Prupe.5G218100_v2.0.a1

pre-rRNA-processing protein TSR1 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0010916
Physical Location & Seq
Forward (+)
17075212 .. 17081828
6617 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G218100.1

Sequence Viewer

Length: 2388 bp
ATGGGAGGCTCGCGAGCTCAAGTAAACAAGCCCCACAAGACGCGCTTTGCCTCCAAATCTTCGCGTAATCTCCACAAAACTTCAGATAAGAGTAGGATTGGTAAATCAGAGCACAATGTTGCCAAGGGAGCTCGGGCAGCTCGAGTTCAACGTAACAAGATGTTAAGAGAACAGAAGCGGGCAGCTCTTTTGAAAGAGAAGAGGGCTTCAAGTGGATCAGCAAGTGCTCCCCGTGTGATTGTTTTGTTCGGGCTTTCTGCTGATGTAAACCTAAATTCACTTGCCGAGGACCTTCTTTCTTTGTTATCTCCACAAGGTTATGATGCCACCTTGCCAACAGTTGCTTCTGTTGAATACAAACTGAGAACAACGGTATTGAAAGCACCTCATGGGGATCTGCTATCATGCTTGGAAATGGCCAAGGTTGCTGATCTCATTGCTTTTGTGGCTTCAGCGAGCTCTTCATGTGAAGGAAGCACATCTGACTACATTGACTCATTTGGAAGTCACTGTCTTTCTGTCTTTAGGTCCCTTGGTTTACCGAGCACTGCTGTGCTAATTCGTGATCTGCCTACTGACATGAAAAGAAGACATGATTCAAAGAAAACGTGTACTTCTAGTCTTGCTTCTGAATTTCCCGAGGATTGTAAATTTTATCCAGCTGACACAAAGGATGAGTTGCACAAGTTCATGTGGCTCTTTAAGGAGCAAAGGCTCTCAGTTCCTCACTGGCGAAGTCAACGGCCTTACCTGATTTCTCAGAAGGTTGATATGGTAGCAGATGATTTCAATTCGGGAAATTGTACCCTTCTCCTTACTGGATATCTGCGTGCTCGCAGTCTTTCTGTGAATCAACTGGTTCATGTTTCTGGTGTGGGAGATTTCCAGTTGTCCAAAATGGAAATTCTCAAGGATCCATTTCCTTTGAATGCAAGAAAAGAGCAGGATTTCATGGATTCAGATGAAGTGTGTGATGTAGAGGTCCTCCGTTCTTTGGTTCCCGATCCTATGAGGCAGGAGCTGTTACTAGTTGAGAATGTTCCCGATCCCCTGGCAGGTGAACAGACATGGCCAACAGAGGCAGAAATGGCTGAGGCTGAAAAAAGTCAGAAACAAAAAAAGAAGAAAAAGAGGACACTTCCTCGAGGCACTTCAGAATACCAGGCTGCTTGGATTGTGGATGGTACAGATGAAGAGGGATCAAGTACTGATGAGGATGAGGAAGCGGATGGTATGGTATTGGATGAGGGGGACATTGGTTATCCTGGTCAAGAGGGCACTAAGTATTCGGATCTCAGTGATGACCAAGCGTCTTTAAGCTTTGGGAACTCTGATGGAGAAACTGATGTTGATTCAGTAATGATGGAAGGTGAAAACTTGACCAAGGAACAGTTGGCGAATGAAATTCAAAAAATAAAGCAAGCACATGCTGATGATGAGGAATTTCCAGATGAAGTGGATACACCATTAGACATTCCAGCAAGAAAACGTTTTGCAAAGTATAGAGGCCTCAAGTCCTTTAGGACCTCTACATGGGATCCCAAAGAGTCTTTGCCTCTAGAGTATGCCAGAATCTTTGCATTTGATAATTTCAACAGAACACAGAAAAACGTCCTTGCTAAAGCTTTAGATATGGAGCAACAAAACAGGGATGACTGCGCCACTGCTAGCTCATATGCAAGGCTGTATATCAAAGATGTGCCAACTAGTGTTGCTTCTAAATTATGTAATCAGGCAAAGACAATGCCTGTTACAGCATGCGGTCTTTTGCAGCATGAGTCCAAGATGTCTGTACTACATTTCAGCGTAAAGAAGCATGACTCGTACAGTGCTCCTATCAAAGCCAAAGACGAATTAATATTTCATGTTGGGTTTCGCCAATTTATTGCTAGGCCAATATATTCTACTGACAACATGAATTCAGATAAGCACAAAATGGAGAGGTTTCTTCATGCAGGCCGTTTTTCCATGGCTTCAATTTATGCTCCGATCTCCTTTCCTCCTCTTCCTTTGATAGCTTTGAGGAGTTCTGAGGGAGCAGGCACTGCACCTGCAGTTGCTGCTGTTGGTACACTGAAAAGCATCGACCCTGACAGAATTATACTAAAGAAGATTACTTTAACTGGTTACCCTCAACGAGTATCAAAACTAAAAGCTTCTGTAAGGTATATGTTCCATAATCCAGAGGACGTGAAATGGTTCAAGCCTGTGGAAGTGTGGACCAAATGTGGTCGTCGGGGTCGCATCAAGGAGCCTCTTGGTACACACGGGGCATTGAAATGCATCTTCAATGGGGTCCTCCAGCAGCATGACACAGTATGCATGAGCTTGTACAAGCGTTCGTATCCAAAGTGGCCTGACCACCGGTTCCCCATTCTTGATGCTTGA

Protein Analysis

796

Amino Acids

88.9

Weight (kDa)

8.21

Isoelectric Point (pI)

43.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010916)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42440
fragaria_vesca FvH4_5g12620 FvH4_5g12620 FvH4_5g12620
malus_domestica MD06G1211900.v1.1 MD14G1222500.v1.1
prunus_persica Prupe.5G218100_v2.0.a1
pyrus_communis pycom14g18410 pycom14g18420
rosa_chinensis RchiOBHm_Chr7g0184701
rosa_laevigata RLG00000004958
rosa_multiflora Rmu_ssc0000289.1_g000022
rosa_roxburghii Rroxscaffold_3G00269420
rosa_rugosa Rorug06G0464600 Rorug06G0464600
rosa_samantha Rh7AG078400 Rh7BG068900 Rh7CG069700 Rh7DG069100
rosa_wichuraiana Rw7G005700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1046, 2059
AbsI CCTCGAGG 1 cut(s) 1143
Acc36I ACCTGC 2 cut(s) 1046, 2059
AccII CGCG 3 cut(s) 13, 43, 64
AciI CCGC 3 cut(s) 178, 1226, 1761
AclI AACGTT 1 cut(s) 1489
AcoI YGGCCR 2 cut(s) 417, 1070
AcsI RAATTY 7 cut(s) 274, 632, 650, 903, 1404, 1442, 1918
AcuI CTGAAG 3 cut(s) 66, 435, 1137
AfaI GTAC 9 cut(s) 613, 805, 1186, 1207, 1794, 1826, 2071, 2263, 2333
AfiI CCNNNNNNNGG 3 cut(s) 994, 1055, 1533
AflIII ACRYGT 1 cut(s) 608
AgeI ACCGGT 1 cut(s) 2364
AhdI GACNNNNNGTC 1 cut(s) 1309
AhlI ACTAGT 2 cut(s) 1027, 1706
AjiI CACGTC 1 cut(s) 2191
AjnI CCWGG 3 cut(s) 1050, 1161, 1264
AjuI GAANNNNNNNTTGG 2 cut(s) 328, 360
AleI CACNNNNGTG 1 cut(s) 551
Alw21I GWGCWC 8 cut(s) 19, 114, 133, 229, 461, 548, 835, 1834
AlwNI CAGNNNCTG 3 cut(s) 1021, 2045, 2060
Ama87I CYCGRG 4 cut(s) 132, 141, 638, 1143
AoxI GGCC 7 cut(s) 417, 743, 1070, 1507, 1892, 1957, 2354
ApeKI GCWGC 6 cut(s) 137, 182, 1166, 1771, 2060, 2305
ApoI RAATTY 7 cut(s) 274, 632, 650, 903, 1404, 1442, 1918
AseI ATTAAT 1 cut(s) 1856
AsiGI ACCGGT 1 cut(s) 2364
Asp700I GAANNNNTTC 1 cut(s) 2198
AspLEI GCGC 2 cut(s) 45, 1661
AspS9I GGNCC 6 cut(s) 289, 528, 982, 1524, 2220, 2296
AsuHPI GGTGA 2 cut(s) 1070, 1382
AsuNHI GCTAGC 1 cut(s) 1667
AvaI CYCGRG 4 cut(s) 132, 141, 638, 1143
AvaII GGWCC 6 cut(s) 289, 528, 982, 1524, 2220, 2296
BaeGI GKGCMC 1 cut(s) 1280
BalI TGGCCA 2 cut(s) 419, 1072
BamHI GGATCC 2 cut(s) 913, 1537
BanII GRGCYC 3 cut(s) 19, 133, 461
BbsI GAAGAC 1 cut(s) 595
Bbv12I GWGCWC 8 cut(s) 19, 114, 133, 229, 461, 548, 835, 1834
BbvCI CCTCAGC 1 cut(s) 1092
BbvI GCAGC 6 cut(s) 149, 194, 1153, 1783, 2047, 2317
BccI CCATC 4 cut(s) 1175, 1223, 1328, 1357
BceAI ACGGC 2 cut(s) 758, 1944
BciT130I CCWGG 3 cut(s) 1052, 1163, 1266
BciVI GTATCC 2 cut(s) 1453, 2355
BcuI ACTAGT 2 cut(s) 1027, 1706
BfaI CTAG 6 cut(s) 618, 1028, 1559, 1668, 1707, 1890
BfmI CTRYAG 1 cut(s) 2052
BfuAI ACCTGC 2 cut(s) 1046, 2059
BfuI GTATCC 2 cut(s) 1453, 2355
BisI GCNGC 6 cut(s) 138, 183, 1167, 1772, 2061, 2306
BlsI GCNGC 6 cut(s) 139, 184, 1168, 1773, 2062, 2307
BmcAI AGTACT 1 cut(s) 1207
Bme1390I CCNGG 3 cut(s) 1052, 1163, 1266
Bme18I GGWCC 6 cut(s) 289, 528, 982, 1524, 2220, 2296
BmeRI GACNNNNNGTC 1 cut(s) 1309
BmeT110I CYCGRG 4 cut(s) 132, 141, 638, 1143
BmgBI CACGTC 1 cut(s) 2191
BmgT120I GGNCC 6 cut(s) 289, 528, 982, 1524, 2220, 2296
BmiI GGNNCC 7 cut(s) 530, 915, 999, 1539, 2253, 2297, 2369
BmrFI CCNGG 3 cut(s) 1052, 1163, 1266
BmsI GCATC 5 cut(s) 313, 2091, 2253, 2292, 2371
BmtI GCTAGC 1 cut(s) 1671
BpiI GAAGAC 1 cut(s) 595
BpmI CTGGAG 1 cut(s) 2285
Bpu10I CCTNAGC 1 cut(s) 1092
BpuEI CTTGAG 2 cut(s) 893, 1496
BsaJI CCNNGG 8 cut(s) 123, 285, 420, 532, 639, 1050, 1383, 1968
BsaWI WCCGGW 1 cut(s) 2364
Bsc4I CCNNNNNNNGG 3 cut(s) 994, 1055, 1533
Bse118I RCCGGY 1 cut(s) 2364
Bse1I ACTGG 5 cut(s) 734, 823, 861, 886, 2128
Bse3DI GCAATG 1 cut(s) 435
BseBI CCWGG 3 cut(s) 1052, 1163, 1266
BseDI CCNNGG 8 cut(s) 123, 285, 420, 532, 639, 1050, 1383, 1968
BseGI GGATG 6 cut(s) 679, 1186, 1222, 1234, 1249, 1657
BseLI CCNNNNNNNGG 3 cut(s) 994, 1055, 1533
BseMI GCAATG 1 cut(s) 435
BseMII CTCAG 6 cut(s) 353, 732, 773, 1083, 1309, 2022
BseNI ACTGG 5 cut(s) 734, 823, 861, 886, 2128
BseRI GAGGAG 2 cut(s) 1992, 2038
BseSI GKGCMC 1 cut(s) 1280
BseXI GCAGC 6 cut(s) 149, 194, 1153, 1783, 2047, 2317
BsgI GTGCAG 1 cut(s) 2031
Bsh1236I CGCG 3 cut(s) 13, 43, 64
BshFI GGCC 7 cut(s) 419, 745, 1072, 1509, 1894, 1959, 2356
BshTI ACCGGT 1 cut(s) 2364
BsiHKAI GWGCWC 8 cut(s) 19, 114, 133, 229, 461, 548, 835, 1834
BsiHKCI CYCGRG 4 cut(s) 132, 141, 638, 1143
BsiSI CCGG 1 cut(s) 2365
BslFI GGGAC 2 cut(s) 514, 1265
BslI CCNNNNNNNGG 3 cut(s) 994, 1055, 1533
BsmFI GGGAC 2 cut(s) 514, 1265
BsmI GAATGC 1 cut(s) 934
BsnI GGCC 7 cut(s) 419, 745, 1072, 1509, 1894, 1959, 2356
BsoBI CYCGRG 4 cut(s) 132, 141, 638, 1143
Bsp1286I GDGCHC 9 cut(s) 19, 114, 133, 229, 461, 548, 835, 1280, 1834
Bsp1407I TGTACA 1 cut(s) 2331
Bsp19I CCATGG 1 cut(s) 1968
Bsp68I TCGCGA 1 cut(s) 13
BspACI CCGC 3 cut(s) 178, 1226, 1761
BspANI GGCC 7 cut(s) 419, 745, 1072, 1509, 1894, 1959, 2356
BspCNI CTCAG 6 cut(s) 354, 731, 772, 1084, 1308, 2023
BspFNI CGCG 3 cut(s) 13, 43, 64
BspLI GGNNCC 7 cut(s) 530, 915, 999, 1539, 2253, 2297, 2369
BspMAI CTGCAG 1 cut(s) 2056
BspMI ACCTGC 2 cut(s) 1046, 2059
BspOI GCTAGC 1 cut(s) 1671
BspQI GCTCTTC 1 cut(s) 466
BsrDI GCAATG 1 cut(s) 435
BsrFI RCCGGY 1 cut(s) 2364
BsrGI TGTACA 1 cut(s) 2331
BsrI ACTGG 5 cut(s) 734, 823, 861, 886, 2128
BssAI RCCGGY 1 cut(s) 2364
BssECI CCNNGG 8 cut(s) 123, 285, 420, 532, 639, 1050, 1383, 1968
BssT1I CCWWGG 5 cut(s) 123, 420, 532, 1383, 1968
Bst2UI CCWGG 3 cut(s) 1052, 1163, 1266
Bst4CI ACNGT 6 cut(s) 340, 373, 512, 1392, 1829, 2317
Bst6I CTCTTC 4 cut(s) 194, 466, 1188, 2010
BstAPI GCANNNNNTGC 2 cut(s) 2045, 2060
BstAUI TGTACA 1 cut(s) 2331
BstDEI CTNAG 7 cut(s) 362, 718, 759, 1092, 1281, 1295, 2031
BstDSI CCRYGG 1 cut(s) 1968
BstEII GGTNACC 1 cut(s) 2126
BstF5I GGATG 6 cut(s) 679, 1186, 1222, 1234, 1249, 1657
BstFNI CGCG 3 cut(s) 13, 43, 64
BstHHI GCGC 2 cut(s) 45, 1661
BstMWI GCNNNNNNNGC 7 cut(s) 128, 137, 425, 446, 1088, 2045, 2060
BstNI CCWGG 3 cut(s) 1052, 1163, 1266
BstNSI RCATGY 2 cut(s) 1430, 1761
BstPI GGTNACC 1 cut(s) 2126
BstSCI CCNGG 3 cut(s) 1050, 1161, 1264
BstSFI CTRYAG 1 cut(s) 2052
BstSLI GKGCMC 1 cut(s) 1280
BstUI CGCG 3 cut(s) 13, 43, 64
BstV1I GCAGC 6 cut(s) 149, 194, 1153, 1783, 2047, 2317
BstV2I GAAGAC 1 cut(s) 595
BstX2I RGATCY 4 cut(s) 394, 913, 1291, 1537
BstYI RGATCY 4 cut(s) 394, 913, 1291, 1537
BsuI GTATCC 2 cut(s) 1453, 2355
BsuRI GGCC 7 cut(s) 419, 745, 1072, 1509, 1894, 1959, 2356
BtgI CCRYGG 1 cut(s) 1968
BtrI CACGTC 1 cut(s) 2191
BtsCI GGATG 6 cut(s) 679, 1186, 1222, 1234, 1249, 1657
BtsI GCAGTG 3 cut(s) 546, 1662, 2043
BtsIMutI CAGTG 8 cut(s) 508, 546, 727, 1303, 1662, 1834, 2043, 2072
BtuMI TCGCGA 1 cut(s) 13
BveI ACCTGC 2 cut(s) 1046, 2059
CaiI CAGNNNCTG 3 cut(s) 1021, 2045, 2060
CfoI GCGC 2 cut(s) 45, 1661
Cfr10I RCCGGY 1 cut(s) 2364
Cfr13I GGNCC 6 cut(s) 289, 528, 982, 1524, 2220, 2296
CseI GACGC 2 cut(s) 49, 1299
Csp6I GTAC 9 cut(s) 612, 804, 1185, 1206, 1793, 1825, 2070, 2262, 2332
CspAI ACCGGT 1 cut(s) 2364
CviQI GTAC 9 cut(s) 612, 804, 1185, 1206, 1793, 1825, 2070, 2262, 2332
DdeI CTNAG 7 cut(s) 362, 718, 759, 1092, 1281, 1295, 2031
DriI GACNNNNNGTC 1 cut(s) 1309
EaeI YGGCCR 2 cut(s) 417, 1070
Eam1104I CTCTTC 4 cut(s) 194, 466, 1188, 2010
Eam1105I GACNNNNNGTC 1 cut(s) 1309
EarI CTCTTC 4 cut(s) 194, 466, 1188, 2010
Ecl136II GAGCTC 3 cut(s) 17, 131, 459
Eco130I CCWWGG 5 cut(s) 123, 420, 532, 1383, 1968
Eco147I AGGCCT 1 cut(s) 1509
Eco24I GRGCYC 3 cut(s) 19, 133, 461
Eco32I GATATC 1 cut(s) 824
Eco47I GGWCC 6 cut(s) 289, 528, 982, 1524, 2220, 2296
Eco53kI GAGCTC 3 cut(s) 17, 131, 459
Eco57I CTGAAG 3 cut(s) 66, 435, 1137
Eco88I CYCGRG 4 cut(s) 132, 141, 638, 1143
Eco91I GGTNACC 1 cut(s) 2126
EcoICRI GAGCTC 3 cut(s) 17, 131, 459
EcoO109I RGGNCCY 5 cut(s) 289, 528, 982, 1524, 2296
EcoO65I GGTNACC 1 cut(s) 2126
EcoRI GAATTC 1 cut(s) 1918
EcoRII CCWGG 3 cut(s) 1050, 1161, 1264
EcoRV GATATC 1 cut(s) 824
EcoT14I CCWWGG 5 cut(s) 123, 420, 532, 1383, 1968
EcoT22I ATGCAT 2 cut(s) 2285, 2324
EcoT38I GRGCYC 3 cut(s) 19, 133, 461
ErhI CCWWGG 5 cut(s) 123, 420, 532, 1383, 1968
FalI AAGNNNNNCTT 2 cut(s) 29, 61
FaqI GGGAC 2 cut(s) 514, 1265
FauI CCCGC 1 cut(s) 171
FauNDI CATATG 1 cut(s) 1675
Fnu4HI GCNGC 6 cut(s) 138, 183, 1167, 1772, 2061, 2306
FokI GGATG 6 cut(s) 686, 1193, 1229, 1241, 1256, 1664
FriOI GRGCYC 3 cut(s) 19, 133, 461
Fsp4HI GCNGC 6 cut(s) 138, 183, 1167, 1772, 2061, 2306
FspBI CTAG 6 cut(s) 618, 1028, 1559, 1668, 1707, 1890
GlaI GCGC 2 cut(s) 44, 1660
GluI GCNGC 6 cut(s) 138, 183, 1167, 1772, 2061, 2306
GsuI CTGGAG 1 cut(s) 2285
HaeIII GGCC 7 cut(s) 419, 745, 1072, 1509, 1894, 1959, 2356
HapII CCGG 1 cut(s) 2365
HgaI GACGC 2 cut(s) 49, 1299
HhaI GCGC 2 cut(s) 45, 1661
Hin6I GCGC 2 cut(s) 43, 1659
HinP1I GCGC 2 cut(s) 43, 1659
HincII GTYRAC 1 cut(s) 740
HindII GTYRAC 1 cut(s) 740
HindIII AAGCTT 3 cut(s) 1318, 1623, 2154
HinfI GANTC 9 cut(s) 494, 596, 850, 956, 1352, 1547, 1572, 1778, 1820
HpaII CCGG 1 cut(s) 2365
HphI GGTGA 2 cut(s) 1070, 1382
Hpy166II GTNNAC 9 cut(s) 25, 268, 539, 612, 740, 1061, 2072, 2220, 2264
Hpy8I GTNNAC 9 cut(s) 25, 268, 539, 612, 740, 1061, 2072, 2220, 2264
Hpy99I CGWCG 1 cut(s) 2238
HpyAV CCTTC 5 cut(s) 302, 464, 757, 818, 1361
HpyCH4III ACNGT 6 cut(s) 340, 373, 512, 1392, 1829, 2317
HpyCH4IV ACGT 5 cut(s) 151, 608, 1489, 1611, 2190
HpyF10VI GCNNNNNNNGC 7 cut(s) 128, 137, 425, 446, 1088, 2045, 2060
HpyF3I CTNAG 7 cut(s) 362, 718, 759, 1092, 1281, 1295, 2031
HpySE526I ACGT 5 cut(s) 151, 608, 1489, 1611, 2190
HspAI GCGC 2 cut(s) 43, 1659
LguI GCTCTTC 1 cut(s) 466
LmnI GCTCC 9 cut(s) 128, 232, 706, 1018, 1636, 1837, 1990, 2036, 2251
Lsp1109I GCAGC 6 cut(s) 149, 194, 1153, 1783, 2047, 2317
LweI GCATC 5 cut(s) 313, 2091, 2253, 2292, 2371
MaeI CTAG 6 cut(s) 618, 1028, 1559, 1668, 1707, 1890
MaeII ACGT 5 cut(s) 151, 608, 1489, 1611, 2190
MaeIII GTNAC 5 cut(s) 152, 506, 1023, 1750, 2126
MflI RGATCY 4 cut(s) 394, 913, 1291, 1537
MhlI GDGCHC 9 cut(s) 19, 114, 133, 229, 461, 548, 835, 1280, 1834
MlsI TGGCCA 2 cut(s) 419, 1072
MluNI TGGCCA 2 cut(s) 419, 1072
MlyI GAGTC 4 cut(s) 488, 1556, 1787, 1814
Mox20I TGGCCA 2 cut(s) 419, 1072
Mph1103I ATGCAT 2 cut(s) 2285, 2324
MroXI GAANNNNTTC 1 cut(s) 2198
MscI TGGCCA 2 cut(s) 419, 1072
MseI TTAA 5 cut(s) 164, 702, 1316, 1856, 2120
MslI CAYNNNNRTG 3 cut(s) 551, 1431, 2278
Msp20I TGGCCA 2 cut(s) 419, 1072
MspA1I CMGCKG 1 cut(s) 662
MspI CCGG 1 cut(s) 2365
MspR9I CCNGG 3 cut(s) 1052, 1163, 1266
Mva1269I GAATGC 1 cut(s) 934
MvaI CCWGG 3 cut(s) 1052, 1163, 1266
MvnI CGCG 3 cut(s) 13, 43, 64
MwoI GCNNNNNNNGC 7 cut(s) 128, 137, 425, 446, 1088, 2045, 2060
NcoI CCATGG 1 cut(s) 1968
NdeI CATATG 1 cut(s) 1675
NheI GCTAGC 1 cut(s) 1667
NlaIV GGNNCC 7 cut(s) 530, 915, 999, 1539, 2253, 2297, 2369
NmeAIII GCCGAG 1 cut(s) 310
NmuCI GTSAC 1 cut(s) 506
NruI TCGCGA 1 cut(s) 13
NsiI ATGCAT 2 cut(s) 2285, 2324
NspI RCATGY 2 cut(s) 1430, 1761
OliI CACNNNNGTG 1 cut(s) 551
PaeI GCATGC 1 cut(s) 1761
PaeR7I CTCGAG 2 cut(s) 141, 1143
PaqCI CACCTGC 2 cut(s) 1046, 2059
PceI AGGCCT 1 cut(s) 1509
PciSI GCTCTTC 1 cut(s) 466
PcsI WCGNNNNNNNCGW 2 cut(s) 139, 148
PctI GAATGC 1 cut(s) 934
PdmI GAANNNNTTC 1 cut(s) 2198
PfeI GAWTC 5 cut(s) 596, 850, 956, 1352, 1572
PinAI ACCGGT 1 cut(s) 2364
PkrI GCNGC 6 cut(s) 139, 184, 1168, 1773, 2062, 2307
PleI GAGTC 4 cut(s) 488, 1555, 1786, 1814
PpsI GAGTC 4 cut(s) 488, 1555, 1786, 1814
PpuMI RGGWCCY 5 cut(s) 289, 528, 982, 1524, 2296
PshBI ATTAAT 1 cut(s) 1856
Psp124BI GAGCTC 3 cut(s) 19, 133, 461
Psp1406I AACGTT 1 cut(s) 1489
Psp5II RGGWCCY 5 cut(s) 289, 528, 982, 1524, 2296
Psp6I CCWGG 3 cut(s) 1050, 1161, 1264
PspEI GGTNACC 1 cut(s) 2126
PspGI CCWGG 3 cut(s) 1050, 1161, 1264
PspN4I GGNNCC 7 cut(s) 530, 915, 999, 1539, 2253, 2297, 2369
PspPI GGNCC 6 cut(s) 289, 528, 982, 1524, 2220, 2296
PspPPI RGGWCCY 5 cut(s) 289, 528, 982, 1524, 2296
PspXI VCTCGAGB 2 cut(s) 141, 1143
PstI CTGCAG 1 cut(s) 2056
PstNI CAGNNNCTG 3 cut(s) 1021, 2045, 2060
PsuI RGATCY 4 cut(s) 394, 913, 1291, 1537
PvuII CAGCTG 1 cut(s) 662
RruI TCGCGA 1 cut(s) 13
RsaI GTAC 9 cut(s) 613, 805, 1186, 1207, 1794, 1826, 2071, 2263, 2333
RsaNI GTAC 9 cut(s) 612, 804, 1185, 1206, 1793, 1825, 2070, 2262, 2332
RseI CAYNNNNRTG 3 cut(s) 551, 1431, 2278
SacI GAGCTC 3 cut(s) 19, 133, 461
SapI GCTCTTC 1 cut(s) 466
SaqAI TTAA 5 cut(s) 164, 702, 1316, 1856, 2120
SatI GCNGC 6 cut(s) 138, 183, 1167, 1772, 2061, 2306
Sau96I GGNCC 6 cut(s) 289, 528, 982, 1524, 2220, 2296
ScaI AGTACT 1 cut(s) 1207
SchI GAGTC 4 cut(s) 488, 1556, 1787, 1814
ScrFI CCNGG 3 cut(s) 1052, 1163, 1266
SduI GDGCHC 9 cut(s) 19, 114, 133, 229, 461, 548, 835, 1280, 1834
SfaNI GCATC 5 cut(s) 313, 2091, 2253, 2292, 2371
SfcI CTRYAG 1 cut(s) 2052
Sfr274I CTCGAG 2 cut(s) 141, 1143
SinI GGWCC 6 cut(s) 289, 528, 982, 1524, 2220, 2296
SlaI CTCGAG 2 cut(s) 141, 1143
SmiMI CAYNNNNRTG 3 cut(s) 551, 1431, 2278
SmlI CTYRAG 5 cut(s) 18, 141, 908, 1143, 1511
SmoI CTYRAG 5 cut(s) 18, 141, 908, 1143, 1511
SpeI ACTAGT 2 cut(s) 1027, 1706
SphI GCATGC 1 cut(s) 1761
SseBI AGGCCT 1 cut(s) 1509
SsiI CCGC 3 cut(s) 178, 1226, 1761
SspI AATATT 1 cut(s) 1860
SspMI CTAG 6 cut(s) 618, 1028, 1559, 1668, 1707, 1890
SstI GAGCTC 3 cut(s) 19, 133, 461
StuI AGGCCT 1 cut(s) 1509
StyD4I CCNGG 3 cut(s) 1050, 1161, 1264
StyI CCWWGG 5 cut(s) 123, 420, 532, 1383, 1968
TaaI ACNGT 6 cut(s) 340, 373, 512, 1392, 1829, 2317
TaiI ACGT 5 cut(s) 154, 611, 1492, 1614, 2193
TaqI TCGA 3 cut(s) 142, 1144, 2085
TatI WGTACW 4 cut(s) 611, 1205, 1792, 2331
TfiI GAWTC 5 cut(s) 596, 850, 956, 1352, 1572
Tru1I TTAA 5 cut(s) 164, 702, 1316, 1856, 2120
Tru9I TTAA 5 cut(s) 164, 702, 1316, 1856, 2120
TscAI CASTG 8 cut(s) 515, 553, 734, 1303, 1669, 1834, 2050, 2079
TseFI GTSAC 1 cut(s) 506
TseI GCWGC 6 cut(s) 137, 182, 1166, 1771, 2060, 2305
Tsp45I GTSAC 1 cut(s) 506
TspGWI ACGGA 1 cut(s) 977
TspRI CASTG 8 cut(s) 515, 553, 734, 1303, 1669, 1834, 2050, 2079
VpaK11BI GGWCC 6 cut(s) 289, 528, 982, 1524, 2220, 2296
VspI ATTAAT 1 cut(s) 1856
XapI RAATTY 7 cut(s) 274, 632, 650, 903, 1404, 1442, 1918
XbaI TCTAGA 1 cut(s) 1558
XceI RCATGY 2 cut(s) 1430, 1761
XcmI CCANNNNNNNNNTGG 1 cut(s) 1390
XhoI CTCGAG 2 cut(s) 141, 1143
XmnI GAANNNNTTC 1 cut(s) 2198
XspI CTAG 6 cut(s) 618, 1028, 1559, 1668, 1707, 1890
ZrmI AGTACT 1 cut(s) 1207
Zsp2I ATGCAT 2 cut(s) 2285, 2324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.