Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0010916

Physical Location & Seq

Genomic Coordinates Forward (+)

30406316 .. 30412580

Gene Structure 6265 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1222500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2376 bp

ATGGGAGGCTCGCGAGCTCAAGTGAATAAGCAGCACAAGACGCGCTTCGCCTCCAAATCTTCTCGCAATCTCCACAAAACTTCAGAGAAGAGTAGGATCGGTAAACCGGAGCGCAATGTCACTAAGGGGGCTCGGGCTGCTCGCGTTCAGCGGAGCAAGATGCTTCGGGAGCAGAAGAGGGCGGCTGTTTTGAAAGAGAAGAGGGCTTCGAGTGGATCAGCAAGTCCTCCCCGTGTGATTGTTTTGTTCGGACTTTCTGCTGATGCGAACCTGAATTCACTTGCTGGGGATCTTTTATCGTTGCTATCTCCACAAGGTTATGAAGCCGCATTTCCAACGGTTGCTTCTCCTGAGTACAAGCTCAGAACAACGGTATTGAAAGCACCTCATGGCGATCTTCCAACATGTATGGAAATGGCTAAGGTTGCTGATCTCATTGCTTTTGTGGCATCAGCGAGCTCTTCACATGAAGGAAGCACGTCTGACTACATTGACTCTTTTGGAAGTCAATGTCTTTCTGTTTTTAGGTCCCTTGGTTTACCAAGCACTGTGGTGCTAATTCGTGATCTACCTGCTGATGTGAAAAGAAGACATGATTCTAAGAAAATATGTATGTCTAGTCTTGCTTCGGAATTTCCTGAGGATTGTAAATATTATCCAGCTGATACAAAGGATGATTTGCACAAGTTCATGTGGCTCTTTAAGGAACAAAGGCTTTCAATTCCTCACTGGCGAAGTCAACGGCCTTACGTGATGGCCCAGAAGGTTGATATGGTAGCAGATGATTCCAGTTTGGGAAAGTGCACCCTTCTTCTTACTGGATATATACGTGCTCGCAGTCTTCCTGTGAACCAACTGGTTCATGTTTCTGGCACGGGGGATTTCCAGCTGTCCAAAATGGAAATTCTCAAGGACCCATTTCCTTTGAATGCAAGAAAAGAGCAAGATGCCATGGACTCAGATGAAGTGGGTGATAGAGAGGTCCTTCGTTCTTTGGTTCCCGATCCTATGAAGCAGGAGGCTTTACTAGTTGAGAATGTTCCTGATCCCCTTGCTGGTGAACAGACATGGCCAACAGAAGCAGAAATGGCTGAGGCTGAAGAAAGTCAGAAGCAAAAGAAGAAGAAAAAGAGGGCTCTTCCTCGAGGCACTTCAGAATACCAGGCTGCTTGGATTGTGGATGATACAGATGAAGAGGAGTCAAGTACTGATGATGAAGCTGATGGTATGGTATTGGATGAGAGGGACGGTGGTTATCCTGGTCAAGATGACAATAATTATTCAGATGAGAGTGACGATCAAGCTTCAATAAGGGACGCTGATGGAGAAACTGATATTGATTCAGTGATGATGGAAGGTGAAAACCTGACTAAGGAACAGTTGGAGAATGAGATCCGAAAAATAAAGCAAGCACATGCTGATGACGAGGAATTTCCGGATGAAGTCGATACACCATTAGATATTCCAGCAAGAAAACGTTTTGCTAAATATAGGGGCCTGAAGTCCTTCAGGACCTCTTCATGGGATCCCAAAGAGTCTCTGCCTGCAGAGTATGCCAGAATCTTTGCATTCGATAATTTCAACAAAACACAGAAAAATGTCCTTGCTAAAGCGTTAGAAATGGACCAAGAAAACAGTGACGAGTGTGCCACAGCTAGCTCATATGCAAGGCTGTATATTAGTGAAGTGCCAACTAGCGTCGCTTCTAAATTATGTATGCGTGCAAAGACAATTCCTGTCATAGCATGTGGTCTTTTGCAGCATGAGTCCAAGATGTCTGTACTTCATTTCAGCATAAAGAAGCACGACACGTACAGTGCTCCTATCAAATCTAAGGACGAATTAATATTTCATGTTGGCTTTCGCCAATTCATTGCCAGGCCAATATATTCTACTGACAACATGAACTCAGACAAGCATAAGATGGAGAGGTTTCTACATCCAGGACGTTTTTCCATGGCTTCGATTTATGCCCCAATCTCTTTTCCTCCACTTCCTTTGATAGCTTTGAAGAGTTCTGAAGGGGTGGCCGCTGCACTTACCATAGCTGCTGTTGGTGCACTGAAATGCATTGACCCTGACCGAATTATACTAAAGAAGATTACTTTAACCGGTTACCCTCAACGAGTATCAAAACTGAAGGCTTCTGTAAGATACATGTTCCATAACCCAGAGGACGTTAAATGGTTCAAGCCTGTTGAAGTATGGACCAAATGTGGTCGTCGTGGTCGCATCAAGGAGCCTCTTGGTACACATGGGGCACTGAAGTGCATCTTCAACGGGGTCCTCCAGCAGAGTGACACCGTATGCATGAGTCTGTACAAGCGTGCGTATCCCAAGTGGCCGGAACACCGCTTCCCAATCCTCGATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AARP2CN RIBIOP_C

Protein Analysis

792

Amino Acids

88.6

Weight (kDa)

7.85

Isoelectric Point (pI)

46.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AARP2CN	PF08142	242 - 306	2.4e-21	AARP2CN (NUC121) domain
RIBIOP_C	PF04950	482 - 779	1.2e-112	40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010916)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42440
fragaria_vesca	FvH4_5g12620 FvH4_5g12620 FvH4_5g12620
malus_domestica	MD06G1211900.v1.1 MD14G1222500.v1.1
prunus_persica	Prupe.5G218100_v2.0.a1
pyrus_communis	pycom14g18410 pycom14g18420
rosa_chinensis	RchiOBHm_Chr7g0184701
rosa_laevigata	RLG00000004958
rosa_multiflora	Rmu_ssc0000289.1_g000022
rosa_roxburghii	Rroxscaffold_3G00269420
rosa_rugosa	Rorug06G0464600 Rorug06G0464600
rosa_samantha	Rh7AG078400 Rh7BG068900 Rh7CG069700 Rh7DG069100
rosa_wichuraiana	Rw7G005700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	1143
Acc36I	ACCTGC	1 cut(s)	580
AccII	CGCG	3 cut(s)	13, 43, 144
AccIII	TCCGGA	1 cut(s)	1435
AciI	CCGC	5 cut(s)	151, 182, 327, 2031, 2353
AclI	AACGTT	1 cut(s)	1477
AclWI	GGATC	8 cut(s)	104, 223, 297, 998, 1040, 1387, 1520, 1533
AcoI	YGGCCR	3 cut(s)	1070, 2028, 2342
AcsI	RAATTY	4 cut(s)	274, 632, 903, 1430
AcuI	CTGAAG	8 cut(s)	66, 1119, 1137, 1492, 1520, 2040, 2159, 2285
AfaI	GTAC	6 cut(s)	356, 1207, 1782, 1814, 2251, 2321
AfiI	CCNNNNNNNGG	3 cut(s)	1055, 1372, 1521
AflIII	ACRYGT	3 cut(s)	404, 1809, 2157
AgeI	ACCGGT	1 cut(s)	2111
AhlI	ACTAGT	1 cut(s)	1027
AjiI	CACGTC	1 cut(s)	480
AjnI	CCWGG	4 cut(s)	1161, 1258, 1877, 1942
AjuI	GAANNNNNNNTTGG	2 cut(s)	328, 360
AleI	CACNNNNGTG	2 cut(s)	551, 2266
AloI	GAACNNNNNNTCC	2 cut(s)	2340, 2372
Alw21I	GWGCWC	6 cut(s)	19, 461, 806, 835, 1822, 2062
Alw26I	GTCTC	1 cut(s)	1542
Alw44I	GTGCAC	2 cut(s)	802, 2058
AlwI	GGATC	8 cut(s)	104, 223, 297, 998, 1040, 1387, 1520, 1533
Ama87I	CYCGRG	2 cut(s)	132, 1143
Aor13HI	TCCGGA	1 cut(s)	1435
AoxI	GGCC	7 cut(s)	743, 756, 1070, 1495, 1880, 2028, 2342
ApaLI	GTGCAC	2 cut(s)	802, 2058
ApeKI	GCWGC	6 cut(s)	31, 137, 1166, 1759, 2033, 2048
ApoI	RAATTY	4 cut(s)	274, 632, 903, 1430
AseI	ATTAAT	1 cut(s)	1844
AsiGI	ACCGGT	1 cut(s)	2111
Asp700I	GAANNNNTTC	1 cut(s)	1505
AspLEI	GCGC	2 cut(s)	45, 114
AspS9I	GGNCC	9 cut(s)	528, 757, 913, 982, 1495, 1512, 1624, 2208, 2284
AsuHPI	GGTGA	3 cut(s)	983, 1070, 1370
AsuNHI	GCTAGC	1 cut(s)	1655
AvaI	CYCGRG	2 cut(s)	132, 1143
AvaII	GGWCC	7 cut(s)	528, 913, 982, 1512, 1624, 2208, 2284
AxyI	CCTNAGG	1 cut(s)	639
BaeGI	GKGCMC	3 cut(s)	806, 2062, 2263
BalI	TGGCCA	1 cut(s)	1072
BamHI	GGATCC	1 cut(s)	1525
BanII	GRGCYC	4 cut(s)	19, 133, 461, 1138
BbsI	GAAGAC	2 cut(s)	595, 833
Bbv12I	GWGCWC	6 cut(s)	19, 461, 806, 835, 1822, 2062
BbvCI	CCTCAGC	1 cut(s)	1092
BbvI	GCAGC	6 cut(s)	43, 124, 1153, 1771, 2020, 2035
BccI	CCATC	5 cut(s)	748, 1217, 1316, 1345, 1918
BceAI	ACGGC	1 cut(s)	758
BciT130I	CCWGG	4 cut(s)	1163, 1260, 1879, 1944
BciVI	GTATCC	1 cut(s)	2343
BcoDI	GTCTC	1 cut(s)	1542
BcuI	ACTAGT	1 cut(s)	1027
BfaI	CTAG	4 cut(s)	618, 1028, 1656, 1695
BfmI	CTRYAG	1 cut(s)	1545
BfuAI	ACCTGC	1 cut(s)	580
BfuI	GTATCC	1 cut(s)	2343
BisI	GCNGC	9 cut(s)	32, 138, 183, 327, 1167, 1760, 2031, 2034, 2049
BlsI	GCNGC	9 cut(s)	33, 139, 184, 328, 1168, 1761, 2032, 2035, 2050
BmcAI	AGTACT	1 cut(s)	1207
Bme1390I	CCNGG	4 cut(s)	1163, 1260, 1879, 1944
Bme18I	GGWCC	7 cut(s)	528, 913, 982, 1512, 1624, 2208, 2284
BmeT110I	CYCGRG	2 cut(s)	132, 1143
BmgBI	CACGTC	1 cut(s)	480
BmgT120I	GGNCC	9 cut(s)	528, 757, 913, 982, 1495, 1512, 1624, 2208, 2284
BmiI	GGNNCC	7 cut(s)	530, 915, 999, 1496, 1527, 2241, 2285
BmrFI	CCNGG	4 cut(s)	1163, 1260, 1879, 1944
BmsI	GCATC	7 cut(s)	150, 253, 458, 937, 2241, 2280, 2359
BmtI	GCTAGC	1 cut(s)	1659
BpiI	GAAGAC	2 cut(s)	595, 833
BpmI	CTGGAG	1 cut(s)	2273
Bpu10I	CCTNAGC	2 cut(s)	420, 1092
BpuEI	CTTGAG	1 cut(s)	893
BsaAI	YACGTR	3 cut(s)	751, 830, 1812
BsaJI	CCNNGG	3 cut(s)	532, 951, 1956
BsaWI	WCCGGW	3 cut(s)	106, 1435, 2111
Bsc4I	CCNNNNNNNGG	3 cut(s)	1055, 1372, 1521
Bse118I	RCCGGY	1 cut(s)	2111
Bse1I	ACTGG	4 cut(s)	734, 789, 823, 861
Bse21I	CCTNAGG	1 cut(s)	639
Bse3DI	GCAATG	3 cut(s)	121, 435, 1872
BseAI	TCCGGA	1 cut(s)	1435
BseBI	CCWGG	4 cut(s)	1163, 1260, 1879, 1944
BseDI	CCNNGG	3 cut(s)	532, 951, 1956
BseGI	GGATG	5 cut(s)	679, 1186, 1243, 1444, 1939
BseLI	CCNNNNNNNGG	3 cut(s)	1055, 1372, 1521
BseMI	GCAATG	3 cut(s)	121, 435, 1872
BseMII	CTCAG	6 cut(s)	342, 376, 630, 972, 1083, 1923
BseNI	ACTGG	4 cut(s)	734, 789, 823, 861
BseRI	GAGGAG	1 cut(s)	1211
BseSI	GKGCMC	3 cut(s)	806, 2062, 2263
BseXI	GCAGC	6 cut(s)	43, 124, 1153, 1771, 2020, 2035
BseYI	CCCAGC	1 cut(s)	284
BsgI	GTGCAG	1 cut(s)	2019
Bsh1236I	CGCG	3 cut(s)	13, 43, 144
BshFI	GGCC	7 cut(s)	745, 758, 1072, 1497, 1882, 2030, 2344
BshTI	ACCGGT	1 cut(s)	2111
BsiHKAI	GWGCWC	6 cut(s)	19, 461, 806, 835, 1822, 2062
BsiHKCI	CYCGRG	2 cut(s)	132, 1143
BsiSI	CCGG	4 cut(s)	107, 1436, 2112, 2345
BslFI	GGGAC	3 cut(s)	514, 1259, 1328
BslI	CCNNNNNNNGG	3 cut(s)	1055, 1372, 1521
BsmAI	GTCTC	1 cut(s)	1542
BsmFI	GGGAC	3 cut(s)	514, 1259, 1328
BsmI	GAATGC	2 cut(s)	934, 1568
BsnI	GGCC	7 cut(s)	745, 758, 1072, 1497, 1882, 2030, 2344
BsoBI	CYCGRG	2 cut(s)	132, 1143
Bsp1286I	GDGCHC	9 cut(s)	19, 133, 461, 806, 835, 1138, 1822, 2062, 2263
Bsp13I	TCCGGA	1 cut(s)	1435
Bsp1407I	TGTACA	1 cut(s)	2319
Bsp19I	CCATGG	2 cut(s)	951, 1956
Bsp68I	TCGCGA	1 cut(s)	13
BspACI	CCGC	5 cut(s)	151, 182, 327, 2031, 2353
BspANI	GGCC	7 cut(s)	745, 758, 1072, 1497, 1882, 2030, 2344
BspCNI	CTCAG	6 cut(s)	343, 375, 631, 971, 1084, 1922
BspEI	TCCGGA	1 cut(s)	1435
BspFNI	CGCG	3 cut(s)	13, 43, 144
BspLI	GGNNCC	7 cut(s)	530, 915, 999, 1496, 1527, 2241, 2285
BspMAI	CTGCAG	1 cut(s)	1549
BspMI	ACCTGC	1 cut(s)	580
BspOI	GCTAGC	1 cut(s)	1659
BspPI	GGATC	8 cut(s)	104, 223, 297, 998, 1040, 1387, 1520, 1533
BspQI	GCTCTTC	2 cut(s)	466, 1143
BsrDI	GCAATG	3 cut(s)	121, 435, 1872
BsrFI	RCCGGY	1 cut(s)	2111
BsrGI	TGTACA	1 cut(s)	2319
BsrI	ACTGG	4 cut(s)	734, 789, 823, 861
BssAI	RCCGGY	1 cut(s)	2111
BssECI	CCNNGG	3 cut(s)	532, 951, 1956
BssT1I	CCWWGG	3 cut(s)	532, 951, 1956
Bst2UI	CCWGG	4 cut(s)	1163, 1260, 1879, 1944
Bst4CI	ACNGT	8 cut(s)	340, 373, 550, 1250, 1380, 1637, 1817, 2305
Bst6I	CTCTTC	8 cut(s)	83, 170, 194, 466, 1143, 1188, 1522, 2006
BstAPI	GCANNNNNTGC	1 cut(s)	1553
BstAUI	TGTACA	1 cut(s)	2319
BstBAI	YACGTR	3 cut(s)	751, 830, 1812
BstDSI	CCRYGG	2 cut(s)	951, 1956
BstEII	GGTNACC	1 cut(s)	2114
BstENI	CCTNNNNNAGG	1 cut(s)	1370
BstF5I	GGATG	5 cut(s)	679, 1186, 1243, 1444, 1939
BstFNI	CGCG	3 cut(s)	13, 43, 144
BstHHI	GCGC	2 cut(s)	45, 114
BstMAI	GTCTC	1 cut(s)	1542
BstMWI	GCNNNNNNNGC	8 cut(s)	40, 137, 169, 425, 446, 1088, 1553, 2057
BstNI	CCWGG	4 cut(s)	1163, 1260, 1879, 1944
BstNSI	RCATGY	4 cut(s)	408, 1418, 1749, 2161
BstPI	GGTNACC	1 cut(s)	2114
BstSCI	CCNGG	4 cut(s)	1161, 1258, 1877, 1942
BstSFI	CTRYAG	1 cut(s)	1545
BstSLI	GKGCMC	3 cut(s)	806, 2062, 2263
BstUI	CGCG	3 cut(s)	13, 43, 144
BstV1I	GCAGC	6 cut(s)	43, 124, 1153, 1771, 2020, 2035
BstV2I	GAAGAC	2 cut(s)	595, 833
BstX2I	RGATCY	3 cut(s)	289, 1392, 1525
BstYI	RGATCY	3 cut(s)	289, 1392, 1525
Bsu36I	CCTNAGG	1 cut(s)	639
BsuI	GTATCC	1 cut(s)	2343
BsuRI	GGCC	7 cut(s)	745, 758, 1072, 1497, 1882, 2030, 2344
BtgI	CCRYGG	2 cut(s)	951, 1956
BtrI	CACGTC	1 cut(s)	480
BtsCI	GGATG	5 cut(s)	679, 1186, 1243, 1444, 1939
BtsIMutI	CAGTG	7 cut(s)	546, 727, 1350, 1642, 1822, 2060, 2261
BtuMI	TCGCGA	1 cut(s)	13
BveI	ACCTGC	1 cut(s)	580
CfoI	GCGC	2 cut(s)	45, 114
Cfr10I	RCCGGY	1 cut(s)	2111
Cfr13I	GGNCC	9 cut(s)	528, 757, 913, 982, 1495, 1512, 1624, 2208, 2284
CseI	GACGC	3 cut(s)	49, 1325, 1687
Csp6I	GTAC	6 cut(s)	355, 1206, 1781, 1813, 2250, 2320
CspAI	ACCGGT	1 cut(s)	2111
CspCI	CAANNNNNGTGG	4 cut(s)	531, 566, 1980, 2015
CviQI	GTAC	6 cut(s)	355, 1206, 1781, 1813, 2250, 2320
EaeI	YGGCCR	3 cut(s)	1070, 2028, 2342
Eam1104I	CTCTTC	8 cut(s)	83, 170, 194, 466, 1143, 1188, 1522, 2006
EarI	CTCTTC	8 cut(s)	83, 170, 194, 466, 1143, 1188, 1522, 2006
Ecl136II	GAGCTC	2 cut(s)	17, 459
Eco130I	CCWWGG	3 cut(s)	532, 951, 1956
Eco24I	GRGCYC	4 cut(s)	19, 133, 461, 1138
Eco47I	GGWCC	7 cut(s)	528, 913, 982, 1512, 1624, 2208, 2284
Eco53kI	GAGCTC	2 cut(s)	17, 459
Eco57I	CTGAAG	8 cut(s)	66, 1119, 1137, 1492, 1520, 2040, 2159, 2285
Eco81I	CCTNAGG	1 cut(s)	639
Eco88I	CYCGRG	2 cut(s)	132, 1143
Eco91I	GGTNACC	1 cut(s)	2114
EcoICRI	GAGCTC	2 cut(s)	17, 459
EcoNI	CCTNNNNNAGG	1 cut(s)	1370
EcoO109I	RGGNCCY	6 cut(s)	528, 913, 982, 1495, 1512, 2284
EcoO65I	GGTNACC	1 cut(s)	2114
EcoRI	GAATTC	1 cut(s)	274
EcoRII	CCWGG	4 cut(s)	1161, 1258, 1877, 1942
EcoT14I	CCWWGG	3 cut(s)	532, 951, 1956
EcoT22I	ATGCAT	2 cut(s)	2072, 2312
EcoT38I	GRGCYC	4 cut(s)	19, 133, 461, 1138
ErhI	CCWWGG	3 cut(s)	532, 951, 1956
FalI	AAGNNNNNCTT	4 cut(s)	29, 61, 2258, 2290
FaqI	GGGAC	3 cut(s)	514, 1259, 1328
FauNDI	CATATG	1 cut(s)	1663
Fnu4HI	GCNGC	9 cut(s)	32, 138, 183, 327, 1167, 1760, 2031, 2034, 2049
FokI	GGATG	5 cut(s)	686, 1193, 1250, 1451, 1926
FriOI	GRGCYC	4 cut(s)	19, 133, 461, 1138
Fsp4HI	GCNGC	9 cut(s)	32, 138, 183, 327, 1167, 1760, 2031, 2034, 2049
FspBI	CTAG	4 cut(s)	618, 1028, 1656, 1695
GlaI	GCGC	2 cut(s)	44, 113
GluI	GCNGC	9 cut(s)	32, 138, 183, 327, 1167, 1760, 2031, 2034, 2049
GsaI	CCCAGC	1 cut(s)	288
GsuI	CTGGAG	1 cut(s)	2273
HaeIII	GGCC	7 cut(s)	745, 758, 1072, 1497, 1882, 2030, 2344
HapII	CCGG	4 cut(s)	107, 1436, 2112, 2345
HgaI	GACGC	3 cut(s)	49, 1325, 1687
HhaI	GCGC	2 cut(s)	45, 114
Hin6I	GCGC	2 cut(s)	43, 112
HinP1I	GCGC	2 cut(s)	43, 112
HincII	GTYRAC	1 cut(s)	740
HindII	GTYRAC	1 cut(s)	740
HindIII	AAGCTT	1 cut(s)	1302
HpaII	CCGG	4 cut(s)	107, 1436, 2112, 2345
HphI	GGTGA	3 cut(s)	983, 1070, 1370
Hpy166II	GTNNAC	8 cut(s)	104, 539, 740, 804, 850, 1061, 2060, 2252
Hpy8I	GTNNAC	8 cut(s)	104, 539, 740, 804, 850, 1061, 2060, 2252
Hpy99I	CGWCG	2 cut(s)	1703, 2226
HpyAV	CCTTC	8 cut(s)	464, 757, 818, 995, 1349, 1516, 2015, 2134
HpyCH4III	ACNGT	8 cut(s)	340, 373, 550, 1250, 1380, 1637, 1817, 2305
HpyCH4IV	ACGT	7 cut(s)	479, 750, 829, 1477, 1811, 1948, 2178
HpyF10VI	GCNNNNNNNGC	8 cut(s)	40, 137, 169, 425, 446, 1088, 1553, 2057
HpySE526I	ACGT	7 cut(s)	479, 750, 829, 1477, 1811, 1948, 2178
HspAI	GCGC	2 cut(s)	43, 112
Kpn2I	TCCGGA	1 cut(s)	1435
LguI	GCTCTTC	2 cut(s)	466, 1143
LmnI	GCTCC	5 cut(s)	109, 153, 169, 1825, 2239
Lsp1109I	GCAGC	6 cut(s)	43, 124, 1153, 1771, 2020, 2035
LweI	GCATC	7 cut(s)	150, 253, 458, 937, 2241, 2280, 2359
MaeI	CTAG	4 cut(s)	618, 1028, 1656, 1695
MaeII	ACGT	7 cut(s)	479, 750, 829, 1477, 1811, 1948, 2178
MaeIII	GTNAC	5 cut(s)	118, 1292, 1637, 2114, 2297
MflI	RGATCY	3 cut(s)	289, 1392, 1525
MhlI	GDGCHC	9 cut(s)	19, 133, 461, 806, 835, 1138, 1822, 2062, 2263
MlsI	TGGCCA	1 cut(s)	1072
MluNI	TGGCCA	1 cut(s)	1072
MlyI	GAGTC	6 cut(s)	488, 950, 1208, 1544, 1775, 2323
MmeI	TCCRAC	3 cut(s)	359, 425, 1362
Mox20I	TGGCCA	1 cut(s)	1072
Mph1103I	ATGCAT	2 cut(s)	2072, 2312
MroI	TCCGGA	1 cut(s)	1435
MroXI	GAANNNNTTC	1 cut(s)	1505
MscI	TGGCCA	1 cut(s)	1072
MseI	TTAA	4 cut(s)	702, 1844, 2108, 2181
MslI	CAYNNNNRTG	4 cut(s)	551, 1419, 2065, 2266
Msp20I	TGGCCA	1 cut(s)	1072
MspA1I	CMGCKG	4 cut(s)	151, 662, 889, 2033
MspI	CCGG	4 cut(s)	107, 1436, 2112, 2345
MspR9I	CCNGG	4 cut(s)	1163, 1260, 1879, 1944
Mva1269I	GAATGC	2 cut(s)	934, 1568
MvaI	CCWGG	4 cut(s)	1163, 1260, 1879, 1944
MvnI	CGCG	3 cut(s)	13, 43, 144
MwoI	GCNNNNNNNGC	8 cut(s)	40, 137, 169, 425, 446, 1088, 1553, 2057
NcoI	CCATGG	2 cut(s)	951, 1956
NdeI	CATATG	1 cut(s)	1663
NheI	GCTAGC	1 cut(s)	1655
NlaIV	GGNNCC	7 cut(s)	530, 915, 999, 1496, 1527, 2241, 2285
NmuCI	GTSAC	4 cut(s)	118, 1292, 1637, 2297
NruI	TCGCGA	1 cut(s)	13
NsiI	ATGCAT	2 cut(s)	2072, 2312
NspI	RCATGY	4 cut(s)	408, 1418, 1749, 2161
OliI	CACNNNNGTG	2 cut(s)	551, 2266
PaeR7I	CTCGAG	1 cut(s)	1143
PciI	ACATGT	2 cut(s)	404, 2157
PciSI	GCTCTTC	2 cut(s)	466, 1143
PctI	GAATGC	2 cut(s)	934, 1568
PdmI	GAANNNNTTC	1 cut(s)	1505
PfeI	GAWTC	4 cut(s)	596, 785, 1340, 1560
PfoI	TCCNGGA	1 cut(s)	1942
PinAI	ACCGGT	1 cut(s)	2111
PkrI	GCNGC	9 cut(s)	33, 139, 184, 328, 1168, 1761, 2032, 2035, 2050
PleI	GAGTC	6 cut(s)	488, 950, 1207, 1543, 1774, 2322
PpsI	GAGTC	6 cut(s)	488, 950, 1207, 1543, 1774, 2322
Ppu21I	YACGTR	3 cut(s)	751, 830, 1812
PpuMI	RGGWCCY	5 cut(s)	528, 913, 982, 1512, 2284
PscI	ACATGT	2 cut(s)	404, 2157
PshBI	ATTAAT	1 cut(s)	1844
Psp124BI	GAGCTC	2 cut(s)	19, 461
Psp1406I	AACGTT	1 cut(s)	1477
Psp5II	RGGWCCY	5 cut(s)	528, 913, 982, 1512, 2284
Psp6I	CCWGG	4 cut(s)	1161, 1258, 1877, 1942
PspEI	GGTNACC	1 cut(s)	2114
PspFI	CCCAGC	1 cut(s)	284
PspGI	CCWGG	4 cut(s)	1161, 1258, 1877, 1942
PspN4I	GGNNCC	7 cut(s)	530, 915, 999, 1496, 1527, 2241, 2285
PspPI	GGNCC	9 cut(s)	528, 757, 913, 982, 1495, 1512, 1624, 2208, 2284
PspPPI	RGGWCCY	5 cut(s)	528, 913, 982, 1512, 2284
PspXI	VCTCGAGB	1 cut(s)	1143
PstI	CTGCAG	1 cut(s)	1549
PsuI	RGATCY	3 cut(s)	289, 1392, 1525
PvuII	CAGCTG	2 cut(s)	662, 889
RruI	TCGCGA	1 cut(s)	13
RsaI	GTAC	6 cut(s)	356, 1207, 1782, 1814, 2251, 2321
RsaNI	GTAC	6 cut(s)	355, 1206, 1781, 1813, 2250, 2320
RseI	CAYNNNNRTG	4 cut(s)	551, 1419, 2065, 2266
SacI	GAGCTC	2 cut(s)	19, 461
SapI	GCTCTTC	2 cut(s)	466, 1143
SaqAI	TTAA	4 cut(s)	702, 1844, 2108, 2181
SatI	GCNGC	9 cut(s)	32, 138, 183, 327, 1167, 1760, 2031, 2034, 2049
Sau96I	GGNCC	9 cut(s)	528, 757, 913, 982, 1495, 1512, 1624, 2208, 2284
ScaI	AGTACT	1 cut(s)	1207
SchI	GAGTC	6 cut(s)	488, 950, 1208, 1544, 1775, 2323
ScrFI	CCNGG	4 cut(s)	1163, 1260, 1879, 1944
SduI	GDGCHC	9 cut(s)	19, 133, 461, 806, 835, 1138, 1822, 2062, 2263
SfaNI	GCATC	7 cut(s)	150, 253, 458, 937, 2241, 2280, 2359
SfcI	CTRYAG	1 cut(s)	1545
Sfr274I	CTCGAG	1 cut(s)	1143
SinI	GGWCC	7 cut(s)	528, 913, 982, 1512, 1624, 2208, 2284
SlaI	CTCGAG	1 cut(s)	1143
SmiMI	CAYNNNNRTG	4 cut(s)	551, 1419, 2065, 2266
SmlI	CTYRAG	3 cut(s)	18, 908, 1143
SmoI	CTYRAG	3 cut(s)	18, 908, 1143
SpeI	ACTAGT	1 cut(s)	1027
SsiI	CCGC	5 cut(s)	151, 182, 327, 2031, 2353
SspI	AATATT	2 cut(s)	653, 1848
SspMI	CTAG	4 cut(s)	618, 1028, 1656, 1695
SstI	GAGCTC	2 cut(s)	19, 461
StyD4I	CCNGG	4 cut(s)	1161, 1258, 1877, 1942
StyI	CCWWGG	3 cut(s)	532, 951, 1956
TaaI	ACNGT	8 cut(s)	340, 373, 550, 1250, 1380, 1637, 1817, 2305
TaiI	ACGT	7 cut(s)	482, 753, 832, 1480, 1814, 1951, 2181
TaqI	TCGA	6 cut(s)	209, 1144, 1446, 1572, 1964, 2367
TaqII	GACCGA	1 cut(s)	2097
TatI	WGTACW	4 cut(s)	354, 1205, 1780, 2319
TauI	GCSGC	3 cut(s)	185, 329, 2033
TfiI	GAWTC	4 cut(s)	596, 785, 1340, 1560
Tru1I	TTAA	4 cut(s)	702, 1844, 2108, 2181
Tru9I	TTAA	4 cut(s)	702, 1844, 2108, 2181
TscAI	CASTG	7 cut(s)	553, 734, 1350, 1642, 1822, 2067, 2268
TseFI	GTSAC	4 cut(s)	118, 1292, 1637, 2297
TseI	GCWGC	6 cut(s)	31, 137, 1166, 1759, 2033, 2048
Tsp45I	GTSAC	4 cut(s)	118, 1292, 1637, 2297
TspRI	CASTG	7 cut(s)	553, 734, 1350, 1642, 1822, 2067, 2268
VneI	GTGCAC	2 cut(s)	802, 2058
VpaK11BI	GGWCC	7 cut(s)	528, 913, 982, 1512, 1624, 2208, 2284
VspI	ATTAAT	1 cut(s)	1844
XagI	CCTNNNNNAGG	1 cut(s)	1370
XapI	RAATTY	4 cut(s)	274, 632, 903, 1430
XceI	RCATGY	4 cut(s)	408, 1418, 1749, 2161
XhoI	CTCGAG	1 cut(s)	1143
XmnI	GAANNNNTTC	1 cut(s)	1505
XspI	CTAG	4 cut(s)	618, 1028, 1656, 1695
ZrmI	AGTACT	1 cut(s)	1207
Zsp2I	ATGCAT	2 cut(s)	2072, 2312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.