Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0010916

Physical Location & Seq

Genomic Coordinates Forward (+)

34457145 .. 34463281

Gene Structure 6137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1211900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2376 bp

ATGGGAGGCTCGCGAGCTCAAGTAAACAAGCAGCACAAGACGCGCTTCGCTTCAAAGTCATCTCGCAATCTCCACAAAACTTCAGAGAAGAGTAGGATCGGTAAAACTGAGCGCAATGTTGCCAAGGGAGCTCGGGCGGCTCGCCTTCAGCGGAGCAAGATGCTTCGAGAGCAGAAGCGAGCGGCTCTTTTGAAAGAGAAGAGGGCTTCGAGTGGATCAGCAAGTCCTCCCCGTGTCATTGTTTTGTTCGGGCTTTCTGCTGATGCGAACCTAAATTCACTTGCTGAGGATCTTTTATCCTTGTTATCTCCACAAGGTTATGAACCCGCATTTCCAACAGTTGCTTCTCCTGAGTACAAGCTGAGAACGACGGTACTGAAAGCACCTCATGGCGATCTTCCAACATGTATGGAAATGGCCAAGGTTGCTGATCTCGTCGCCTTTGTGGCATCTGCGAGCTCTTCATGTGAAGGAAGCACGTCTGACTACATTGACTCGTTTGGAAGTCAATATCTTTCTGTTTTTAGGTCCCTTGGTTTACCAAGCACTGTGGTGCTAATTCGTGATCTACCTGCTGACATGAAAAGAAGACATGATTCAAAGAAAATATGTACGTCTAGTCTCGCTTCTGAATTTCCTGAGGATTGTAAATATTATCCAGCTGATACAAAGGATGAGTTGCACAAGTTCATGTGGCTCTTTAAGGAACAAAGGCTTTCAATTCCTCACTGGCGAAGTCAACGGGCTTACCTGATGGCCCAGAAGGTTGATATGGTAGCAGATGATTCCAATTTGGGAAAATGCACCCTTCTCCTTACTGGATATATACGTGCTCGCAGTCTTTCAGTGAACCAACTGGTTCATGTTTCTGGTGCGGGGGATTTCCAGCTGTCCAAAATGGAAATTCTCAAGGATCCATTTCCTTTGAATGCAAGAAAAGAGCAAGATGCCATGGACTCGGATGAAGTGGGTGATGCAGAGGTCCTTCGTTCTTTGGTTCCCGATCCTTTGAAGCAGGAGGCTTTACTAGTTGAGAATGTTCCTGATCCCCTTGCAGGTGAACAGACATGGCCAACAGAAGCAGAAATGGCTGAGGCTGAACAAAGTCAGAAGCAAAAAAAGAAGAAAAAGAGGGCTCTTCCTCGAGGCACTTCAGAATACCAGGCTGCTTGGATTGTGGATGATACAGATGAAGAGGAGTCAAGTACTGATGATGAAGCTGATGGTATGATATTGGATGAGAGGGACGGTGGTTATCCTGGTCAAGATGACAATAATTATTCAGATGAGAGCGACGATCAAGCTTCAATAAGGGACTCTGATGGAGAAACTGATGTTGATTCAGTGATGATGGAAGGTGAAAACTTGACCAAGGAACAGTTGGAGAATGAGATTCGAAAAATAAAGCAAGCACATGCTGATGATGAGGAATTTCCGGATGAAGTCGATACACCATTAGATATTCCAGCAAGAAAACGTTTTGCAAAGTATAGGGGACTGAAGTCCTTCAGGACCTCTTCATGGGATCCCAAAGAGTCTTTGCCTGCAGAGTACGCCAGAATCTTTGCATTCGATAATTTTAACAGAACACAGAAAAATGTTCTTGCTAAAGCTTTAGGAATGGACCAAGAAAACAGCGATGACTGCGCCACAGCGGGCTCATATGCAAGGCTGTATATCACAGAAGTGCCAGCTAGCGTTGCTTCTAAATTATGTATGCATGCGAAGACAATTCCTGTTGTAGCATGTGGTCTTTTGCAGCATGAGTCCAAGATGTCTGTACTTCATTTCAGCATAAAGAAGCACGACACGTTCAGTGCTCCTATCAAATCCAAGGACGAATTAATATTTCATGTTGGCTTTCGCCAATTCATTGCCAGGCCAATATATTCAACTGACAACATGAACTCGAACAAGCATAAAATGGAGAGGTTTCTACATCCAGGACGTTTTTCCATGGCTTCTATTTATGCCCCAATCTCTTTTCCTCCACTTCCTTTGATAGCTTTGAAGAGTTCTGAAGGGGTAGCCGCTCCACCTACAGTAGCTGCTGTTGGTGCACTGAAATGCATTGACCCTGACAGAATTATACTAAAGAAGATTACTTTAACCGGTTACCCTCAACGAGTATCAAAACTGAAAGCTTCTGTAAGATACATGTTCCATAACCCAGAGGACGTTAAATGGTTCAAGCCTGTTGAAGTATGGACCAAATGTGGTCGTCGTGGTCGCATCAAGGAGCCTCTTGGTACACACGGGGCATTGAAATGCATCTTCAATGGGGTCCTCCAGCAGAGTGACACCGTATGCATGAGTTTGTACAAGCGTGCGTATCCCAAGTGGCCGGAACACCGCTTCCCAATTCTCGATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AARP2CN RIBIOP_C

Protein Analysis

792

Amino Acids

88.46

Weight (kDa)

7.85

Isoelectric Point (pI)

47.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AARP2CN	PF08142	242 - 306	2.5e-21	AARP2CN (NUC121) domain
RIBIOP_C	PF04950	482 - 779	2.9e-112	40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010916)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42440
fragaria_vesca	FvH4_5g12620 FvH4_5g12620 FvH4_5g12620
malus_domestica	MD06G1211900.v1.1 MD14G1222500.v1.1
prunus_persica	Prupe.5G218100_v2.0.a1
pyrus_communis	pycom14g18410 pycom14g18420
rosa_chinensis	RchiOBHm_Chr7g0184701
rosa_laevigata	RLG00000004958
rosa_multiflora	Rmu_ssc0000289.1_g000022
rosa_roxburghii	Rroxscaffold_3G00269420
rosa_rugosa	Rorug06G0464600 Rorug06G0464600
rosa_samantha	Rh7AG078400 Rh7BG068900 Rh7CG069700 Rh7DG069100
rosa_wichuraiana	Rw7G005700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1046
AbsI	CCTCGAGG	1 cut(s)	1143
Acc36I	ACCTGC	2 cut(s)	580, 1046
AccBSI	CCGCTC	2 cut(s)	182, 2033
AccII	CGCG	2 cut(s)	13, 43
AccIII	TCCGGA	1 cut(s)	1435
AciI	CCGC	8 cut(s)	137, 151, 182, 327, 875, 1655, 2031, 2353
AclI	AACGTT	1 cut(s)	1477
AclWI	GGATC	9 cut(s)	104, 223, 297, 908, 921, 998, 1040, 1520, 1533
AcoI	YGGCCR	3 cut(s)	417, 1070, 2342
AcsI	RAATTY	4 cut(s)	274, 632, 903, 1430
AcuI	CTGAAG	6 cut(s)	66, 131, 1137, 1492, 1520, 2040
AfaI	GTAC	8 cut(s)	356, 375, 613, 1207, 1553, 1782, 2251, 2321
AfiI	CCNNNNNNNGG	2 cut(s)	1055, 1521
AflIII	ACRYGT	3 cut(s)	404, 1809, 2157
AgeI	ACCGGT	1 cut(s)	2111
AhlI	ACTAGT	1 cut(s)	1027
AjiI	CACGTC	1 cut(s)	480
AjnI	CCWGG	4 cut(s)	1161, 1258, 1877, 1942
AjuI	GAANNNNNNNTTGG	2 cut(s)	328, 360
AleI	CACNNNNGTG	2 cut(s)	551, 1685
AloI	GAACNNNNNNTCC	2 cut(s)	2340, 2372
Alw21I	GWGCWC	6 cut(s)	19, 133, 461, 835, 1822, 2062
Alw26I	GTCTC	1 cut(s)	626
Alw44I	GTGCAC	1 cut(s)	2058
AlwI	GGATC	9 cut(s)	104, 223, 297, 908, 921, 998, 1040, 1520, 1533
AlwNI	CAGNNNCTG	1 cut(s)	2048
Ama87I	CYCGRG	2 cut(s)	132, 1143
Aor13HI	TCCGGA	1 cut(s)	1435
AoxI	GGCC	5 cut(s)	417, 756, 1070, 1880, 2342
ApaLI	GTGCAC	1 cut(s)	2058
ApeKI	GCWGC	4 cut(s)	31, 1166, 1759, 2048
ApoI	RAATTY	4 cut(s)	274, 632, 903, 1430
AseI	ATTAAT	1 cut(s)	1844
AsiGI	ACCGGT	1 cut(s)	2111
Asp700I	GAANNNNTTC	1 cut(s)	1505
AspLEI	GCGC	3 cut(s)	45, 114, 1649
AspS9I	GGNCC	7 cut(s)	528, 757, 982, 1512, 1624, 2208, 2284
AsuHPI	GGTGA	3 cut(s)	983, 1070, 1370
AsuII	TTCGAA	1 cut(s)	1396
AsuNHI	GCTAGC	1 cut(s)	1694
AvaI	CYCGRG	2 cut(s)	132, 1143
AvaII	GGWCC	6 cut(s)	528, 982, 1512, 1624, 2208, 2284
AxyI	CCTNAGG	1 cut(s)	639
BaeGI	GKGCMC	1 cut(s)	2062
BalI	TGGCCA	2 cut(s)	419, 1072
BamHI	GGATCC	2 cut(s)	913, 1525
BanII	GRGCYC	5 cut(s)	19, 133, 461, 1138, 1661
BbsI	GAAGAC	2 cut(s)	595, 1733
Bbv12I	GWGCWC	6 cut(s)	19, 133, 461, 835, 1822, 2062
BbvCI	CCTCAGC	2 cut(s)	285, 1092
BbvI	GCAGC	4 cut(s)	43, 1153, 1771, 2035
BccI	CCATC	4 cut(s)	748, 1217, 1316, 1345
BciT130I	CCWGG	4 cut(s)	1163, 1260, 1879, 1944
BciVI	GTATCC	1 cut(s)	2343
BcoDI	GTCTC	1 cut(s)	626
BcuI	ACTAGT	1 cut(s)	1027
BfaI	CTAG	3 cut(s)	618, 1028, 1695
BfmI	CTRYAG	2 cut(s)	1545, 2040
BfuAI	ACCTGC	2 cut(s)	580, 1046
BfuI	GTATCC	1 cut(s)	2343
BglI	GCCNNNNNGGC	1 cut(s)	446
BisI	GCNGC	7 cut(s)	32, 138, 183, 1167, 1760, 2031, 2049
BlsI	GCNGC	7 cut(s)	33, 139, 184, 1168, 1761, 2032, 2050
BmcAI	AGTACT	1 cut(s)	1207
Bme1390I	CCNGG	4 cut(s)	1163, 1260, 1879, 1944
Bme18I	GGWCC	6 cut(s)	528, 982, 1512, 1624, 2208, 2284
BmeT110I	CYCGRG	2 cut(s)	132, 1143
BmgBI	CACGTC	1 cut(s)	480
BmgT120I	GGNCC	7 cut(s)	528, 757, 982, 1512, 1624, 2208, 2284
BmiI	GGNNCC	6 cut(s)	530, 915, 999, 1527, 2241, 2285
BmrFI	CCNGG	4 cut(s)	1163, 1260, 1879, 1944
BmsI	GCATC	8 cut(s)	150, 253, 458, 937, 964, 2241, 2280, 2359
BmtI	GCTAGC	1 cut(s)	1698
BoxI	GACNNNNGTC	1 cut(s)	1501
BpiI	GAAGAC	2 cut(s)	595, 1733
BpmI	CTGGAG	1 cut(s)	2273
Bpu10I	CCTNAGC	2 cut(s)	285, 1092
Bpu14I	TTCGAA	1 cut(s)	1396
BpuEI	CTTGAG	1 cut(s)	893
BsaAI	YACGTR	1 cut(s)	830
BsaJI	CCNNGG	7 cut(s)	123, 420, 532, 951, 1371, 1833, 1956
BsaWI	WCCGGW	2 cut(s)	1435, 2111
Bsc4I	CCNNNNNNNGG	2 cut(s)	1055, 1521
Bse118I	RCCGGY	1 cut(s)	2111
Bse1I	ACTGG	3 cut(s)	734, 823, 861
Bse21I	CCTNAGG	1 cut(s)	639
Bse3DI	GCAATG	2 cut(s)	121, 1872
BseAI	TCCGGA	1 cut(s)	1435
BseBI	CCWGG	4 cut(s)	1163, 1260, 1879, 1944
BseDI	CCNNGG	7 cut(s)	123, 420, 532, 951, 1371, 1833, 1956
BseGI	GGATG	6 cut(s)	679, 967, 1186, 1243, 1444, 1939
BseLI	CCNNNNNNNGG	2 cut(s)	1055, 1521
BseMI	GCAATG	2 cut(s)	121, 1872
BseMII	CTCAG	6 cut(s)	99, 276, 342, 353, 630, 1083
BseNI	ACTGG	3 cut(s)	734, 823, 861
BseRI	GAGGAG	1 cut(s)	1211
BseSI	GKGCMC	1 cut(s)	2062
BseXI	GCAGC	4 cut(s)	43, 1153, 1771, 2035
Bsh1236I	CGCG	2 cut(s)	13, 43
BshFI	GGCC	5 cut(s)	419, 758, 1072, 1882, 2344
BshTI	ACCGGT	1 cut(s)	2111
BsiHKAI	GWGCWC	6 cut(s)	19, 133, 461, 835, 1822, 2062
BsiHKCI	CYCGRG	2 cut(s)	132, 1143
BsiSI	CCGG	3 cut(s)	1436, 2112, 2345
BslFI	GGGAC	4 cut(s)	514, 1259, 1328, 1509
BslI	CCNNNNNNNGG	2 cut(s)	1055, 1521
BsmAI	GTCTC	1 cut(s)	626
BsmFI	GGGAC	4 cut(s)	514, 1259, 1328, 1509
BsmI	GAATGC	2 cut(s)	934, 1568
BsnI	GGCC	5 cut(s)	419, 758, 1072, 1882, 2344
BsoBI	CYCGRG	2 cut(s)	132, 1143
Bsp119I	TTCGAA	1 cut(s)	1396
Bsp1286I	GDGCHC	8 cut(s)	19, 133, 461, 835, 1138, 1661, 1822, 2062
Bsp13I	TCCGGA	1 cut(s)	1435
Bsp1407I	TGTACA	1 cut(s)	2319
Bsp19I	CCATGG	2 cut(s)	951, 1956
Bsp68I	TCGCGA	1 cut(s)	13
BspACI	CCGC	8 cut(s)	137, 151, 182, 327, 875, 1655, 2031, 2353
BspANI	GGCC	5 cut(s)	419, 758, 1072, 1882, 2344
BspCNI	CTCAG	6 cut(s)	100, 277, 343, 354, 631, 1084
BspEI	TCCGGA	1 cut(s)	1435
BspFNI	CGCG	2 cut(s)	13, 43
BspLI	GGNNCC	6 cut(s)	530, 915, 999, 1527, 2241, 2285
BspMAI	CTGCAG	1 cut(s)	1549
BspMI	ACCTGC	2 cut(s)	580, 1046
BspOI	GCTAGC	1 cut(s)	1698
BspPI	GGATC	9 cut(s)	104, 223, 297, 908, 921, 998, 1040, 1520, 1533
BspQI	GCTCTTC	2 cut(s)	466, 1143
BspT104I	TTCGAA	1 cut(s)	1396
BsrBI	CCGCTC	2 cut(s)	182, 2033
BsrDI	GCAATG	2 cut(s)	121, 1872
BsrFI	RCCGGY	1 cut(s)	2111
BsrGI	TGTACA	1 cut(s)	2319
BsrI	ACTGG	3 cut(s)	734, 823, 861
BssAI	RCCGGY	1 cut(s)	2111
BssECI	CCNNGG	7 cut(s)	123, 420, 532, 951, 1371, 1833, 1956
BssT1I	CCWWGG	7 cut(s)	123, 420, 532, 951, 1371, 1833, 1956
Bst2UI	CCWGG	4 cut(s)	1163, 1260, 1879, 1944
Bst4CI	ACNGT	7 cut(s)	340, 373, 550, 1250, 1380, 2044, 2305
Bst6I	CTCTTC	7 cut(s)	83, 194, 466, 1143, 1188, 1522, 2006
BstAUI	TGTACA	1 cut(s)	2319
BstBAI	YACGTR	1 cut(s)	830
BstBI	TTCGAA	1 cut(s)	1396
BstDEI	CTNAG	6 cut(s)	108, 285, 351, 362, 639, 1092
BstDSI	CCRYGG	2 cut(s)	951, 1956
BstEII	GGTNACC	1 cut(s)	2114
BstF5I	GGATG	6 cut(s)	679, 967, 1186, 1243, 1444, 1939
BstFNI	CGCG	2 cut(s)	13, 43
BstHHI	GCGC	3 cut(s)	45, 114, 1649
BstMAI	GTCTC	1 cut(s)	626
BstNI	CCWGG	4 cut(s)	1163, 1260, 1879, 1944
BstNSI	RCATGY	5 cut(s)	408, 1418, 1724, 1749, 2161
BstPAI	GACNNNNGTC	1 cut(s)	1501
BstPI	GGTNACC	1 cut(s)	2114
BstSCI	CCNGG	4 cut(s)	1161, 1258, 1877, 1942
BstSFI	CTRYAG	2 cut(s)	1545, 2040
BstSLI	GKGCMC	1 cut(s)	2062
BstUI	CGCG	2 cut(s)	13, 43
BstV1I	GCAGC	4 cut(s)	43, 1153, 1771, 2035
BstV2I	GAAGAC	2 cut(s)	595, 1733
BstX2I	RGATCY	3 cut(s)	289, 913, 1525
BstYI	RGATCY	3 cut(s)	289, 913, 1525
Bsu36I	CCTNAGG	1 cut(s)	639
BsuI	GTATCC	1 cut(s)	2343
BsuRI	GGCC	5 cut(s)	419, 758, 1072, 1882, 2344
BtgI	CCRYGG	2 cut(s)	951, 1956
BtgZI	GCGATG	1 cut(s)	1653
BtrI	CACGTC	1 cut(s)	480
BtsCI	GGATG	6 cut(s)	679, 967, 1186, 1243, 1444, 1939
BtsIMutI	CAGTG	6 cut(s)	546, 727, 852, 1350, 1822, 2060
BtuMI	TCGCGA	1 cut(s)	13
BveI	ACCTGC	2 cut(s)	580, 1046
CaiI	CAGNNNCTG	1 cut(s)	2048
CfoI	GCGC	3 cut(s)	45, 114, 1649
Cfr10I	RCCGGY	1 cut(s)	2111
Cfr13I	GGNCC	7 cut(s)	528, 757, 982, 1512, 1624, 2208, 2284
CseI	GACGC	1 cut(s)	49
Csp6I	GTAC	8 cut(s)	355, 374, 612, 1206, 1552, 1781, 2250, 2320
CspAI	ACCGGT	1 cut(s)	2111
CspCI	CAANNNNNGTGG	4 cut(s)	531, 566, 1980, 2015
CviQI	GTAC	8 cut(s)	355, 374, 612, 1206, 1552, 1781, 2250, 2320
DdeI	CTNAG	6 cut(s)	108, 285, 351, 362, 639, 1092
EaeI	YGGCCR	3 cut(s)	417, 1070, 2342
Eam1104I	CTCTTC	7 cut(s)	83, 194, 466, 1143, 1188, 1522, 2006
EarI	CTCTTC	7 cut(s)	83, 194, 466, 1143, 1188, 1522, 2006
Ecl136II	GAGCTC	3 cut(s)	17, 131, 459
Eco130I	CCWWGG	7 cut(s)	123, 420, 532, 951, 1371, 1833, 1956
Eco24I	GRGCYC	5 cut(s)	19, 133, 461, 1138, 1661
Eco47I	GGWCC	6 cut(s)	528, 982, 1512, 1624, 2208, 2284
Eco53kI	GAGCTC	3 cut(s)	17, 131, 459
Eco57I	CTGAAG	6 cut(s)	66, 131, 1137, 1492, 1520, 2040
Eco81I	CCTNAGG	1 cut(s)	639
Eco88I	CYCGRG	2 cut(s)	132, 1143
Eco91I	GGTNACC	1 cut(s)	2114
EcoICRI	GAGCTC	3 cut(s)	17, 131, 459
EcoO109I	RGGNCCY	4 cut(s)	528, 982, 1512, 2284
EcoO65I	GGTNACC	1 cut(s)	2114
EcoRII	CCWGG	4 cut(s)	1161, 1258, 1877, 1942
EcoT14I	CCWWGG	7 cut(s)	123, 420, 532, 951, 1371, 1833, 1956
EcoT22I	ATGCAT	4 cut(s)	1722, 2072, 2273, 2312
EcoT38I	GRGCYC	5 cut(s)	19, 133, 461, 1138, 1661
ErhI	CCWWGG	7 cut(s)	123, 420, 532, 951, 1371, 1833, 1956
FalI	AAGNNNNNCTT	2 cut(s)	29, 61
FaqI	GGGAC	4 cut(s)	514, 1259, 1328, 1509
FauI	CCCGC	3 cut(s)	334, 868, 1648
FauNDI	CATATG	1 cut(s)	1663
Fnu4HI	GCNGC	7 cut(s)	32, 138, 183, 1167, 1760, 2031, 2049
FokI	GGATG	6 cut(s)	686, 974, 1193, 1250, 1451, 1926
FriOI	GRGCYC	5 cut(s)	19, 133, 461, 1138, 1661
Fsp4HI	GCNGC	7 cut(s)	32, 138, 183, 1167, 1760, 2031, 2049
FspBI	CTAG	3 cut(s)	618, 1028, 1695
GlaI	GCGC	3 cut(s)	44, 113, 1648
GluI	GCNGC	7 cut(s)	32, 138, 183, 1167, 1760, 2031, 2049
GsuI	CTGGAG	1 cut(s)	2273
HaeIII	GGCC	5 cut(s)	419, 758, 1072, 1882, 2344
HapII	CCGG	3 cut(s)	1436, 2112, 2345
HgaI	GACGC	1 cut(s)	49
HhaI	GCGC	3 cut(s)	45, 114, 1649
Hin6I	GCGC	3 cut(s)	43, 112, 1647
HinP1I	GCGC	3 cut(s)	43, 112, 1647
HincII	GTYRAC	1 cut(s)	740
HindII	GTYRAC	1 cut(s)	740
HindIII	AAGCTT	3 cut(s)	1302, 1611, 2142
HpaII	CCGG	3 cut(s)	1436, 2112, 2345
HphI	GGTGA	3 cut(s)	983, 1070, 1370
Hpy166II	GTNNAC	7 cut(s)	25, 539, 740, 850, 1061, 2060, 2252
Hpy188I	TCNGA	9 cut(s)	85, 484, 631, 961, 1110, 1156, 1285, 1321, 2020
Hpy8I	GTNNAC	7 cut(s)	25, 539, 740, 850, 1061, 2060, 2252
Hpy99I	CGWCG	4 cut(s)	373, 440, 1298, 2226
HpyAV	CCTTC	8 cut(s)	155, 464, 757, 818, 995, 1349, 1516, 2015
HpyCH4III	ACNGT	7 cut(s)	340, 373, 550, 1250, 1380, 2044, 2305
HpyCH4IV	ACGT	7 cut(s)	479, 614, 829, 1477, 1811, 1948, 2178
HpyF3I	CTNAG	6 cut(s)	108, 285, 351, 362, 639, 1092
HpySE526I	ACGT	7 cut(s)	479, 614, 829, 1477, 1811, 1948, 2178
HspAI	GCGC	3 cut(s)	43, 112, 1647
Kpn2I	TCCGGA	1 cut(s)	1435
LguI	GCTCTTC	2 cut(s)	466, 1143
LmnI	GCTCC	5 cut(s)	128, 153, 1825, 2038, 2239
Lsp1109I	GCAGC	4 cut(s)	43, 1153, 1771, 2035
LweI	GCATC	8 cut(s)	150, 253, 458, 937, 964, 2241, 2280, 2359
MaeI	CTAG	3 cut(s)	618, 1028, 1695
MaeII	ACGT	7 cut(s)	479, 614, 829, 1477, 1811, 1948, 2178
MaeIII	GTNAC	2 cut(s)	2114, 2297
MbiI	CCGCTC	2 cut(s)	182, 2033
MflI	RGATCY	3 cut(s)	289, 913, 1525
MhlI	GDGCHC	8 cut(s)	19, 133, 461, 835, 1138, 1661, 1822, 2062
MlsI	TGGCCA	2 cut(s)	419, 1072
MluNI	TGGCCA	2 cut(s)	419, 1072
MlyI	GAGTC	6 cut(s)	488, 950, 1208, 1310, 1544, 1775
MmeI	TCCRAC	3 cut(s)	359, 425, 1362
Mox20I	TGGCCA	2 cut(s)	419, 1072
Mph1103I	ATGCAT	4 cut(s)	1722, 2072, 2273, 2312
MroI	TCCGGA	1 cut(s)	1435
MroXI	GAANNNNTTC	1 cut(s)	1505
MscI	TGGCCA	2 cut(s)	419, 1072
MseI	TTAA	5 cut(s)	702, 1581, 1844, 2108, 2181
MslI	CAYNNNNRTG	5 cut(s)	551, 1419, 1685, 2065, 2266
Msp20I	TGGCCA	2 cut(s)	419, 1072
MspA1I	CMGCKG	4 cut(s)	151, 662, 889, 1655
MspI	CCGG	3 cut(s)	1436, 2112, 2345
MspR9I	CCNGG	4 cut(s)	1163, 1260, 1879, 1944
Mva1269I	GAATGC	2 cut(s)	934, 1568
MvaI	CCWGG	4 cut(s)	1163, 1260, 1879, 1944
MvnI	CGCG	2 cut(s)	13, 43
NcoI	CCATGG	2 cut(s)	951, 1956
NdeI	CATATG	1 cut(s)	1663
NheI	GCTAGC	1 cut(s)	1694
NlaIV	GGNNCC	6 cut(s)	530, 915, 999, 1527, 2241, 2285
NmuCI	GTSAC	1 cut(s)	2297
NruI	TCGCGA	1 cut(s)	13
NsiI	ATGCAT	4 cut(s)	1722, 2072, 2273, 2312
NspI	RCATGY	5 cut(s)	408, 1418, 1724, 1749, 2161
NspV	TTCGAA	1 cut(s)	1396
OliI	CACNNNNGTG	2 cut(s)	551, 1685
PaeI	GCATGC	1 cut(s)	1724
PaeR7I	CTCGAG	1 cut(s)	1143
PaqCI	CACCTGC	1 cut(s)	1046
PciI	ACATGT	2 cut(s)	404, 2157
PciSI	GCTCTTC	2 cut(s)	466, 1143
PctI	GAATGC	2 cut(s)	934, 1568
PdmI	GAANNNNTTC	1 cut(s)	1505
PfeI	GAWTC	5 cut(s)	596, 785, 1340, 1393, 1560
PfoI	TCCNGGA	1 cut(s)	1942
PinAI	ACCGGT	1 cut(s)	2111
PkrI	GCNGC	7 cut(s)	33, 139, 184, 1168, 1761, 2032, 2050
PleI	GAGTC	6 cut(s)	488, 950, 1207, 1310, 1543, 1774
PpsI	GAGTC	6 cut(s)	488, 950, 1207, 1310, 1543, 1774
Ppu21I	YACGTR	1 cut(s)	830
PpuMI	RGGWCCY	4 cut(s)	528, 982, 1512, 2284
PscI	ACATGT	2 cut(s)	404, 2157
PshAI	GACNNNNGTC	1 cut(s)	1501
PshBI	ATTAAT	1 cut(s)	1844
Psp124BI	GAGCTC	3 cut(s)	19, 133, 461
Psp1406I	AACGTT	1 cut(s)	1477
Psp5II	RGGWCCY	4 cut(s)	528, 982, 1512, 2284
Psp6I	CCWGG	4 cut(s)	1161, 1258, 1877, 1942
PspEI	GGTNACC	1 cut(s)	2114
PspGI	CCWGG	4 cut(s)	1161, 1258, 1877, 1942
PspN4I	GGNNCC	6 cut(s)	530, 915, 999, 1527, 2241, 2285
PspPI	GGNCC	7 cut(s)	528, 757, 982, 1512, 1624, 2208, 2284
PspPPI	RGGWCCY	4 cut(s)	528, 982, 1512, 2284
PspXI	VCTCGAGB	1 cut(s)	1143
PstI	CTGCAG	1 cut(s)	1549
PstNI	CAGNNNCTG	1 cut(s)	2048
PsuI	RGATCY	3 cut(s)	289, 913, 1525
PvuII	CAGCTG	2 cut(s)	662, 889
RruI	TCGCGA	1 cut(s)	13
RsaI	GTAC	8 cut(s)	356, 375, 613, 1207, 1553, 1782, 2251, 2321
RsaNI	GTAC	8 cut(s)	355, 374, 612, 1206, 1552, 1781, 2250, 2320
RseI	CAYNNNNRTG	5 cut(s)	551, 1419, 1685, 2065, 2266
SacI	GAGCTC	3 cut(s)	19, 133, 461
SapI	GCTCTTC	2 cut(s)	466, 1143
SaqAI	TTAA	5 cut(s)	702, 1581, 1844, 2108, 2181
SatI	GCNGC	7 cut(s)	32, 138, 183, 1167, 1760, 2031, 2049
Sau96I	GGNCC	7 cut(s)	528, 757, 982, 1512, 1624, 2208, 2284
ScaI	AGTACT	1 cut(s)	1207
SchI	GAGTC	6 cut(s)	488, 950, 1208, 1310, 1544, 1775
ScrFI	CCNGG	4 cut(s)	1163, 1260, 1879, 1944
SduI	GDGCHC	8 cut(s)	19, 133, 461, 835, 1138, 1661, 1822, 2062
SfaNI	GCATC	8 cut(s)	150, 253, 458, 937, 964, 2241, 2280, 2359
SfcI	CTRYAG	2 cut(s)	1545, 2040
Sfr274I	CTCGAG	1 cut(s)	1143
SfuI	TTCGAA	1 cut(s)	1396
SinI	GGWCC	6 cut(s)	528, 982, 1512, 1624, 2208, 2284
SlaI	CTCGAG	1 cut(s)	1143
SmiMI	CAYNNNNRTG	5 cut(s)	551, 1419, 1685, 2065, 2266
SmlI	CTYRAG	3 cut(s)	18, 908, 1143
SmoI	CTYRAG	3 cut(s)	18, 908, 1143
SpeI	ACTAGT	1 cut(s)	1027
SphI	GCATGC	1 cut(s)	1724
SsiI	CCGC	8 cut(s)	137, 151, 182, 327, 875, 1655, 2031, 2353
SspI	AATATT	2 cut(s)	653, 1848
SspMI	CTAG	3 cut(s)	618, 1028, 1695
SstI	GAGCTC	3 cut(s)	19, 133, 461
StyD4I	CCNGG	4 cut(s)	1161, 1258, 1877, 1942
StyI	CCWWGG	7 cut(s)	123, 420, 532, 951, 1371, 1833, 1956
TaaI	ACNGT	7 cut(s)	340, 373, 550, 1250, 1380, 2044, 2305
TaiI	ACGT	7 cut(s)	482, 617, 832, 1480, 1814, 1951, 2181
TaqI	TCGA	8 cut(s)	166, 209, 1144, 1396, 1446, 1572, 1910, 2367
TatI	WGTACW	4 cut(s)	354, 1205, 1780, 2319
TauI	GCSGC	3 cut(s)	140, 185, 2033
TfiI	GAWTC	5 cut(s)	596, 785, 1340, 1393, 1560
Tru1I	TTAA	5 cut(s)	702, 1581, 1844, 2108, 2181
Tru9I	TTAA	5 cut(s)	702, 1581, 1844, 2108, 2181
TscAI	CASTG	6 cut(s)	553, 734, 852, 1350, 1822, 2067
TseFI	GTSAC	1 cut(s)	2297
TseI	GCWGC	4 cut(s)	31, 1166, 1759, 2048
Tsp45I	GTSAC	1 cut(s)	2297
TspRI	CASTG	6 cut(s)	553, 734, 852, 1350, 1822, 2067
VneI	GTGCAC	1 cut(s)	2058
VpaK11BI	GGWCC	6 cut(s)	528, 982, 1512, 1624, 2208, 2284
VspI	ATTAAT	1 cut(s)	1844
XapI	RAATTY	4 cut(s)	274, 632, 903, 1430
XceI	RCATGY	5 cut(s)	408, 1418, 1724, 1749, 2161
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1378
XhoI	CTCGAG	1 cut(s)	1143
XmnI	GAANNNNTTC	1 cut(s)	1505
XspI	CTAG	3 cut(s)	618, 1028, 1695
ZrmI	AGTACT	1 cut(s)	1207
Zsp2I	ATGCAT	4 cut(s)	1722, 2072, 2273, 2312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.