pycom14g18420

pre-rRNA-processing protein TSR1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0010916
Physical Location & Seq
Forward (+)
20087507 .. 20090294
2788 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g18420.8

Sequence Viewer

Length: 1290 bp
ATGGCTGAGGCTGAAGAAAGTCAGAAGCAAAAAAAGAAGAAAAAGAGGGCTCTTCCTCGAGGCACTTCAGAATACCAGGCTGCTTGGATTGTGGATGATACAGATGAAGAGGAGTCAAGTACTGATGATGAAGCTGATGGTATGGTATTGGATGAGAGGGACAGTGGTTATCCTGGTCAAGATGACAATAATTATTCAGATGAGAGTGAGGATCAAGCTTCAATAAGGGACGCTGATGGAGAAACTGATATTGATTCGGTGATGATGGAAGGTGAAAACCTGACTAAGGAACAGTTGGAGAATGAGATCCGAAAAATAAAACAAGCACATGCTGATGATGAGGAATTCCCGGATGAAGTGGATACACCATTAGACATTCCAGCAAGAAAACGTTTTGCTAAATATAGGGGCCTGAAGTCCTTCAGGACCTCTTCATGGGATCCCAAAGAGTCTTTGCCTGCAGAGTATGCCAGAATCTTTGCATTCGATAATTTCAACAGAACACAGAAAAATGTCCTTGCTAAAGCGTTAGCAATGGACCAAGAAAACAGTGATGAGTGTGCCACAGCTAGCTCATATGCAAGGCTGTATATTAGTGAAGTGCCAACTAGTGTCGCTTCTAAATTATGTATGCATGCAAAGACAATTCCTGTCATAGCATGTGGTCTTTTGCAGCATGAGTCCAAGATGTCTGTACTTCATTTCAGCATAAAGAAGCACGACACGTACAGTGCTCCTATCAAATCCAAGGACGAATTAATATTTCATGTTGGCTTTCGCCAATTCATTGCCAGGCCAATATATTCTACTGACAACATGAACTCAGACAAGCATAAGATGGAGAGATTTCTACATCCAGGACGTTTTTCCATGGCTTCGATTTATGCCCCAATCTCTTTTCCTCCACTTCCCTTGATAGCTTTGAAGAGTTCTGAAGGGATGCCCACTCCACCTACTGTAGCTGCTGTTGGTGCACTGAAATGCATTGACCCTGACCGAATTATACTAAAGAAGATTACTTTAACCGGTTACCCTCAACGAGTATCAAAACTGAAAGCTTCTGTAAGATATATGTTCCATAACCCAGAGGACGTTAAATGGTTCAAGCCTGTTGAAGTATGGACCAAATGTGGTCGTCGTGGTCGCATCAAGGAGCCTCTTGGTACACACGGGGCATTGAAATGCATCTTCAATGGGGTCCTCCAGCAGAGTGACACCGTATGCATGAGTCTGTACAAGCGTGCGTATCCCAAGTGGCCGGAACACCGCTTCCCAATTCTCGATGCTTGA

Protein Analysis

430

Amino Acids

48.66

Weight (kDa)

6.06

Isoelectric Point (pI)

42.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010916)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42440
fragaria_vesca FvH4_5g12620 FvH4_5g12620 FvH4_5g12620
malus_domestica MD06G1211900.v1.1 MD14G1222500.v1.1
prunus_persica Prupe.5G218100_v2.0.a1
pyrus_communis pycom14g18410 pycom14g18420
rosa_chinensis RchiOBHm_Chr7g0184701
rosa_laevigata RLG00000004958
rosa_multiflora Rmu_ssc0000289.1_g000022
rosa_roxburghii Rroxscaffold_3G00269420
rosa_rugosa Rorug06G0464600 Rorug06G0464600
rosa_samantha Rh7AG078400 Rh7BG068900 Rh7CG069700 Rh7DG069100
rosa_wichuraiana Rw7G005700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 57
AciI CCGC 1 cut(s) 1267
AclI AACGTT 1 cut(s) 391
AclWI GGATC 4 cut(s) 219, 301, 434, 447
AcoI YGGCCR 1 cut(s) 1256
AcsI RAATTY 1 cut(s) 344
AcuI CTGAAG 5 cut(s) 33, 51, 406, 434, 954
AfaI GTAC 5 cut(s) 121, 696, 728, 1165, 1235
AfiI CCNNNNNNNGG 2 cut(s) 286, 435
AflIII ACRYGT 1 cut(s) 723
AgeI ACCGGT 1 cut(s) 1025
AgsI TTSAA 7 cut(s) 222, 496, 925, 1105, 1115, 1180, 1192
AhlI ACTAGT 1 cut(s) 608
AjnI CCWGG 4 cut(s) 75, 172, 791, 856
AloI GAACNNNNNNTCC 2 cut(s) 1254, 1286
AluBI AGCT 7 cut(s) 134, 218, 569, 573, 920, 962, 1058
AluI AGCT 7 cut(s) 134, 218, 569, 573, 920, 962, 1058
Alw21I GWGCWC 2 cut(s) 736, 976
Alw44I GTGCAC 1 cut(s) 972
AlwI GGATC 4 cut(s) 219, 301, 434, 447
Ama87I CYCGRG 1 cut(s) 57
AoxI GGCC 3 cut(s) 409, 794, 1256
ApaLI GTGCAC 1 cut(s) 972
ApeKI GCWGC 3 cut(s) 80, 673, 962
ApoI RAATTY 1 cut(s) 344
AseI ATTAAT 1 cut(s) 758
AsiGI ACCGGT 1 cut(s) 1025
Asp700I GAANNNNTTC 1 cut(s) 419
AspS9I GGNCC 5 cut(s) 409, 426, 538, 1122, 1198
AsuC2I CCSGG 1 cut(s) 350
AsuHPI GGTGA 2 cut(s) 271, 284
AsuNHI GCTAGC 1 cut(s) 569
AvaI CYCGRG 1 cut(s) 57
AvaII GGWCC 4 cut(s) 426, 538, 1122, 1198
BaeGI GKGCMC 1 cut(s) 976
BamHI GGATCC 1 cut(s) 439
BanII GRGCYC 1 cut(s) 52
Bbv12I GWGCWC 2 cut(s) 736, 976
BbvCI CCTCAGC 1 cut(s) 6
BbvI GCAGC 3 cut(s) 67, 685, 949
BccI CCATC 4 cut(s) 131, 230, 259, 832
BciT130I CCWGG 4 cut(s) 77, 174, 793, 858
BciVI GTATCC 2 cut(s) 355, 1257
BcnI CCSGG 1 cut(s) 350
BcuI ACTAGT 1 cut(s) 608
BfaI CTAG 2 cut(s) 570, 609
BfmI CTRYAG 2 cut(s) 459, 957
BfuI GTATCC 2 cut(s) 355, 1257
BisI GCNGC 3 cut(s) 81, 674, 963
BlsI GCNGC 3 cut(s) 82, 675, 964
BmcAI AGTACT 1 cut(s) 121
Bme1390I CCNGG 5 cut(s) 77, 174, 350, 793, 858
Bme18I GGWCC 4 cut(s) 426, 538, 1122, 1198
BmeT110I CYCGRG 1 cut(s) 57
BmgT120I GGNCC 5 cut(s) 409, 426, 538, 1122, 1198
BmiI GGNNCC 4 cut(s) 410, 441, 1155, 1199
BmrFI CCNGG 5 cut(s) 77, 174, 350, 793, 858
BmsI GCATC 4 cut(s) 930, 1155, 1194, 1273
BmtI GCTAGC 1 cut(s) 573
BpmI CTGGAG 1 cut(s) 1187
Bpu10I CCTNAGC 1 cut(s) 6
BpuMI CCSGG 1 cut(s) 350
BsaAI YACGTR 1 cut(s) 726
BsaJI CCNNGG 2 cut(s) 747, 870
BsaWI WCCGGW 1 cut(s) 1025
Bsc4I CCNNNNNNNGG 2 cut(s) 286, 435
Bse118I RCCGGY 1 cut(s) 1025
Bse3DI GCAATG 2 cut(s) 540, 786
BseBI CCWGG 4 cut(s) 77, 174, 793, 858
BseDI CCNNGG 2 cut(s) 747, 870
BseGI GGATG 5 cut(s) 100, 157, 358, 853, 945
BseLI CCNNNNNNNGG 2 cut(s) 286, 435
BseMI GCAATG 2 cut(s) 540, 786
BseMII CTCAG 1 cut(s) 837
BseRI GAGGAG 1 cut(s) 125
BseSI GKGCMC 1 cut(s) 976
BseXI GCAGC 3 cut(s) 67, 685, 949
BshFI GGCC 3 cut(s) 411, 796, 1258
BshTI ACCGGT 1 cut(s) 1025
BsiHKAI GWGCWC 2 cut(s) 736, 976
BsiHKCI CYCGRG 1 cut(s) 57
BsiSI CCGG 3 cut(s) 350, 1026, 1259
BslFI GGGAC 2 cut(s) 173, 242
BslI CCNNNNNNNGG 2 cut(s) 286, 435
BsmFI GGGAC 2 cut(s) 173, 242
BsmI GAATGC 1 cut(s) 482
BsnI GGCC 3 cut(s) 411, 796, 1258
BsoBI CYCGRG 1 cut(s) 57
Bsp1286I GDGCHC 3 cut(s) 52, 736, 976
Bsp1407I TGTACA 1 cut(s) 1233
Bsp143I GATC 3 cut(s) 211, 306, 439
Bsp19I CCATGG 1 cut(s) 870
BspACI CCGC 1 cut(s) 1267
BspANI GGCC 3 cut(s) 411, 796, 1258
BspCNI CTCAG 1 cut(s) 836
BspLI GGNNCC 4 cut(s) 410, 441, 1155, 1199
BspMAI CTGCAG 1 cut(s) 463
BspOI GCTAGC 1 cut(s) 573
BspPI GGATC 4 cut(s) 219, 301, 434, 447
BspQI GCTCTTC 1 cut(s) 57
BsrDI GCAATG 2 cut(s) 540, 786
BsrFI RCCGGY 1 cut(s) 1025
BsrGI TGTACA 1 cut(s) 1233
BssAI RCCGGY 1 cut(s) 1025
BssECI CCNNGG 2 cut(s) 747, 870
BssMI GATC 3 cut(s) 211, 306, 439
BssT1I CCWWGG 2 cut(s) 747, 870
Bst2UI CCWGG 4 cut(s) 77, 174, 793, 858
Bst4CI ACNGT 6 cut(s) 164, 294, 551, 731, 958, 1219
Bst6I CTCTTC 4 cut(s) 57, 102, 436, 920
BstAPI GCANNNNNTGC 1 cut(s) 467
BstAUI TGTACA 1 cut(s) 1233
BstBAI YACGTR 1 cut(s) 726
BstC8I GCNNGC 4 cut(s) 459, 571, 636, 1242
BstDEI CTNAG 3 cut(s) 6, 285, 823
BstDSI CCRYGG 1 cut(s) 870
BstEII GGTNACC 1 cut(s) 1028
BstENI CCTNNNNNAGG 1 cut(s) 284
BstF5I GGATG 5 cut(s) 100, 157, 358, 853, 945
BstKTI GATC 3 cut(s) 214, 309, 442
BstMBI GATC 3 cut(s) 211, 306, 439
BstMWI GCNNNNNNNGC 2 cut(s) 467, 971
BstNI CCWGG 4 cut(s) 77, 174, 793, 858
BstNSI RCATGY 3 cut(s) 332, 638, 663
BstPI GGTNACC 1 cut(s) 1028
BstSCI CCNGG 5 cut(s) 75, 172, 348, 791, 856
BstSFI CTRYAG 2 cut(s) 459, 957
BstSLI GKGCMC 1 cut(s) 976
BstV1I GCAGC 3 cut(s) 67, 685, 949
BstX2I RGATCY 2 cut(s) 306, 439
BstYI RGATCY 2 cut(s) 306, 439
BsuI GTATCC 2 cut(s) 355, 1257
BsuRI GGCC 3 cut(s) 411, 796, 1258
BtgI CCRYGG 1 cut(s) 870
BtsCI GGATG 5 cut(s) 100, 157, 358, 853, 945
BtsIMutI CAGTG 4 cut(s) 169, 556, 736, 974
Cac8I GCNNGC 4 cut(s) 459, 571, 636, 1242
Cfr10I RCCGGY 1 cut(s) 1025
Cfr13I GGNCC 5 cut(s) 409, 426, 538, 1122, 1198
CseI GACGC 1 cut(s) 239
Csp6I GTAC 5 cut(s) 120, 695, 727, 1164, 1234
CspAI ACCGGT 1 cut(s) 1025
CspCI CAANNNNNGTGG 2 cut(s) 894, 929
CviAII CATG 9 cut(s) 329, 435, 635, 660, 677, 767, 817, 871, 1225
CviQI GTAC 5 cut(s) 120, 695, 727, 1164, 1234
DdeI CTNAG 3 cut(s) 6, 285, 823
DpnI GATC 3 cut(s) 213, 308, 441
DpnII GATC 3 cut(s) 211, 306, 439
EaeI YGGCCR 1 cut(s) 1256
Eam1104I CTCTTC 4 cut(s) 57, 102, 436, 920
EarI CTCTTC 4 cut(s) 57, 102, 436, 920
Eco130I CCWWGG 2 cut(s) 747, 870
Eco24I GRGCYC 1 cut(s) 52
Eco47I GGWCC 4 cut(s) 426, 538, 1122, 1198
Eco57I CTGAAG 5 cut(s) 33, 51, 406, 434, 954
Eco88I CYCGRG 1 cut(s) 57
Eco91I GGTNACC 1 cut(s) 1028
EcoNI CCTNNNNNAGG 1 cut(s) 284
EcoO109I RGGNCCY 3 cut(s) 409, 426, 1198
EcoO65I GGTNACC 1 cut(s) 1028
EcoRI GAATTC 1 cut(s) 344
EcoRII CCWGG 4 cut(s) 75, 172, 791, 856
EcoT14I CCWWGG 2 cut(s) 747, 870
EcoT22I ATGCAT 4 cut(s) 636, 986, 1187, 1226
EcoT38I GRGCYC 1 cut(s) 52
ErhI CCWWGG 2 cut(s) 747, 870
FaeI CATG 9 cut(s) 332, 438, 638, 663, 680, 770, 820, 874, 1228
FaqI GGGAC 2 cut(s) 173, 242
FatI CATG 9 cut(s) 328, 434, 634, 659, 676, 766, 816, 870, 1224
FauNDI CATATG 1 cut(s) 577
Fnu4HI GCNGC 3 cut(s) 81, 674, 963
FokI GGATG 5 cut(s) 107, 164, 365, 840, 952
FriOI GRGCYC 1 cut(s) 52
Fsp4HI GCNGC 3 cut(s) 81, 674, 963
FspBI CTAG 2 cut(s) 570, 609
GluI GCNGC 3 cut(s) 81, 674, 963
GsuI CTGGAG 1 cut(s) 1187
HaeIII GGCC 3 cut(s) 411, 796, 1258
HapII CCGG 3 cut(s) 350, 1026, 1259
HgaI GACGC 1 cut(s) 239
Hin1II CATG 9 cut(s) 332, 438, 638, 663, 680, 770, 820, 874, 1228
HindIII AAGCTT 2 cut(s) 216, 1056
HinfI GANTC 6 cut(s) 113, 254, 449, 474, 680, 1228
HpaII CCGG 3 cut(s) 350, 1026, 1259
HphI GGTGA 2 cut(s) 271, 284
Hpy166II GTNNAC 2 cut(s) 974, 1166
Hpy188I TCNGA 6 cut(s) 24, 70, 199, 311, 826, 934
Hpy188III TCNNGA 3 cut(s) 179, 424, 1280
Hpy8I GTNNAC 2 cut(s) 974, 1166
Hpy99I CGWCG 1 cut(s) 1140
HpyAV CCTTC 3 cut(s) 263, 430, 929
HpyCH4III ACNGT 6 cut(s) 164, 294, 551, 731, 958, 1219
HpyCH4IV ACGT 4 cut(s) 391, 725, 862, 1092
HpyF10VI GCNNNNNNNGC 2 cut(s) 467, 971
HpyF3I CTNAG 3 cut(s) 6, 285, 823
HpySE526I ACGT 4 cut(s) 391, 725, 862, 1092
Hsp92II CATG 9 cut(s) 332, 438, 638, 663, 680, 770, 820, 874, 1228
Kzo9I GATC 3 cut(s) 211, 306, 439
LguI GCTCTTC 1 cut(s) 57
LmnI GCTCC 2 cut(s) 739, 1153
Lsp1109I GCAGC 3 cut(s) 67, 685, 949
LweI GCATC 4 cut(s) 930, 1155, 1194, 1273
MaeI CTAG 2 cut(s) 570, 609
MaeII ACGT 4 cut(s) 391, 725, 862, 1092
MaeIII GTNAC 2 cut(s) 1028, 1211
MalI GATC 3 cut(s) 213, 308, 441
MboI GATC 3 cut(s) 211, 306, 439
MboII GAAGA 8 cut(s) 26, 44, 49, 119, 423, 937, 1024, 1180
MflI RGATCY 2 cut(s) 306, 439
MhlI GDGCHC 3 cut(s) 52, 736, 976
MluCI AATT 9 cut(s) 190, 344, 490, 623, 645, 755, 782, 999, 1275
MlyI GAGTC 4 cut(s) 122, 458, 689, 1237
MmeI TCCRAC 1 cut(s) 276
Mph1103I ATGCAT 4 cut(s) 636, 986, 1187, 1226
MroXI GAANNNNTTC 1 cut(s) 419
MseI TTAA 3 cut(s) 758, 1022, 1095
MslI CAYNNNNRTG 3 cut(s) 333, 979, 1180
MspI CCGG 3 cut(s) 350, 1026, 1259
MspR9I CCNGG 5 cut(s) 77, 174, 350, 793, 858
Mva1269I GAATGC 1 cut(s) 482
MvaI CCWGG 4 cut(s) 77, 174, 793, 858
MwoI GCNNNNNNNGC 2 cut(s) 467, 971
NciI CCSGG 1 cut(s) 350
NcoI CCATGG 1 cut(s) 870
NdeI CATATG 1 cut(s) 577
NdeII GATC 3 cut(s) 211, 306, 439
NheI GCTAGC 1 cut(s) 569
NlaIII CATG 9 cut(s) 332, 438, 638, 663, 680, 770, 820, 874, 1228
NlaIV GGNNCC 4 cut(s) 410, 441, 1155, 1199
NmuCI GTSAC 1 cut(s) 1211
NsiI ATGCAT 4 cut(s) 636, 986, 1187, 1226
NspI RCATGY 3 cut(s) 332, 638, 663
PaeI GCATGC 1 cut(s) 638
PaeR7I CTCGAG 1 cut(s) 57
PciSI GCTCTTC 1 cut(s) 57
PctI GAATGC 1 cut(s) 482
PdmI GAANNNNTTC 1 cut(s) 419
PfeI GAWTC 2 cut(s) 254, 474
PfoI TCCNGGA 2 cut(s) 348, 856
PinAI ACCGGT 1 cut(s) 1025
PkrI GCNGC 3 cut(s) 82, 675, 964
PleI GAGTC 4 cut(s) 121, 457, 688, 1236
PpsI GAGTC 4 cut(s) 121, 457, 688, 1236
Ppu21I YACGTR 1 cut(s) 726
PpuMI RGGWCCY 2 cut(s) 426, 1198
PshBI ATTAAT 1 cut(s) 758
Psp1406I AACGTT 1 cut(s) 391
Psp5II RGGWCCY 2 cut(s) 426, 1198
Psp6I CCWGG 4 cut(s) 75, 172, 791, 856
PspEI GGTNACC 1 cut(s) 1028
PspGI CCWGG 4 cut(s) 75, 172, 791, 856
PspN4I GGNNCC 4 cut(s) 410, 441, 1155, 1199
PspPI GGNCC 5 cut(s) 409, 426, 538, 1122, 1198
PspPPI RGGWCCY 2 cut(s) 426, 1198
PspXI VCTCGAGB 1 cut(s) 57
PstI CTGCAG 1 cut(s) 463
PsuI RGATCY 2 cut(s) 306, 439
RsaI GTAC 5 cut(s) 121, 696, 728, 1165, 1235
RsaNI GTAC 5 cut(s) 120, 695, 727, 1164, 1234
RseI CAYNNNNRTG 3 cut(s) 333, 979, 1180
SapI GCTCTTC 1 cut(s) 57
SaqAI TTAA 3 cut(s) 758, 1022, 1095
SatI GCNGC 3 cut(s) 81, 674, 963
Sau3AI GATC 3 cut(s) 211, 306, 439
Sau96I GGNCC 5 cut(s) 409, 426, 538, 1122, 1198
ScaI AGTACT 1 cut(s) 121
SchI GAGTC 4 cut(s) 122, 458, 689, 1237
ScrFI CCNGG 5 cut(s) 77, 174, 350, 793, 858
SduI GDGCHC 3 cut(s) 52, 736, 976
SfaNI GCATC 4 cut(s) 930, 1155, 1194, 1273
SfcI CTRYAG 2 cut(s) 459, 957
Sfr274I CTCGAG 1 cut(s) 57
SinI GGWCC 4 cut(s) 426, 538, 1122, 1198
SlaI CTCGAG 1 cut(s) 57
SmiMI CAYNNNNRTG 3 cut(s) 333, 979, 1180
SmlI CTYRAG 1 cut(s) 57
SmoI CTYRAG 1 cut(s) 57
SpeI ACTAGT 1 cut(s) 608
SphI GCATGC 1 cut(s) 638
Sse9I AATT 9 cut(s) 190, 344, 490, 623, 645, 755, 782, 999, 1275
SsiI CCGC 1 cut(s) 1267
SspI AATATT 1 cut(s) 762
SspMI CTAG 2 cut(s) 570, 609
StyD4I CCNGG 5 cut(s) 75, 172, 348, 791, 856
StyI CCWWGG 2 cut(s) 747, 870
TaaI ACNGT 6 cut(s) 164, 294, 551, 731, 958, 1219
TaiI ACGT 4 cut(s) 394, 728, 865, 1095
TaqI TCGA 4 cut(s) 58, 486, 878, 1281
TaqII GACCGA 1 cut(s) 1011
TasI AATT 9 cut(s) 190, 344, 490, 623, 645, 755, 782, 999, 1275
TatI WGTACW 3 cut(s) 119, 694, 1233
TfiI GAWTC 2 cut(s) 254, 474
Tru1I TTAA 3 cut(s) 758, 1022, 1095
Tru9I TTAA 3 cut(s) 758, 1022, 1095
TscAI CASTG 4 cut(s) 169, 556, 736, 981
TseFI GTSAC 1 cut(s) 1211
TseI GCWGC 3 cut(s) 80, 673, 962
Tsp45I GTSAC 1 cut(s) 1211
TspDTI ATGAA 8 cut(s) 120, 144, 369, 423, 689, 755, 775, 833
TspRI CASTG 4 cut(s) 169, 556, 736, 981
VneI GTGCAC 1 cut(s) 972
VpaK11BI GGWCC 4 cut(s) 426, 538, 1122, 1198
VspI ATTAAT 1 cut(s) 758
XagI CCTNNNNNAGG 1 cut(s) 284
XapI RAATTY 1 cut(s) 344
XceI RCATGY 3 cut(s) 332, 638, 663
XhoI CTCGAG 1 cut(s) 57
XmnI GAANNNNTTC 1 cut(s) 419
XspI CTAG 2 cut(s) 570, 609
ZrmI AGTACT 1 cut(s) 121
Zsp2I ATGCAT 4 cut(s) 636, 986, 1187, 1226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.