Rh7AG078400

pre-rRNA-processing protein TSR1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0010916
Physical Location & Seq
Reverse (-)
5588049 .. 5594255
6207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG078400.1

Sequence Viewer

Length: 2232 bp
ATGGGAGGTTCGCGGAACCAAGTGAACAAGGCTCACAAGACGCGGTTTTCGTCCAAGTCGTCGCGGAACCTGCACAAAACTTCAGATAAGAGTAGGATCGGTAAATCGGAGCACAATGTTGCAAAGGGAGCTCGGGCGGCTCGAATTCAGAGAAATAAGATGGTACGGGAGCAGAAGCGGGCTGCTCTTTTGAAAGAGAAGAGAGCTTCGAGTGGATCAGCAAGTCCTCCCCGTGTGATTGTTCTATTCGGGCTTTCCGCGGATGTAAAGCTCAGTTCGCTTTCTGAGGATATTCTTTCTTTGCTGTCTCCACAGGGCTATGGAGGTGCTTTGCCTACTGTCGCTTCTCCGGAGTACAGGCTGAGAGCAACGGTACTGCAAGCACCTCATGGGGATTTGCAATCATGTTTGGAAATGGCTAAGGTTGCTGATCTCATTGCTTTTGTGGCTTCAGCAACCTCTTCGTGTGAAGGAGAGTCTGACTACATTGACTCATTTGGTAGTCAATGTCTTTCTGTGTTTAGGTCTCTTGGTCTACCAAGCACCGTCGTGCTAATACGTGATCTACCTACTGAGGCGAAAAGAAGACATGAGTCAAAGAAAACATGTAGTTCCAGTCTTGCTTCTGAATTTCCCGAAGATTGTAAATTTTATCCAGCTGATACAAAGGACGAGTTGCACAAGTTCATGTGGCTTTTTAAGGAGCAAAGGCTCTCAGTTCCTCACTGGCGAAGTCAGCGACCTTACTTGATGGCTCAAAAGGTTGAAATGGTAGAAGATGATATGAATCCGGGAACAAGTACCCTTCTCCTCACTGGATATGTGCGAGCTCGCAGTCTTTCTGTTAATCAACTGGTTCATGTTTCTGGTGCCGGGGATTTCCAGTTGTGCAAAATGGAAATTCTCAAGGATCCACGTCCTTTGAATGCAAGAAAAGAGCAGGATGTCATGGATGCAGATGAAGTGGATGATGTTGTGGTTCGTTCTTTGGTTCCCGATCCGCTGAAGCAGGAGGCTTTACTTGTTGAGAATGTTCCTGATTCCCTTGATAATGAACAGACATGGCCAACAGAAGAAGAAATGGCAGATGCTGAAAAAAACCAAAAACAAAAAAAGAGGAGAAAAAGGATTCTTCCTCGAGGCACTTCAGAATACCAGGCTGCTTGGATTATCAATGATACAGATGAAGAGGAGTCCGGTACTGATGAAGAAGTTGATGATATGGTAATGGATGAAACAGAGAGTGGTCATCCTGGTGAAGAGGGCAATCATTCAGATCTCAGTGACGATCAAGCTTCTTTAGACTTGAGGGACTCTGACAAAGAAACTGATGCTGATTCAGTGATGATGGACGGTGAAAATTTGACCAAGGAACAGTTGGAGGATGAGATCAAAAAAATAAAGGAAGCCCATGCTGATGATGAGGAATTTCCAGATGAAGTGGATACACCATTAGACTTTCCAGCTAGAAAACGTTTTGCGAAGTATAGAGGGCTCAAGTCCTTTAGGACCTCTTCATGGGATCCCAAAGAGTCTCTACCTCCAGAATATGCTAGAATCTTTGCCTTCGACAATTTCAACAGGACACAGAAAAGCATCCTTGCTAAAGCTTTAGCTATGGAGCAAGAAAACGAGGATGACTGTGCAACAGCTAGCACATATGCAAGGCTGTATATCAAAGAAGTGCCAAATACTGTTGCTTCTAAATTATGTATGCGTGCAAATACTATGCCTATCATAGCATGTGGCCTTTTGCAGCATGAGTCCAAGATGTCTGTACTCCATTTCAGCTTAAAAAAGCATGACACTTACAGTGATCCTATCAAAACCAAAGACGAATTAATTTTTCATGTTGGCTTTCGCCAATTTGTTGCTAGGCCAATATTCTCTACCGATAACATGAGTTCTGACAAGCACAAAATGGAGAGGTTCCTTCATCCAGGACGTTTTTCCATGGCGTCAATTTATGCTCCTATTACTTTTCCAGCTCTTCCTTTAATAGCTTTCAAGAGTTCTAAAGGGGAGGCCACTGCACCTACAGTTGCTGCTGTTGGTTCTCTGAGAAGCATTGATCCTGACAGGATTATTCTAAAGAAGATCATTTTAACAGGTTATCCTCAACGAGTTTCGAAAAAGAAAGCTGCTGTGAGGTATATGTTCCATAATCCAGAGGATGTGAGATGGTTCAAGGTGAGGGAATCTCTTATCATATCATTTCAACATTTCTTTTGA

Protein Analysis

743

Amino Acids

83.71

Weight (kDa)

6.23

Isoelectric Point (pI)

50.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tsr1_G-like PF22298 120 - 226 3.2e-06 Tsr1, G-like domain
AARP2CN PF08142 241 - 305 5.6e-21 AARP2CN (NUC121) domain
RIBIOP_C PF04950 481 - 730 3e-87 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010916)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42440
fragaria_vesca FvH4_5g12620 FvH4_5g12620 FvH4_5g12620
malus_domestica MD06G1211900.v1.1 MD14G1222500.v1.1
prunus_persica Prupe.5G218100_v2.0.a1
pyrus_communis pycom14g18410 pycom14g18420
rosa_chinensis RchiOBHm_Chr7g0184701
rosa_laevigata RLG00000004958
rosa_multiflora Rmu_ssc0000289.1_g000022
rosa_roxburghii Rroxscaffold_3G00269420
rosa_rugosa Rorug06G0464600 Rorug06G0464600
rosa_samantha Rh7AG078400 Rh7BG068900 Rh7CG069700 Rh7DG069100
rosa_wichuraiana Rw7G005700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 1137
Acc36I ACCTGC 1 cut(s) 78
AccB1I GGYRCC 1 cut(s) 869
AccI GTMKAC 1 cut(s) 535
AccII CGCG 4 cut(s) 13, 43, 64, 260
AccIII TCCGGA 1 cut(s) 349
AciI CCGC 8 cut(s) 13, 43, 64, 137, 178, 258, 260, 1001
AclI AACGTT 1 cut(s) 1474
AclWI GGATC 9 cut(s) 104, 223, 905, 918, 992, 1517, 1530, 1811, 2066
AcoI YGGCCR 1 cut(s) 1064
AcsI RAATTY 6 cut(s) 144, 629, 647, 900, 1360, 1427
AcuI CTGAAG 4 cut(s) 66, 435, 1025, 1131
AcyI GRCGYC 1 cut(s) 1958
AfaI GTAC 6 cut(s) 165, 356, 375, 802, 1201, 1779
AfiI CCNNNNNNNGG 1 cut(s) 1518
AflIII ACRYGT 1 cut(s) 605
AgsI TTSAA 7 cut(s) 193, 767, 925, 1579, 2008, 2188, 2219
AjiI CACGTC 1 cut(s) 917
AjnI CCWGG 3 cut(s) 1155, 1252, 1939
AleI CACNNNNGTG 1 cut(s) 548
Alw21I GWGCWC 3 cut(s) 114, 133, 832
Alw26I GTCTC 3 cut(s) 312, 531, 1539
AlwI GGATC 9 cut(s) 104, 223, 905, 918, 992, 1517, 1530, 1811, 2066
AlwNI CAGNNNCTG 2 cut(s) 1091, 2045
Ama87I CYCGRG 2 cut(s) 132, 1137
Aor13HI TCCGGA 1 cut(s) 349
AoxI GGCC 4 cut(s) 1064, 1747, 1877, 2025
ApeKI GCWGC 5 cut(s) 182, 1160, 1756, 2045, 2141
ApoI RAATTY 6 cut(s) 144, 629, 647, 900, 1360, 1427
ArsI GACNNNNNNTTYG 2 cut(s) 31, 63
AseI ATTAAT 1 cut(s) 1841
AspS9I GGNCC 1 cut(s) 1509
AsuC2I CCSGG 2 cut(s) 792, 874
AsuHPI GGTGA 3 cut(s) 1268, 1367, 2203
AsuII TTCGAA 1 cut(s) 2129
AsuNHI GCTAGC 1 cut(s) 1652
AvaI CYCGRG 2 cut(s) 132, 1137
AvaII GGWCC 1 cut(s) 1509
BalI TGGCCA 1 cut(s) 1066
BamHI GGATCC 2 cut(s) 910, 1522
BanI GGYRCC 1 cut(s) 869
BanII GRGCYC 3 cut(s) 133, 832, 1497
BbsI GAAGAC 1 cut(s) 592
Bbv12I GWGCWC 3 cut(s) 114, 133, 832
BbvI GCAGC 5 cut(s) 169, 1147, 1768, 2032, 2128
BccI CCATC 4 cut(s) 154, 745, 1342, 2175
BcgI CGANNNNNNTGC 2 cut(s) 444, 478
BciT130I CCWGG 3 cut(s) 1157, 1254, 1941
BciVI GTATCC 1 cut(s) 1438
BcnI CCSGG 2 cut(s) 792, 874
BcoDI GTCTC 3 cut(s) 312, 531, 1539
BfaI CTAG 4 cut(s) 1467, 1554, 1653, 1875
BfmI CTRYAG 1 cut(s) 2037
BfuAI ACCTGC 1 cut(s) 78
BfuI GTATCC 1 cut(s) 1438
BglII AGATCT 1 cut(s) 1276
BisI GCNGC 6 cut(s) 138, 183, 1161, 1757, 2046, 2142
BlsI GCNGC 6 cut(s) 139, 184, 1162, 1758, 2047, 2143
Bme1390I CCNGG 5 cut(s) 792, 874, 1157, 1254, 1941
Bme18I GGWCC 1 cut(s) 1509
BmeT110I CYCGRG 2 cut(s) 132, 1137
BmgBI CACGTC 1 cut(s) 917
BmgT120I GGNCC 1 cut(s) 1509
BmiI GGNNCC 7 cut(s) 17, 68, 871, 912, 993, 1524, 1931
BmrFI CCNGG 5 cut(s) 792, 874, 1157, 1254, 1941
BmsI GCATC 4 cut(s) 943, 1078, 1321, 1605
BmtI GCTAGC 1 cut(s) 1656
BoxI GACNNNNGTC 1 cut(s) 592
BpiI GAAGAC 1 cut(s) 592
BplI GAGNNNNNCTC 2 cut(s) 2185, 2217
BpmI CTGGAG 1 cut(s) 1527
Bpu10I CCTNAGC 1 cut(s) 420
Bpu14I TTCGAA 1 cut(s) 2129
BpuEI CTTGAG 3 cut(s) 890, 1327, 1481
BpuMI CCSGG 2 cut(s) 792, 874
BsaAI YACGTR 1 cut(s) 560
BsaBI GATNNNNATC 1 cut(s) 786
BsaHI GRCGYC 1 cut(s) 1958
BsaI GGTCTC 1 cut(s) 531
BsaJI CCNNGG 4 cut(s) 258, 873, 1368, 1953
BsaWI WCCGGW 2 cut(s) 349, 1196
Bsc4I CCNNNNNNNGG 1 cut(s) 1518
Bse1I ACTGG 5 cut(s) 615, 731, 820, 858, 883
Bse3DI GCAATG 1 cut(s) 435
Bse8I GATNNNNATC 1 cut(s) 786
BseAI TCCGGA 1 cut(s) 349
BseBI CCWGG 3 cut(s) 1157, 1254, 1941
BseDI CCNNGG 4 cut(s) 258, 873, 1368, 1953
BseJI GATNNNNATC 1 cut(s) 786
BseLI CCNNNNNNNGG 1 cut(s) 1518
BseMI GCAATG 1 cut(s) 435
BseMII CTCAG 7 cut(s) 276, 286, 353, 564, 729, 1294, 2051
BseNI ACTGG 5 cut(s) 615, 731, 820, 858, 883
BseRI GAGGAG 3 cut(s) 800, 1132, 1205
BseXI GCAGC 5 cut(s) 169, 1147, 1768, 2032, 2128
BsgI GTGCAG 2 cut(s) 56, 2016
Bsh1236I CGCG 4 cut(s) 13, 43, 64, 260
BshFI GGCC 4 cut(s) 1066, 1749, 1879, 2027
BshNI GGYRCC 1 cut(s) 869
BsiHKAI GWGCWC 3 cut(s) 114, 133, 832
BsiHKCI CYCGRG 2 cut(s) 132, 1137
BsiSI CCGG 4 cut(s) 350, 791, 873, 1197
BslFI GGGAC 1 cut(s) 1325
BslI CCNNNNNNNGG 1 cut(s) 1518
BsmAI GTCTC 3 cut(s) 312, 531, 1539
BsmFI GGGAC 1 cut(s) 1325
BsmI GAATGC 1 cut(s) 931
BsnI GGCC 4 cut(s) 1066, 1749, 1879, 2027
Bso31I GGTCTC 1 cut(s) 531
BsoBI CYCGRG 2 cut(s) 132, 1137
Bsp119I TTCGAA 1 cut(s) 2129
Bsp1286I GDGCHC 4 cut(s) 114, 133, 832, 1497
Bsp13I TCCGGA 1 cut(s) 349
Bsp19I CCATGG 1 cut(s) 1953
BspACI CCGC 8 cut(s) 13, 43, 64, 137, 178, 258, 260, 1001
BspANI GGCC 4 cut(s) 1066, 1749, 1879, 2027
BspCNI CTCAG 7 cut(s) 277, 285, 354, 565, 728, 1293, 2052
BspEI TCCGGA 1 cut(s) 349
BspFNI CGCG 4 cut(s) 13, 43, 64, 260
BspLI GGNNCC 7 cut(s) 17, 68, 871, 912, 993, 1524, 1931
BspMI ACCTGC 1 cut(s) 78
BspOI GCTAGC 1 cut(s) 1656
BspPI GGATC 9 cut(s) 104, 223, 905, 918, 992, 1517, 1530, 1811, 2066
BspQI GCTCTTC 1 cut(s) 1995
BspT104I TTCGAA 1 cut(s) 2129
BspT107I GGYRCC 1 cut(s) 869
BspTNI GGTCTC 1 cut(s) 531
BsrDI GCAATG 1 cut(s) 435
BsrI ACTGG 5 cut(s) 615, 731, 820, 858, 883
BssECI CCNNGG 4 cut(s) 258, 873, 1368, 1953
BssNI GRCGYC 1 cut(s) 1958
BssT1I CCWWGG 2 cut(s) 1368, 1953
Bst2UI CCWGG 3 cut(s) 1157, 1254, 1941
Bst4CI ACNGT 9 cut(s) 340, 373, 547, 1355, 1377, 1643, 1696, 1814, 2041
Bst6I CTCTTC 6 cut(s) 194, 466, 1182, 1254, 1519, 1995
BstACI GRCGYC 1 cut(s) 1958
BstBAI YACGTR 1 cut(s) 560
BstBI TTCGAA 1 cut(s) 2129
BstC8I GCNNGC 6 cut(s) 180, 381, 828, 832, 1654, 1719
BstDEI CTNAG 8 cut(s) 272, 285, 362, 420, 573, 715, 1280, 2060
BstDSI CCRYGG 2 cut(s) 258, 1953
BstFNI CGCG 4 cut(s) 13, 43, 64, 260
BstMAI GTCTC 3 cut(s) 312, 531, 1539
BstMWI GCNNNNNNNGC 7 cut(s) 70, 128, 137, 277, 425, 446, 736
BstNI CCWGG 3 cut(s) 1157, 1254, 1941
BstNSI RCATGY 2 cut(s) 609, 1746
BstPAI GACNNNNGTC 1 cut(s) 592
BstSCI CCNGG 5 cut(s) 790, 872, 1155, 1252, 1939
BstSFI CTRYAG 1 cut(s) 2037
BstUI CGCG 4 cut(s) 13, 43, 64, 260
BstV1I GCAGC 5 cut(s) 169, 1147, 1768, 2032, 2128
BstV2I GAAGAC 1 cut(s) 592
BstX2I RGATCY 3 cut(s) 910, 1276, 1522
BstYI RGATCY 3 cut(s) 910, 1276, 1522
BsuI GTATCC 1 cut(s) 1438
BsuRI GGCC 4 cut(s) 1066, 1749, 1879, 2027
BtgI CCRYGG 2 cut(s) 258, 1953
BtrI CACGTC 1 cut(s) 917
BtsI GCAGTG 1 cut(s) 2028
BtsIMutI CAGTG 6 cut(s) 724, 813, 1288, 1347, 1819, 2028
BveI ACCTGC 1 cut(s) 78
Cac8I GCNNGC 6 cut(s) 180, 381, 828, 832, 1654, 1719
CaiI CAGNNNCTG 2 cut(s) 1091, 2045
Cfr13I GGNCC 1 cut(s) 1509
Cfr42I CCGCGG 1 cut(s) 261
CseI GACGC 2 cut(s) 49, 1947
Csp6I GTAC 6 cut(s) 164, 355, 374, 801, 1200, 1778
CspCI CAANNNNNGTGG 2 cut(s) 903, 938
CviQI GTAC 6 cut(s) 164, 355, 374, 801, 1200, 1778
DdeI CTNAG 8 cut(s) 272, 285, 362, 420, 573, 715, 1280, 2060
EaeI YGGCCR 1 cut(s) 1064
Eam1104I CTCTTC 6 cut(s) 194, 466, 1182, 1254, 1519, 1995
EarI CTCTTC 6 cut(s) 194, 466, 1182, 1254, 1519, 1995
Ecl136II GAGCTC 2 cut(s) 131, 830
Eco130I CCWWGG 2 cut(s) 1368, 1953
Eco24I GRGCYC 3 cut(s) 133, 832, 1497
Eco31I GGTCTC 1 cut(s) 531
Eco47I GGWCC 1 cut(s) 1509
Eco53kI GAGCTC 2 cut(s) 131, 830
Eco57I CTGAAG 4 cut(s) 66, 435, 1025, 1131
Eco88I CYCGRG 2 cut(s) 132, 1137
EcoICRI GAGCTC 2 cut(s) 131, 830
EcoO109I RGGNCCY 1 cut(s) 1509
EcoRI GAATTC 1 cut(s) 144
EcoRII CCWGG 3 cut(s) 1155, 1252, 1939
EcoT14I CCWWGG 2 cut(s) 1368, 1953
EcoT38I GRGCYC 3 cut(s) 133, 832, 1497
ErhI CCWWGG 2 cut(s) 1368, 1953
FaqI GGGAC 1 cut(s) 1325
FauI CCCGC 1 cut(s) 171
FauNDI CATATG 1 cut(s) 1660
FblI GTMKAC 1 cut(s) 535
Fnu4HI GCNGC 6 cut(s) 138, 183, 1161, 1757, 2046, 2142
FriOI GRGCYC 3 cut(s) 133, 832, 1497
Fsp4HI GCNGC 6 cut(s) 138, 183, 1161, 1757, 2046, 2142
FspBI CTAG 4 cut(s) 1467, 1554, 1653, 1875
GluI GCNGC 6 cut(s) 138, 183, 1161, 1757, 2046, 2142
GsuI CTGGAG 1 cut(s) 1527
HaeIII GGCC 4 cut(s) 1066, 1749, 1879, 2027
HapII CCGG 4 cut(s) 350, 791, 873, 1197
HgaI GACGC 2 cut(s) 49, 1947
Hin1I GRCGYC 1 cut(s) 1958
HindIII AAGCTT 2 cut(s) 1293, 1608
HpaII CCGG 4 cut(s) 350, 791, 873, 1197
HphI GGTGA 3 cut(s) 1268, 1367, 2203
Hpy166II GTNNAC 2 cut(s) 25, 536
Hpy188III TCNNGA 9 cut(s) 350, 635, 995, 1037, 1433, 1544, 2008, 2075, 2168
Hpy8I GTNNAC 2 cut(s) 25, 536
Hpy99I CGWCG 2 cut(s) 64, 551
HpyAV CCTTC 4 cut(s) 464, 815, 1576, 1943
HpyCH4III ACNGT 9 cut(s) 340, 373, 547, 1355, 1377, 1643, 1696, 1814, 2041
HpyCH4IV ACGT 4 cut(s) 559, 916, 1474, 1945
HpyF10VI GCNNNNNNNGC 7 cut(s) 70, 128, 137, 277, 425, 446, 736
HpyF3I CTNAG 8 cut(s) 272, 285, 362, 420, 573, 715, 1280, 2060
HpySE526I ACGT 4 cut(s) 559, 916, 1474, 1945
Hsp92I GRCGYC 1 cut(s) 1958
Kpn2I TCCGGA 1 cut(s) 349
KspI CCGCGG 1 cut(s) 261
LguI GCTCTTC 1 cut(s) 1995
LmnI GCTCC 6 cut(s) 109, 128, 169, 703, 1621, 1975
Lsp1109I GCAGC 5 cut(s) 169, 1147, 1768, 2032, 2128
LweI GCATC 4 cut(s) 943, 1078, 1321, 1605
MaeI CTAG 4 cut(s) 1467, 1554, 1653, 1875
MaeII ACGT 4 cut(s) 559, 916, 1474, 1945
MaeIII GTNAC 1 cut(s) 1283
MflI RGATCY 3 cut(s) 910, 1276, 1522
MhlI GDGCHC 4 cut(s) 114, 133, 832, 1497
MlsI TGGCCA 1 cut(s) 1066
MluNI TGGCCA 1 cut(s) 1066
MlyI GAGTC 7 cut(s) 485, 485, 602, 1202, 1307, 1541, 1772
MmeI TCCRAC 1 cut(s) 1359
Mox20I TGGCCA 1 cut(s) 1066
MroI TCCGGA 1 cut(s) 349
MscI TGGCCA 1 cut(s) 1066
MseI TTAA 6 cut(s) 699, 846, 1793, 1841, 1997, 2105
MslI CAYNNNNRTG 3 cut(s) 548, 1254, 1416
Msp20I TGGCCA 1 cut(s) 1066
MspA1I CMGCKG 3 cut(s) 260, 659, 1003
MspI CCGG 4 cut(s) 350, 791, 873, 1197
MspR9I CCNGG 5 cut(s) 792, 874, 1157, 1254, 1941
Mva1269I GAATGC 1 cut(s) 931
MvaI CCWGG 3 cut(s) 1157, 1254, 1941
MvnI CGCG 4 cut(s) 13, 43, 64, 260
MwoI GCNNNNNNNGC 7 cut(s) 70, 128, 137, 277, 425, 446, 736
NciI CCSGG 2 cut(s) 792, 874
NcoI CCATGG 1 cut(s) 1953
NdeI CATATG 1 cut(s) 1660
NheI GCTAGC 1 cut(s) 1652
NlaIV GGNNCC 7 cut(s) 17, 68, 871, 912, 993, 1524, 1931
NmuCI GTSAC 1 cut(s) 1283
NspI RCATGY 2 cut(s) 609, 1746
NspV TTCGAA 1 cut(s) 2129
OliI CACNNNNGTG 1 cut(s) 548
PaeR7I CTCGAG 1 cut(s) 1137
PciI ACATGT 1 cut(s) 605
PciSI GCTCTTC 1 cut(s) 1995
PcsI WCGNNNNNNNCGW 3 cut(s) 47, 56, 139
PctI GAATGC 1 cut(s) 931
PfeI GAWTC 6 cut(s) 787, 1040, 1129, 1337, 1557, 2198
PfoI TCCNGGA 2 cut(s) 790, 1939
PkrI GCNGC 6 cut(s) 139, 184, 1162, 1758, 2047, 2143
PleI GAGTC 7 cut(s) 484, 485, 601, 1201, 1307, 1540, 1771
PpsI GAGTC 7 cut(s) 484, 485, 601, 1201, 1307, 1540, 1771
Ppu21I YACGTR 1 cut(s) 560
PpuMI RGGWCCY 1 cut(s) 1509
PscI ACATGT 1 cut(s) 605
PshAI GACNNNNGTC 1 cut(s) 592
PshBI ATTAAT 1 cut(s) 1841
Psp124BI GAGCTC 2 cut(s) 133, 832
Psp1406I AACGTT 1 cut(s) 1474
Psp5II RGGWCCY 1 cut(s) 1509
Psp6I CCWGG 3 cut(s) 1155, 1252, 1939
PspGI CCWGG 3 cut(s) 1155, 1252, 1939
PspN4I GGNNCC 7 cut(s) 17, 68, 871, 912, 993, 1524, 1931
PspPI GGNCC 1 cut(s) 1509
PspPPI RGGWCCY 1 cut(s) 1509
PspXI VCTCGAGB 1 cut(s) 1137
PstNI CAGNNNCTG 2 cut(s) 1091, 2045
PsuI RGATCY 3 cut(s) 910, 1276, 1522
PvuII CAGCTG 1 cut(s) 659
RsaI GTAC 6 cut(s) 165, 356, 375, 802, 1201, 1779
RsaNI GTAC 6 cut(s) 164, 355, 374, 801, 1200, 1778
RseI CAYNNNNRTG 3 cut(s) 548, 1254, 1416
SacI GAGCTC 2 cut(s) 133, 832
SacII CCGCGG 1 cut(s) 261
SapI GCTCTTC 1 cut(s) 1995
SaqAI TTAA 6 cut(s) 699, 846, 1793, 1841, 1997, 2105
SatI GCNGC 6 cut(s) 138, 183, 1161, 1757, 2046, 2142
Sau96I GGNCC 1 cut(s) 1509
SchI GAGTC 7 cut(s) 485, 485, 602, 1202, 1307, 1541, 1772
ScrFI CCNGG 5 cut(s) 792, 874, 1157, 1254, 1941
SduI GDGCHC 4 cut(s) 114, 133, 832, 1497
SfaNI GCATC 4 cut(s) 943, 1078, 1321, 1605
SfcI CTRYAG 1 cut(s) 2037
Sfr274I CTCGAG 1 cut(s) 1137
Sfr303I CCGCGG 1 cut(s) 261
SfuI TTCGAA 1 cut(s) 2129
SgrBI CCGCGG 1 cut(s) 261
SinI GGWCC 1 cut(s) 1509
SlaI CTCGAG 1 cut(s) 1137
SmiMI CAYNNNNRTG 3 cut(s) 548, 1254, 1416
SmlI CTYRAG 4 cut(s) 905, 1137, 1306, 1496
SmoI CTYRAG 4 cut(s) 905, 1137, 1306, 1496
SsiI CCGC 8 cut(s) 13, 43, 64, 137, 178, 258, 260, 1001
SspI AATATT 1 cut(s) 1884
SspMI CTAG 4 cut(s) 1467, 1554, 1653, 1875
SstI GAGCTC 2 cut(s) 133, 832
StyD4I CCNGG 5 cut(s) 790, 872, 1155, 1252, 1939
StyI CCWWGG 2 cut(s) 1368, 1953
TaaI ACNGT 9 cut(s) 340, 373, 547, 1355, 1377, 1643, 1696, 1814, 2041
TaiI ACGT 4 cut(s) 562, 919, 1477, 1948
TaqI TCGA 5 cut(s) 142, 209, 1138, 1569, 2129
TatI WGTACW 2 cut(s) 354, 1777
TauI GCSGC 1 cut(s) 140
TfiI GAWTC 6 cut(s) 787, 1040, 1129, 1337, 1557, 2198
Tru1I TTAA 6 cut(s) 699, 846, 1793, 1841, 1997, 2105
Tru9I TTAA 6 cut(s) 699, 846, 1793, 1841, 1997, 2105
TscAI CASTG 6 cut(s) 731, 820, 1288, 1347, 1819, 2035
TseFI GTSAC 1 cut(s) 1283
TseI GCWGC 5 cut(s) 182, 1160, 1756, 2045, 2141
Tsp45I GTSAC 1 cut(s) 1283
TspRI CASTG 6 cut(s) 731, 820, 1288, 1347, 1819, 2035
VpaK11BI GGWCC 1 cut(s) 1509
VspI ATTAAT 1 cut(s) 1841
XapI RAATTY 6 cut(s) 144, 629, 647, 900, 1360, 1427
XceI RCATGY 2 cut(s) 609, 1746
XcmI CCANNNNNNNNNTGG 1 cut(s) 1375
XhoI CTCGAG 1 cut(s) 1137
XmiI GTMKAC 1 cut(s) 535
XspI CTAG 4 cut(s) 1467, 1554, 1653, 1875
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.