337
AciI CCGC 3 cut(s) 1148, 1321, 2226
AcoI YGGCCR 3 cut(s) 97, 423, 1076
AcsI RAATTY 6 cut(s) 280, 638, 952, 1289, 1439, 1569
AcuI CTGAAG 7 cut(s) 935, 1143, 1501, 1646, 2042, 2052, 2139
AcyI GRCGYC 2 cut(s) 389, 2230
AdeI CACNNNGTG 1 cut(s) 290
AfaI GTAC 6 cut(s) 1499, 1659, 1677, 2126, 2330, 2366
AfiI CCNNNNNNNGG 5 cut(s) 1061, 1530, 1630, 1754, 2011
AflIII ACRYGT 1 cut(s) 410
AjiI CACGTC 1 cut(s) 2188
AjnI CCWGG 1 cut(s) 1954
AjuI GAANNNNNNNTTGG 2 cut(s) 1686, 1718
AleI CACNNNNGTG 1 cut(s) 557
Alw21I GWGCWC 5 cut(s) 235, 469, 812, 841, 1614
Alw26I GTCTC 2 cut(s) 1002, 1451
Alw44I GTGCAC 1 cut(s) 808
Ama87I CYCGRG 1 cut(s) 12
AoxI GGCC 6 cut(s) 97, 423, 1076, 1892, 1984, 2351
ApaLI GTGCAC 1 cut(s) 808
ApeKI GCWGC 7 cut(s) 143, 188, 1172, 1681, 1709, 1771, 2057
ApoI RAATTY 6 cut(s) 280, 638, 952, 1289, 1439, 1569
ArsI GACNNNNNNTTYG 2 cut(s) 1274, 1306
Asp700I GAANNNNTTC 3 cut(s) 334, 1440, 2195
Asp718I GGTACC 1 cut(s) 2124
AspLEI GCGC 4 cut(s) 391, 715, 2337, 2339
AspS9I GGNCC 2 cut(s) 865, 1985
AsuHPI GGTGA 2 cut(s) 302, 1229
AvaI CYCGRG 1 cut(s) 12
AvaII GGWCC 1 cut(s) 865
AxyI CCTNAGG 2 cut(s) 645, 1554
BaeGI GKGCMC 1 cut(s) 812
BaeI ACNNNNGTAYC 2 cut(s) 2348, 2381
BalI TGGCCA 2 cut(s) 425, 1078
BamHI GGATCC 3 cut(s) 919, 1534, 2041
BanI GGYRCC 2 cut(s) 388, 2124
BauI CACGAG 3 cut(s) 147, 237, 1528
BbsI GAAGAC 5 cut(s) 1145, 1377, 1489, 1647, 2190
Bbv12I GWGCWC 5 cut(s) 235, 469, 812, 841, 1614
BbvCI CCTCAGC 1 cut(s) 1098
BbvI GCAGC 7 cut(s) 130, 200, 1159, 1668, 1696, 1783, 2044
BccI CCATC 5 cut(s) 314, 436, 1624, 1814, 1930
BceAI ACGGC 2 cut(s) 1694, 1999
BciT130I CCWGG 1 cut(s) 1956
BcoDI GTCTC 2 cut(s) 1002, 1451
BfaI CTAG 1 cut(s) 1566
BfmI CTRYAG 1 cut(s) 1769
BfoI RGCGCY 1 cut(s) 392
BfuAI ACCTGC 1 cut(s) 1326
BglI GCCNNNNNGGC 1 cut(s) 736
BisI GCNGC 8 cut(s) 144, 189, 1148, 1173, 1682, 1710, 1772, 2058
BlsI GCNGC 8 cut(s) 145, 190, 1149, 1174, 1683, 1711, 1773, 2059
Bme1390I CCNGG 1 cut(s) 1956
Bme18I GGWCC 1 cut(s) 865
BmeT110I CYCGRG 1 cut(s) 12
BmgBI CACGTC 1 cut(s) 2188
BmgT120I GGNCC 2 cut(s) 865, 1985
BmiI GGNNCC 9 cut(s) 390, 921, 1005, 1536, 1987, 2043, 2068, 2126, 2250
BmrFI CCNGG 1 cut(s) 1956
BmrI ACTGGG 2 cut(s) 573, 2130
BmsI GCATC 6 cut(s) 156, 221, 359, 464, 768, 1960
BmuI ACTGGG 2 cut(s) 573, 2130
BpiI GAAGAC 5 cut(s) 1145, 1377, 1489, 1647, 2190
BplI GAGNNNNNCTC 2 cut(s) 470, 502
BpmI CTGGAG 1 cut(s) 1032
Bpu10I CCTNAGC 2 cut(s) 799, 1098
BpuEI CTTGAG 1 cut(s) 1598
BsaBI GATNNNNATC 1 cut(s) 1263
BsaHI GRCGYC 2 cut(s) 389, 2230
BsaJI CCNNGG 5 cut(s) 426, 470, 957, 1955, 2062
Bsc4I CCNNNNNNNGG 5 cut(s) 1061, 1530, 1630, 1754, 2011
Bse118I RCCGGY 1 cut(s) 1894
Bse1I ACTGG 5 cut(s) 579, 740, 867, 2125, 2252
Bse21I CCTNAGG 2 cut(s) 645, 1554
Bse3DI GCAATG 3 cut(s) 1884, 2052, 2277
Bse8I GATNNNNATC 1 cut(s) 1263
BseBI CCWGG 1 cut(s) 1956
BseDI CCNNGG 5 cut(s) 426, 470, 957, 1955, 2062
BseGI GGATG 6 cut(s) 783, 793, 1192, 1303, 1402, 1951
BseJI GATNNNNATC 1 cut(s) 1263
BseLI CCNNNNNNNGG 5 cut(s) 1061, 1530, 1630, 1754, 2011
BseMI GCAATG 3 cut(s) 1884, 2052, 2277
BseMII CTCAG 8 cut(s) 348, 636, 813, 1089, 1355, 1568, 1935, 2144
BseNI ACTGG 5 cut(s) 579, 740, 867, 2125, 2252
BsePI GCGCGC 1 cut(s) 2335
BseRI GAGGAG 4 cut(s) 40, 225, 1266, 1516
BseSI GKGCMC 1 cut(s) 812
BseXI GCAGC 7 cut(s) 130, 200, 1159, 1668, 1696, 1783, 2044
BseYI CCCAGC 1 cut(s) 773
Bsh1236I CGCG 3 cut(s) 1150, 2241, 2337
Bsh1285I CGRYCG 1 cut(s) 1908
BshFI GGCC 6 cut(s) 99, 425, 1078, 1894, 1986, 2353
BshNI GGYRCC 2 cut(s) 388, 2124
BsiEI CGRYCG 1 cut(s) 1908
BsiHKAI GWGCWC 5 cut(s) 235, 469, 812, 841, 1614
BsiHKCI CYCGRG 1 cut(s) 12
BsiSI CCGG 2 cut(s) 100, 1895
BslFI GGGAC 2 cut(s) 18, 1168
BslI CCNNNNNNNGG 5 cut(s) 1061, 1530, 1630, 1754, 2011
BsmAI GTCTC 2 cut(s) 1002, 1451
BsmFI GGGAC 2 cut(s) 18, 1168
BsnI GGCC 6 cut(s) 99, 425, 1078, 1894, 1986, 2353
BsoBI CYCGRG 1 cut(s) 12
Bsp1286I GDGCHC 5 cut(s) 235, 469, 812, 841, 1614
Bsp1407I TGTACA 1 cut(s) 2328
Bsp143I GATC 9 cut(s) 400, 533, 564, 749, 919, 1009, 1051, 1534, 2041
Bsp19I CCATGG 1 cut(s) 957
BspACI CCGC 3 cut(s) 1148, 1321, 2226
BspANI GGCC 6 cut(s) 99, 425, 1078, 1894, 1986, 2353
BspCNI CTCAG 8 cut(s) 349, 637, 812, 1090, 1354, 1567, 1934, 2143
BspFNI CGCG 3 cut(s) 1150, 2241, 2337
BspLI GGNNCC 9 cut(s) 390, 921, 1005, 1536, 1987, 2043, 2068, 2126, 2250
BspMAI CTGCAG 1 cut(s) 1773
BspMI ACCTGC 1 cut(s) 1326
BspQI GCTCTTC 1 cut(s) 1845
BspT107I GGYRCC 2 cut(s) 388, 2124
BsrDI GCAATG 3 cut(s) 1884, 2052, 2277
BsrFI RCCGGY 1 cut(s) 1894
BsrGI TGTACA 1 cut(s) 2328
BsrI ACTGG 5 cut(s) 579, 740, 867, 2125, 2252
BssAI RCCGGY 1 cut(s) 1894
BssECI CCNNGG 5 cut(s) 426, 470, 957, 1955, 2062
BssHII GCGCGC 1 cut(s) 2335
BssMI GATC 9 cut(s) 400, 533, 564, 749, 919, 1009, 1051, 1534, 2041
BssNI GRCGYC 2 cut(s) 389, 2230
BssSI CACGAG 3 cut(s) 147, 237, 1528
BssT1I CCWWGG 3 cut(s) 426, 957, 2062
Bst2BI CACGAG 3 cut(s) 147, 237, 1528
Bst2UI CCWGG 1 cut(s) 1956
Bst4CI ACNGT 6 cut(s) 230, 346, 379, 559, 727, 849
Bst6I CTCTTC 6 cut(s) 176, 200, 471, 978, 1194, 1845
BstACI GRCGYC 2 cut(s) 389, 2230
BstAUI TGTACA 1 cut(s) 2328
BstC8I GCNNGC 7 cut(s) 766, 837, 841, 1127, 1620, 2228, 2337
BstDEI CTNAG 9 cut(s) 170, 357, 645, 799, 1098, 1341, 1554, 1921, 2130
BstDSI CCRYGG 2 cut(s) 470, 957
BstENI CCTNNNNNAGG 1 cut(s) 1059
BstF5I GGATG 6 cut(s) 783, 793, 1192, 1303, 1402, 1951
BstFNI CGCG 3 cut(s) 1150, 2241, 2337
BstH2I RGCGCY 1 cut(s) 392
BstHHI GCGC 4 cut(s) 391, 715, 2337, 2339
BstKTI GATC 9 cut(s) 403, 536, 567, 752, 922, 1012, 1054, 1537, 2044
BstMAI GTCTC 2 cut(s) 1002, 1451
BstMBI GATC 9 cut(s) 400, 533, 564, 749, 919, 1009, 1051, 1534, 2041
BstMCI CGRYCG 1 cut(s) 1908
BstNI CCWGG 1 cut(s) 1956
BstNSI RCATGY 1 cut(s) 414
BstSCI CCNGG 1 cut(s) 1954
BstSFI CTRYAG 1 cut(s) 1769
BstSLI GKGCMC 1 cut(s) 812
BstUI CGCG 3 cut(s) 1150, 2241, 2337
BstV1I GCAGC 7 cut(s) 130, 200, 1159, 1668, 1696, 1783, 2044
BstV2I GAAGAC 5 cut(s) 1145, 1377, 1489, 1647, 2190
BstX2I RGATCY 5 cut(s) 400, 919, 1051, 1534, 2041
BstXI CCANNNNNNTGG 1 cut(s) 875
BstYI RGATCY 5 cut(s) 400, 919, 1051, 1534, 2041
Bsu36I CCTNAGG 2 cut(s) 645, 1554
BsuRI GGCC 6 cut(s) 99, 425, 1078, 1894, 1986, 2353
BtgI CCRYGG 2 cut(s) 470, 957
BtrI CACGTC 1 cut(s) 2188
BtsCI GGATG 6 cut(s) 783, 793, 1192, 1303, 1402, 1951
BtsIMutI CAGTG 4 cut(s) 235, 521, 586, 733
BveI ACCTGC 1 cut(s) 1326
Cac8I GCNNGC 7 cut(s) 766, 837, 841, 1127, 1620, 2228, 2337
CfoI GCGC 4 cut(s) 391, 715, 2337, 2339
Cfr10I RCCGGY 1 cut(s) 1894
Cfr13I GGNCC 2 cut(s) 865, 1985
CseI GACGC 2 cut(s) 15, 2219
Csp6I GTAC 6 cut(s) 1498, 1658, 1676, 2125, 2329, 2365
CviQI GTAC 6 cut(s) 1498, 1658, 1676, 2125, 2329, 2365
DdeI CTNAG 9 cut(s) 170, 357, 645, 799, 1098, 1341, 1554, 1921, 2130
DinI GGCGCC 1 cut(s) 390
DpnI GATC 9 cut(s) 402, 535, 566, 751, 921, 1011, 1053, 1536, 2043
DpnII GATC 9 cut(s) 400, 533, 564, 749, 919, 1009, 1051, 1534, 2041
DraIII CACNNNGTG 1 cut(s) 290
EaeI YGGCCR 3 cut(s) 97, 423, 1076
Eam1104I CTCTTC 6 cut(s) 176, 200, 471, 978, 1194, 1845
EarI CTCTTC 6 cut(s) 176, 200, 471, 978, 1194, 1845
Eco130I CCWWGG 3 cut(s) 426, 957, 2062
Eco47I GGWCC 1 cut(s) 865
Eco57I CTGAAG 7 cut(s) 935, 1143, 1501, 1646, 2042, 2052, 2139
Eco81I CCTNAGG 2 cut(s) 645, 1554
Eco88I CYCGRG 1 cut(s) 12
EcoNI CCTNNNNNAGG 1 cut(s) 1059
EcoRI GAATTC 2 cut(s) 280, 952
EcoRII CCWGG 1 cut(s) 1954
EcoT14I CCWWGG 3 cut(s) 426, 957, 2062
EcoT22I ATGCAT 1 cut(s) 2282
EgeI GGCGCC 1 cut(s) 390
EheI GGCGCC 1 cut(s) 390
ErhI CCWWGG 3 cut(s) 426, 957, 2062
FalI AAGNNNNNCTT 2 cut(s) 1686, 1718
FaqI GGGAC 2 cut(s) 18, 1168
FauI CCCGC 2 cut(s) 1314, 2219
FauNDI CATATG 2 cut(s) 1423, 1672
FblI GTMKAC 1 cut(s) 544
Fnu4HI GCNGC 8 cut(s) 144, 189, 1148, 1173, 1682, 1710, 1772, 2058
FokI GGATG 6 cut(s) 790, 800, 1199, 1310, 1409, 1938
Fsp4HI GCNGC 8 cut(s) 144, 189, 1148, 1173, 1682, 1710, 1772, 2058
FspBI CTAG 1 cut(s) 1566
GlaI GCGC 4 cut(s) 390, 714, 2336, 2338
GluI GCNGC 8 cut(s) 144, 189, 1148, 1173, 1682, 1710, 1772, 2058
GsaI CCCAGC 1 cut(s) 777
GsuI CTGGAG 1 cut(s) 1032
HaeII RGCGCY 1 cut(s) 392
HaeIII GGCC 6 cut(s) 99, 425, 1078, 1894, 1986, 2353
HapII CCGG 2 cut(s) 100, 1895
HgaI GACGC 2 cut(s) 15, 2219
HhaI GCGC 4 cut(s) 391, 715, 2337, 2339
Hin1I GRCGYC 2 cut(s) 389, 2230
Hin6I GCGC 4 cut(s) 389, 713, 2335, 2337
HinP1I GCGC 4 cut(s) 389, 713, 2335, 2337
HincII GTYRAC 2 cut(s) 25, 746
HindII GTYRAC 2 cut(s) 25, 746
HindIII AAGCTT 2 cut(s) 1604, 2151
HpaI GTTAAC 1 cut(s) 25
HpaII CCGG 2 cut(s) 100, 1895
HphI GGTGA 2 cut(s) 302, 1229
Hpy166II GTNNAC 7 cut(s) 25, 545, 746, 810, 1363, 1658, 1735
Hpy8I GTNNAC 7 cut(s) 25, 545, 746, 810, 1363, 1658, 1735
Hpy99I CGWCG 1 cut(s) 2235
HpyAV CCTTC 8 cut(s) 95, 193, 910, 1265, 1525, 2015, 2027, 2239
HpyCH4III ACNGT 6 cut(s) 230, 346, 379, 559, 727, 849
HpyCH4IV ACGT 5 cut(s) 157, 1486, 2187, 2310, 2359
HpyF3I CTNAG 9 cut(s) 170, 357, 645, 799, 1098, 1341, 1554, 1921, 2130
HpySE526I ACGT 5 cut(s) 157, 1486, 2187, 2310, 2359
Hsp92I GRCGYC 2 cut(s) 389, 2230
HspAI GCGC 4 cut(s) 389, 713, 2335, 2337
KasI GGCGCC 1 cut(s) 388
KpnI GGTACC 1 cut(s) 2128
KspAI GTTAAC 1 cut(s) 25
Kzo9I GATC 9 cut(s) 400, 533, 564, 749, 919, 1009, 1051, 1534, 2041
LguI GCTCTTC 1 cut(s) 1845
LmnI GCTCC 4 cut(s) 134, 238, 472, 1837
Lsp1109I GCAGC 7 cut(s) 130, 200, 1159, 1668, 1696, 1783, 2044
LweI GCATC 6 cut(s) 156, 221, 359, 464, 768, 1960
MaeI CTAG 1 cut(s) 1566
MaeII ACGT 5 cut(s) 157, 1486, 2187, 2310, 2359
MaeIII GTNAC 3 cut(s) 119, 827, 1823
MalI GATC 9 cut(s) 402, 535, 566, 751, 921, 1011, 1053, 1536, 2043
MboI GATC 9 cut(s) 400, 533, 564, 749, 919, 1009, 1051, 1534, 2041
MfeI CAATTG 2 cut(s) 537, 1662
MflI RGATCY 5 cut(s) 400, 919, 1051, 1534, 2041
MhlI GDGCHC 5 cut(s) 235, 469, 812, 841, 1614
MlsI TGGCCA 2 cut(s) 425, 1078
MluNI TGGCCA 2 cut(s) 425, 1078
Mly113I GGCGCC 1 cut(s) 389
MlyI GAGTC 4 cut(s) 34, 1453, 1553, 1591
MmeI TCCRAC 1 cut(s) 2019
Mox20I TGGCCA 2 cut(s) 425, 1078
Mph1103I ATGCAT 1 cut(s) 2282
MroXI GAANNNNTTC 3 cut(s) 334, 1440, 2195
MscI TGGCCA 2 cut(s) 425, 1078
MslI CAYNNNNRTG 1 cut(s) 557
Msp20I TGGCCA 2 cut(s) 425, 1078
MspI CCGG 2 cut(s) 100, 1895
MspR9I CCNGG 1 cut(s) 1956
MunI CAATTG 2 cut(s) 537, 1662
MvaI CCWGG 1 cut(s) 1956
MvnI CGCG 3 cut(s) 1150, 2241, 2337
NarI GGCGCC 1 cut(s) 389
NcoI CCATGG 1 cut(s) 957
NdeI CATATG 2 cut(s) 1423, 1672
NdeII GATC 9 cut(s) 400, 533, 564, 749, 919, 1009, 1051, 1534, 2041
NlaIV GGNNCC 9 cut(s) 390, 921, 1005, 1536, 1987, 2043, 2068, 2126, 2250
NsiI ATGCAT 1 cut(s) 2282
NspI RCATGY 1 cut(s) 414
OliI CACNNNNGTG 1 cut(s) 557
PaeR7I CTCGAG 1 cut(s) 12
PauI GCGCGC 1 cut(s) 2335
PciI ACATGT 1 cut(s) 410
PciSI GCTCTTC 1 cut(s) 1845
PcsI WCGNNNNNNNCGW 1 cut(s) 154
PdmI GAANNNNTTC 3 cut(s) 334, 1440, 2195
PfeI GAWTC 8 cut(s) 500, 971, 1205, 1220, 1259, 1349, 1778, 1944
PkrI GCNGC 8 cut(s) 145, 190, 1149, 1174, 1683, 1711, 1773, 2059
PleI GAGTC 4 cut(s) 34, 1453, 1552, 1591
PluTI GGCGCC 1 cut(s) 392
PpsI GAGTC 4 cut(s) 34, 1453, 1552, 1591
PscI ACATGT 1 cut(s) 410
Psp6I CCWGG 1 cut(s) 1954
PspFI CCCAGC 1 cut(s) 773
PspGI CCWGG 1 cut(s) 1954
PspN4I GGNNCC 9 cut(s) 390, 921, 1005, 1536, 1987, 2043, 2068, 2126, 2250
PspPI GGNCC 2 cut(s) 865, 1985
PstI CTGCAG 1 cut(s) 1773
PsuI RGATCY 5 cut(s) 400, 919, 1051, 1534, 2041
PteI GCGCGC 1 cut(s) 2335
RsaI GTAC 6 cut(s) 1499, 1659, 1677, 2126, 2330, 2366
RsaNI GTAC 6 cut(s) 1498, 1658, 1676, 2125, 2329, 2365
RseI CAYNNNNRTG 1 cut(s) 557
SapI GCTCTTC 1 cut(s) 1845
SatI GCNGC 8 cut(s) 144, 189, 1148, 1173, 1682, 1710, 1772, 2058
Sau3AI GATC 9 cut(s) 400, 533, 564, 749, 919, 1009, 1051, 1534, 2041
Sau96I GGNCC 2 cut(s) 865, 1985
SchI GAGTC 4 cut(s) 34, 1453, 1553, 1591
ScrFI CCNGG 1 cut(s) 1956
SduI GDGCHC 5 cut(s) 235, 469, 812, 841, 1614
SfaNI GCATC 6 cut(s) 156, 221, 359, 464, 768, 1960
SfcI CTRYAG 1 cut(s) 1769
SfoI GGCGCC 1 cut(s) 390
Sfr274I CTCGAG 1 cut(s) 12
SinI GGWCC 1 cut(s) 865
SlaI CTCGAG 1 cut(s) 12
SmiMI CAYNNNNRTG 1 cut(s) 557
SmlI CTYRAG 2 cut(s) 12, 1613
SmoI CTYRAG 2 cut(s) 12, 1613
SsiI CCGC 3 cut(s) 1148, 1321, 2226
SspDI GGCGCC 1 cut(s) 388
SspI AATATT 1 cut(s) 2115
SspMI CTAG 1 cut(s) 1566
StyD4I CCNGG 1 cut(s) 1954
StyI CCWWGG 3 cut(s) 426, 957, 2062
TaaI ACNGT 6 cut(s) 230, 346, 379, 559, 727, 849
TaiI ACGT 5 cut(s) 160, 1489, 2190, 2313, 2362
TaqI TCGA 3 cut(s) 13, 341, 2141
TaqII GACCGA 1 cut(s) 1922
TatI WGTACW 2 cut(s) 1497, 2328
TauI GCSGC 1 cut(s) 1150
TfiI GAWTC 8 cut(s) 500, 971, 1205, 1220, 1259, 1349, 1778, 1944
TscAI CASTG 4 cut(s) 235, 521, 586, 740
TseI GCWGC 7 cut(s) 143, 188, 1172, 1681, 1709, 1771, 2057
TspGWI ACGGA 4 cut(s) 459, 557, 1317, 1865
TspRI CASTG 4 cut(s) 235, 521, 586, 740
VneI GTGCAC 1 cut(s) 808
VpaK11BI GGWCC 1 cut(s) 865
XagI CCTNNNNNAGG 1 cut(s) 1059
XapI RAATTY 6 cut(s) 280, 638, 952, 1289, 1439, 1569
XceI RCATGY 1 cut(s) 414
XhoI CTCGAG 1 cut(s) 12
XmiI GTMKAC 1 cut(s) 544
XmnI GAANNNNTTC 3 cut(s) 334, 1440, 2195
XspI CTAG 1 cut(s) 1566
Zsp2I ATGCAT 1 cut(s) 2282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.