Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0010916

Physical Location & Seq

Genomic Coordinates Reverse (-)

63975156 .. 63980661

Gene Structure 5506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004958

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2373 bp

ATGGGAGGTTCGCGGAACCAAGTGAACAAGGCTCACAAGACGCGGTTTTCGTCCAAGTCGTCGCGGAATCTGCACAAAACTTCAGATAAGGGTAGGATCGGTAAATCGGAGCACAATGTTGCAAAGGGAGCTCGGGCGGCTCGAATTCAGAGAAATAAGATGGTACGGGAGCAGAAGCGGGCTGCTCTTTTGAAAGAGAAGAGAGCTTCGAGTGGATCAGCAAGCCCTCCCCGTGTGATTGTTCTATTCGGGCTTTCGGCGGATGTAAAGCTCAGTTCGCTTTCTGAGGATATTCTTTCTTTGCTGTCTCCACAGGGCTATGGAGGTGCTTTGCCTACTGTCGCTTCTCCAGAGTACAGGCTGAGAGCAACGGTACTGCAAGCACCTCATGGGGATTTGCAATCATGTTTGGAAATGGCTAAGGTTGCTGATCTCATTGCTTTTGTGGCTTCAGCAACCTCTTTGTGTGAAGGAGAGTCTGACTACATTGACTCATTTGGTAGTCAATGTCTTTCTGTGTTTAGGTCTCTTGGTTTACCAAGCACCGTCGTGCTAATACGTGATCTACCTACTGAGGCGAAAAGAAGACATGAGTCAAAGAAAACATGTAGTTCTAGTCTTGCTTCTGAATTTCCTGAAGATTGTAAATTTTTTCCAGCTGATACAAAGGACGAGTTGCACAAGTTCATGTGGCTTTTTAAGGAGCAAAGGCTCTCAGTTCCTCATTGGCGAAGTCAGCGACCTTACCTGATGGCTCAAAAGGTTGAAATGGTAGAAGATGATATGAATCCGGGAACAAGTACCCTTCTCCTCACTGGATATGTGCGAGCTCGTTGTCTTTCTGTTAATCAACTGGTTCATGTTTCTGGTGCCGGGGATTTCCAGTTGTGCAAAATGGAAATTCTCAACGATCCACGTCCTTTGAATGCAAGAAAAGAGCAGGATGTCATGGATGCAGATGAAGTGGATGATGTTGTGGTTCATTCTTTGGTTCCCGATCCGCTGAAGCAGGAGGCTTTACTTGTTGAGAATGTTCCTGATTCCCTTGCTAATGAACAGACATGGCCAACAGAAGAAGAAATGGCAGATGCTGAGAAAAACCAAAAACAAAAAAAGAGGAGAAAAAGGATTCTTCCTCGAGGCACTTCAGAATACCAGGCTGCTTGGATTATCAATGATACAGATGAAGAGGAGTCCGGTACTGATGAAGAAGTTGATGATATGGTAATGGATGAAACAGAGAGTGGTCATCCTGGTGAAGAGGGAAATCATTCAGATCTCAGTGACGATCAAGCTTCTTTAGACTTGAGGGACTCTGACAAAGAAACTGATGCTGATTCAGTGATGATGGACGGTGAACATTTGACCAAGGAACAGTTGGAGGATGAGATCAAAAAAATAAAGGAAGCCCATGCTGATGATGAGGAATTTCCAGATGAAGTGGATACACCATTAGACTTTCCAGCTAGAAAACGTTTTGCAAAGTATAGAGGGCTCAAGTCCTTTAGGACCTCTTCATGGGATCCCAAAGAGTCTCTACCTCCAGAATATGTTAGAATCTTTGCCTTCGAAAATTTCAACAGGACACAGAAAAGCATCCTTGCTAAAGCTTTAGCTATGGAGCAAGAAAACAAGGATGACTGTGCAACAGCTAGCACATATGCAAGGCTGTATATCAAAGAAGTGCCAACTACTGTCGCTTCTAAATTATGTATGCGTGCAAATACTATGCCTATCATAGCATGTGGGCTTTTGCAACATGAGTCCAAGATGTCCGTACTCCATTTCAGCTTAAAAAAGCATGACACTTACAGTGATCCTATCAAAACCAAAGATGAATTAATTTTTCATGTTGGCTTTCGCCAATTTGTTGCTAGGCCAATATTCTCTACCGATAACATGAGTTCAGACAAGCACAAAATGGAGAGGTTCCTTCATCCAGGACGTTTTTCCATGGCGTCAATTTATGCTCCTATTACTTTTCCGGCTCTTCCTTTGATAGCTTTCAAGAGTTCTAAAGGGGAGGCCACTGCACCTACAGTTGCTGCTGTTGGTTCTCTGAGAAGCATTGATCCTGACAGGATTATTCTAAAGAAGATCATTTTAACAGGTTATCCTCAACGAGTTTCGAAAAAGAAAGCTGCTGTGAGGTATATGTTCCATAATCCCGAGGATGTGAGATGGTTCAAGCCTGTGGAAGTGTGGACCAAATGTGGGCGTCGGGGTCGCATCAAGGAGCCTGTTGGTACACATGGGGCAATGAAATGCATCCTTAACGGCACCCTCCAGCAGAATGACACCATATGCATGAGCTTGTACAAGCGCGCATATCCCAAGTGGCCTGACTGCCGTTTTCCAATTCTTGATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AARP2CN RIBIOP_C

Protein Analysis

791

Amino Acids

88.93

Weight (kDa)

6.89

Isoelectric Point (pI)

48.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tsr1_G-like	PF22298	119 - 223	5.8e-06	Tsr1, G-like domain
AARP2CN	PF08142	241 - 305	3.7e-20	AARP2CN (NUC121) domain
RIBIOP_C	PF04950	481 - 778	1.3e-113	40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010916)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42440
fragaria_vesca	FvH4_5g12620 FvH4_5g12620 FvH4_5g12620
malus_domestica	MD06G1211900.v1.1 MD14G1222500.v1.1
prunus_persica	Prupe.5G218100_v2.0.a1
pyrus_communis	pycom14g18410 pycom14g18420
rosa_chinensis	RchiOBHm_Chr7g0184701
rosa_laevigata	RLG00000004958
rosa_multiflora	Rmu_ssc0000289.1_g000022
rosa_roxburghii	Rroxscaffold_3G00269420
rosa_rugosa	Rorug06G0464600 Rorug06G0464600
rosa_samantha	Rh7AG078400 Rh7BG068900 Rh7CG069700 Rh7DG069100
rosa_wichuraiana	Rw7G005700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	1137
AccB1I	GGYRCC	2 cut(s)	869, 2279
AccII	CGCG	4 cut(s)	13, 43, 64, 2325
AciI	CCGC	7 cut(s)	13, 43, 64, 137, 178, 260, 1001
AclI	AACGTT	1 cut(s)	1474
AclWI	GGATC	8 cut(s)	104, 223, 905, 992, 1517, 1530, 1811, 2066
AcoI	YGGCCR	1 cut(s)	1064
AcsI	RAATTY	6 cut(s)	144, 629, 647, 900, 1427, 1573
AcuI	CTGAAG	5 cut(s)	66, 435, 657, 1025, 1131
AcyI	GRCGYC	2 cut(s)	1958, 2218
AfaI	GTAC	8 cut(s)	165, 356, 375, 802, 1201, 1779, 2248, 2318
AfiI	CCNNNNNNNGG	2 cut(s)	1518, 2214
AflIII	ACRYGT	1 cut(s)	605
AgsI	TTSAA	6 cut(s)	193, 767, 925, 1579, 2008, 2188
AjiI	CACGTC	1 cut(s)	917
AjnI	CCWGG	3 cut(s)	1155, 1252, 1939
AleI	CACNNNNGTG	1 cut(s)	548
Alw21I	GWGCWC	3 cut(s)	114, 133, 832
Alw26I	GTCTC	3 cut(s)	312, 531, 1539
AlwI	GGATC	8 cut(s)	104, 223, 905, 992, 1517, 1530, 1811, 2066
AlwNI	CAGNNNCTG	2 cut(s)	1091, 2045
Ama87I	CYCGRG	3 cut(s)	132, 1137, 2168
AoxI	GGCC	4 cut(s)	1064, 1877, 2025, 2339
ApeKI	GCWGC	4 cut(s)	182, 1160, 2045, 2141
ApoI	RAATTY	6 cut(s)	144, 629, 647, 900, 1427, 1573
ArsI	GACNNNNNNTTYG	2 cut(s)	31, 63
AseI	ATTAAT	1 cut(s)	1841
Asp700I	GAANNNNTTC	1 cut(s)	1270
AspLEI	GCGC	2 cut(s)	2325, 2327
AspS9I	GGNCC	2 cut(s)	1509, 2205
AsuC2I	CCSGG	2 cut(s)	792, 874
AsuHPI	GGTGA	2 cut(s)	1268, 1367
AsuII	TTCGAA	2 cut(s)	1569, 2129
AsuNHI	GCTAGC	1 cut(s)	1652
AvaI	CYCGRG	3 cut(s)	132, 1137, 2168
AvaII	GGWCC	2 cut(s)	1509, 2205
BalI	TGGCCA	1 cut(s)	1066
BamHI	GGATCC	1 cut(s)	1522
BanI	GGYRCC	2 cut(s)	869, 2279
BanII	GRGCYC	3 cut(s)	133, 832, 1497
BbsI	GAAGAC	1 cut(s)	592
Bbv12I	GWGCWC	3 cut(s)	114, 133, 832
BbvI	GCAGC	4 cut(s)	169, 1147, 2032, 2128
BccI	CCATC	4 cut(s)	154, 745, 1342, 2175
BceAI	ACGGC	2 cut(s)	2293, 2334
BciT130I	CCWGG	3 cut(s)	1157, 1254, 1941
BciVI	GTATCC	1 cut(s)	1438
BcnI	CCSGG	2 cut(s)	792, 874
BcoDI	GTCTC	3 cut(s)	312, 531, 1539
BfaI	CTAG	4 cut(s)	615, 1467, 1653, 1875
BfmI	CTRYAG	1 cut(s)	2037
BfuI	GTATCC	1 cut(s)	1438
BglII	AGATCT	1 cut(s)	1276
BisI	GCNGC	5 cut(s)	138, 183, 1161, 2046, 2142
BlsI	GCNGC	5 cut(s)	139, 184, 1162, 2047, 2143
Bme1390I	CCNGG	5 cut(s)	792, 874, 1157, 1254, 1941
Bme18I	GGWCC	2 cut(s)	1509, 2205
BmeT110I	CYCGRG	3 cut(s)	132, 1137, 2168
BmgBI	CACGTC	1 cut(s)	917
BmgT120I	GGNCC	2 cut(s)	1509, 2205
BmiI	GGNNCC	7 cut(s)	17, 871, 993, 1524, 1931, 2238, 2281
BmrFI	CCNGG	5 cut(s)	792, 874, 1157, 1254, 1941
BmsI	GCATC	7 cut(s)	943, 1078, 1321, 1605, 2238, 2277, 2356
BmtI	GCTAGC	1 cut(s)	1656
BoxI	GACNNNNGTC	1 cut(s)	592
BpiI	GAAGAC	1 cut(s)	592
BpmI	CTGGAG	3 cut(s)	333, 1527, 2270
Bpu10I	CCTNAGC	1 cut(s)	420
Bpu14I	TTCGAA	2 cut(s)	1569, 2129
BpuEI	CTTGAG	2 cut(s)	1327, 1481
BpuMI	CCSGG	2 cut(s)	792, 874
BsaAI	YACGTR	1 cut(s)	560
BsaBI	GATNNNNATC	1 cut(s)	786
BsaHI	GRCGYC	2 cut(s)	1958, 2218
BsaI	GGTCTC	1 cut(s)	531
BsaJI	CCNNGG	4 cut(s)	873, 1368, 1953, 2169
BsaWI	WCCGGW	1 cut(s)	1196
Bsc4I	CCNNNNNNNGG	2 cut(s)	1518, 2214
Bse1I	ACTGG	3 cut(s)	820, 858, 883
Bse3DI	GCAATG	2 cut(s)	435, 2265
Bse8I	GATNNNNATC	1 cut(s)	786
BseBI	CCWGG	3 cut(s)	1157, 1254, 1941
BseDI	CCNNGG	4 cut(s)	873, 1368, 1953, 2169
BseJI	GATNNNNATC	1 cut(s)	786
BseLI	CCNNNNNNNGG	2 cut(s)	1518, 2214
BseMI	GCAATG	2 cut(s)	435, 2265
BseMII	CTCAG	8 cut(s)	276, 286, 353, 564, 729, 1083, 1294, 2051
BseNI	ACTGG	3 cut(s)	820, 858, 883
BsePI	GCGCGC	1 cut(s)	2323
BseRI	GAGGAG	3 cut(s)	800, 1132, 1205
BseXI	GCAGC	4 cut(s)	169, 1147, 2032, 2128
BsgI	GTGCAG	2 cut(s)	56, 2016
Bsh1236I	CGCG	4 cut(s)	13, 43, 64, 2325
BshFI	GGCC	4 cut(s)	1066, 1879, 2027, 2341
BshNI	GGYRCC	2 cut(s)	869, 2279
BsiHKAI	GWGCWC	3 cut(s)	114, 133, 832
BsiHKCI	CYCGRG	3 cut(s)	132, 1137, 2168
BsiSI	CCGG	4 cut(s)	791, 873, 1197, 1985
BslFI	GGGAC	1 cut(s)	1325
BslI	CCNNNNNNNGG	2 cut(s)	1518, 2214
BsmAI	GTCTC	3 cut(s)	312, 531, 1539
BsmFI	GGGAC	1 cut(s)	1325
BsmI	GAATGC	1 cut(s)	931
BsnI	GGCC	4 cut(s)	1066, 1879, 2027, 2341
Bso31I	GGTCTC	1 cut(s)	531
BsoBI	CYCGRG	3 cut(s)	132, 1137, 2168
Bsp119I	TTCGAA	2 cut(s)	1569, 2129
Bsp1286I	GDGCHC	4 cut(s)	114, 133, 832, 1497
Bsp1407I	TGTACA	1 cut(s)	2316
Bsp19I	CCATGG	1 cut(s)	1953
BspACI	CCGC	7 cut(s)	13, 43, 64, 137, 178, 260, 1001
BspANI	GGCC	4 cut(s)	1066, 1879, 2027, 2341
BspCNI	CTCAG	8 cut(s)	277, 285, 354, 565, 728, 1084, 1293, 2052
BspFNI	CGCG	4 cut(s)	13, 43, 64, 2325
BspLI	GGNNCC	7 cut(s)	17, 871, 993, 1524, 1931, 2238, 2281
BspOI	GCTAGC	1 cut(s)	1656
BspPI	GGATC	8 cut(s)	104, 223, 905, 992, 1517, 1530, 1811, 2066
BspQI	GCTCTTC	1 cut(s)	1995
BspT104I	TTCGAA	2 cut(s)	1569, 2129
BspT107I	GGYRCC	2 cut(s)	869, 2279
BspTNI	GGTCTC	1 cut(s)	531
BsrDI	GCAATG	2 cut(s)	435, 2265
BsrGI	TGTACA	1 cut(s)	2316
BsrI	ACTGG	3 cut(s)	820, 858, 883
BssECI	CCNNGG	4 cut(s)	873, 1368, 1953, 2169
BssHII	GCGCGC	1 cut(s)	2323
BssNI	GRCGYC	2 cut(s)	1958, 2218
BssT1I	CCWWGG	2 cut(s)	1368, 1953
Bst2UI	CCWGG	3 cut(s)	1157, 1254, 1941
Bst4CI	ACNGT	9 cut(s)	340, 373, 547, 1355, 1377, 1643, 1696, 1814, 2041
Bst6I	CTCTTC	5 cut(s)	194, 1182, 1254, 1519, 1995
BstACI	GRCGYC	2 cut(s)	1958, 2218
BstAUI	TGTACA	1 cut(s)	2316
BstBAI	YACGTR	1 cut(s)	560
BstBI	TTCGAA	2 cut(s)	1569, 2129
BstC8I	GCNNGC	7 cut(s)	180, 223, 381, 828, 1654, 1719, 2325
BstDEI	CTNAG	9 cut(s)	272, 285, 362, 420, 573, 715, 1092, 1280, 2060
BstDSI	CCRYGG	1 cut(s)	1953
BstFNI	CGCG	4 cut(s)	13, 43, 64, 2325
BstHHI	GCGC	2 cut(s)	2325, 2327
BstMAI	GTCTC	3 cut(s)	312, 531, 1539
BstMWI	GCNNNNNNNGC	7 cut(s)	70, 128, 137, 277, 425, 446, 736
BstNI	CCWGG	3 cut(s)	1157, 1254, 1941
BstNSI	RCATGY	2 cut(s)	609, 1746
BstPAI	GACNNNNGTC	1 cut(s)	592
BstSCI	CCNGG	5 cut(s)	790, 872, 1155, 1252, 1939
BstSFI	CTRYAG	1 cut(s)	2037
BstUI	CGCG	4 cut(s)	13, 43, 64, 2325
BstV1I	GCAGC	4 cut(s)	169, 1147, 2032, 2128
BstV2I	GAAGAC	1 cut(s)	592
BstX2I	RGATCY	2 cut(s)	1276, 1522
BstYI	RGATCY	2 cut(s)	1276, 1522
BsuI	GTATCC	1 cut(s)	1438
BsuRI	GGCC	4 cut(s)	1066, 1879, 2027, 2341
BtgI	CCRYGG	1 cut(s)	1953
BtrI	CACGTC	1 cut(s)	917
BtsI	GCAGTG	1 cut(s)	2028
BtsIMutI	CAGTG	5 cut(s)	813, 1288, 1347, 1819, 2028
Cac8I	GCNNGC	7 cut(s)	180, 223, 381, 828, 1654, 1719, 2325
CaiI	CAGNNNCTG	2 cut(s)	1091, 2045
CfoI	GCGC	2 cut(s)	2325, 2327
Cfr13I	GGNCC	2 cut(s)	1509, 2205
CseI	GACGC	3 cut(s)	49, 1947, 2207
Csp6I	GTAC	8 cut(s)	164, 355, 374, 801, 1200, 1778, 2247, 2317
CspCI	CAANNNNNGTGG	2 cut(s)	903, 938
CviQI	GTAC	8 cut(s)	164, 355, 374, 801, 1200, 1778, 2247, 2317
DdeI	CTNAG	9 cut(s)	272, 285, 362, 420, 573, 715, 1092, 1280, 2060
EaeI	YGGCCR	1 cut(s)	1064
Eam1104I	CTCTTC	5 cut(s)	194, 1182, 1254, 1519, 1995
EarI	CTCTTC	5 cut(s)	194, 1182, 1254, 1519, 1995
EciI	GGCGGA	1 cut(s)	275
Ecl136II	GAGCTC	2 cut(s)	131, 830
Eco130I	CCWWGG	2 cut(s)	1368, 1953
Eco24I	GRGCYC	3 cut(s)	133, 832, 1497
Eco31I	GGTCTC	1 cut(s)	531
Eco47I	GGWCC	2 cut(s)	1509, 2205
Eco53kI	GAGCTC	2 cut(s)	131, 830
Eco57I	CTGAAG	5 cut(s)	66, 435, 657, 1025, 1131
Eco88I	CYCGRG	3 cut(s)	132, 1137, 2168
EcoICRI	GAGCTC	2 cut(s)	131, 830
EcoO109I	RGGNCCY	1 cut(s)	1509
EcoRI	GAATTC	1 cut(s)	144
EcoRII	CCWGG	3 cut(s)	1155, 1252, 1939
EcoT14I	CCWWGG	2 cut(s)	1368, 1953
EcoT22I	ATGCAT	2 cut(s)	2270, 2309
EcoT38I	GRGCYC	3 cut(s)	133, 832, 1497
ErhI	CCWWGG	2 cut(s)	1368, 1953
FaqI	GGGAC	1 cut(s)	1325
FauI	CCCGC	1 cut(s)	171
FauNDI	CATATG	2 cut(s)	1660, 2303
Fnu4HI	GCNGC	5 cut(s)	138, 183, 1161, 2046, 2142
FriOI	GRGCYC	3 cut(s)	133, 832, 1497
Fsp4HI	GCNGC	5 cut(s)	138, 183, 1161, 2046, 2142
FspBI	CTAG	4 cut(s)	615, 1467, 1653, 1875
GlaI	GCGC	2 cut(s)	2324, 2326
GluI	GCNGC	5 cut(s)	138, 183, 1161, 2046, 2142
GsuI	CTGGAG	3 cut(s)	333, 1527, 2270
HaeIII	GGCC	4 cut(s)	1066, 1879, 2027, 2341
HapII	CCGG	4 cut(s)	791, 873, 1197, 1985
HgaI	GACGC	3 cut(s)	49, 1947, 2207
HhaI	GCGC	2 cut(s)	2325, 2327
Hin1I	GRCGYC	2 cut(s)	1958, 2218
Hin6I	GCGC	2 cut(s)	2323, 2325
HinP1I	GCGC	2 cut(s)	2323, 2325
HindIII	AAGCTT	2 cut(s)	1293, 1608
HpaII	CCGG	4 cut(s)	791, 873, 1197, 1985
HphI	GGTGA	2 cut(s)	1268, 1367
Hpy166II	GTNNAC	5 cut(s)	25, 536, 1358, 2205, 2249
Hpy8I	GTNNAC	5 cut(s)	25, 536, 1358, 2205, 2249
Hpy99I	CGWCG	3 cut(s)	64, 551, 2223
HpyAV	CCTTC	4 cut(s)	464, 815, 1576, 1943
HpyCH4III	ACNGT	9 cut(s)	340, 373, 547, 1355, 1377, 1643, 1696, 1814, 2041
HpyCH4IV	ACGT	4 cut(s)	559, 916, 1474, 1945
HpyF10VI	GCNNNNNNNGC	7 cut(s)	70, 128, 137, 277, 425, 446, 736
HpyF3I	CTNAG	9 cut(s)	272, 285, 362, 420, 573, 715, 1092, 1280, 2060
HpySE526I	ACGT	4 cut(s)	559, 916, 1474, 1945
Hsp92I	GRCGYC	2 cut(s)	1958, 2218
HspAI	GCGC	2 cut(s)	2323, 2325
LguI	GCTCTTC	1 cut(s)	1995
LmnI	GCTCC	7 cut(s)	109, 128, 169, 703, 1621, 1975, 2236
Lsp1109I	GCAGC	4 cut(s)	169, 1147, 2032, 2128
LweI	GCATC	7 cut(s)	943, 1078, 1321, 1605, 2238, 2277, 2356
MaeI	CTAG	4 cut(s)	615, 1467, 1653, 1875
MaeII	ACGT	4 cut(s)	559, 916, 1474, 1945
MaeIII	GTNAC	1 cut(s)	1283
MflI	RGATCY	2 cut(s)	1276, 1522
MhlI	GDGCHC	4 cut(s)	114, 133, 832, 1497
MlsI	TGGCCA	1 cut(s)	1066
MluNI	TGGCCA	1 cut(s)	1066
MlyI	GAGTC	7 cut(s)	485, 485, 602, 1202, 1307, 1541, 1772
MmeI	TCCRAC	1 cut(s)	1359
Mox20I	TGGCCA	1 cut(s)	1066
Mph1103I	ATGCAT	2 cut(s)	2270, 2309
MroXI	GAANNNNTTC	1 cut(s)	1270
MscI	TGGCCA	1 cut(s)	1066
MseI	TTAA	6 cut(s)	699, 846, 1793, 1841, 2105, 2274
MslI	CAYNNNNRTG	4 cut(s)	548, 1254, 1416, 2306
Msp20I	TGGCCA	1 cut(s)	1066
MspA1I	CMGCKG	2 cut(s)	659, 1003
MspI	CCGG	4 cut(s)	791, 873, 1197, 1985
MspR9I	CCNGG	5 cut(s)	792, 874, 1157, 1254, 1941
Mva1269I	GAATGC	1 cut(s)	931
MvaI	CCWGG	3 cut(s)	1157, 1254, 1941
MvnI	CGCG	4 cut(s)	13, 43, 64, 2325
MwoI	GCNNNNNNNGC	7 cut(s)	70, 128, 137, 277, 425, 446, 736
NciI	CCSGG	2 cut(s)	792, 874
NcoI	CCATGG	1 cut(s)	1953
NdeI	CATATG	2 cut(s)	1660, 2303
NheI	GCTAGC	1 cut(s)	1652
NlaIV	GGNNCC	7 cut(s)	17, 871, 993, 1524, 1931, 2238, 2281
NmuCI	GTSAC	1 cut(s)	1283
NsiI	ATGCAT	2 cut(s)	2270, 2309
NspI	RCATGY	2 cut(s)	609, 1746
NspV	TTCGAA	2 cut(s)	1569, 2129
OliI	CACNNNNGTG	1 cut(s)	548
PaeR7I	CTCGAG	1 cut(s)	1137
PauI	GCGCGC	1 cut(s)	2323
PciI	ACATGT	1 cut(s)	605
PciSI	GCTCTTC	1 cut(s)	1995
PcsI	WCGNNNNNNNCGW	3 cut(s)	47, 56, 139
PctI	GAATGC	1 cut(s)	931
PdmI	GAANNNNTTC	1 cut(s)	1270
PfeI	GAWTC	6 cut(s)	67, 787, 1040, 1129, 1337, 1557
PfoI	TCCNGGA	2 cut(s)	790, 1939
PkrI	GCNGC	5 cut(s)	139, 184, 1162, 2047, 2143
PleI	GAGTC	7 cut(s)	484, 485, 601, 1201, 1307, 1540, 1771
PpsI	GAGTC	7 cut(s)	484, 485, 601, 1201, 1307, 1540, 1771
Ppu21I	YACGTR	1 cut(s)	560
PpuMI	RGGWCCY	1 cut(s)	1509
PscI	ACATGT	1 cut(s)	605
PshAI	GACNNNNGTC	1 cut(s)	592
PshBI	ATTAAT	1 cut(s)	1841
Psp124BI	GAGCTC	2 cut(s)	133, 832
Psp1406I	AACGTT	1 cut(s)	1474
Psp5II	RGGWCCY	1 cut(s)	1509
Psp6I	CCWGG	3 cut(s)	1155, 1252, 1939
PspGI	CCWGG	3 cut(s)	1155, 1252, 1939
PspN4I	GGNNCC	7 cut(s)	17, 871, 993, 1524, 1931, 2238, 2281
PspPI	GGNCC	2 cut(s)	1509, 2205
PspPPI	RGGWCCY	1 cut(s)	1509
PspXI	VCTCGAGB	1 cut(s)	1137
PstNI	CAGNNNCTG	2 cut(s)	1091, 2045
PsuI	RGATCY	2 cut(s)	1276, 1522
PteI	GCGCGC	1 cut(s)	2323
PvuII	CAGCTG	1 cut(s)	659
RsaI	GTAC	8 cut(s)	165, 356, 375, 802, 1201, 1779, 2248, 2318
RsaNI	GTAC	8 cut(s)	164, 355, 374, 801, 1200, 1778, 2247, 2317
RseI	CAYNNNNRTG	4 cut(s)	548, 1254, 1416, 2306
SacI	GAGCTC	2 cut(s)	133, 832
SapI	GCTCTTC	1 cut(s)	1995
SaqAI	TTAA	6 cut(s)	699, 846, 1793, 1841, 2105, 2274
SatI	GCNGC	5 cut(s)	138, 183, 1161, 2046, 2142
Sau96I	GGNCC	2 cut(s)	1509, 2205
SchI	GAGTC	7 cut(s)	485, 485, 602, 1202, 1307, 1541, 1772
ScrFI	CCNGG	5 cut(s)	792, 874, 1157, 1254, 1941
SduI	GDGCHC	4 cut(s)	114, 133, 832, 1497
SfaNI	GCATC	7 cut(s)	943, 1078, 1321, 1605, 2238, 2277, 2356
SfcI	CTRYAG	1 cut(s)	2037
Sfr274I	CTCGAG	1 cut(s)	1137
SfuI	TTCGAA	2 cut(s)	1569, 2129
SinI	GGWCC	2 cut(s)	1509, 2205
SlaI	CTCGAG	1 cut(s)	1137
SmiMI	CAYNNNNRTG	4 cut(s)	548, 1254, 1416, 2306
SmlI	CTYRAG	3 cut(s)	1137, 1306, 1496
SmoI	CTYRAG	3 cut(s)	1137, 1306, 1496
SsiI	CCGC	7 cut(s)	13, 43, 64, 137, 178, 260, 1001
SspI	AATATT	1 cut(s)	1884
SspMI	CTAG	4 cut(s)	615, 1467, 1653, 1875
SstI	GAGCTC	2 cut(s)	133, 832
StyD4I	CCNGG	5 cut(s)	790, 872, 1155, 1252, 1939
StyI	CCWWGG	2 cut(s)	1368, 1953
TaaI	ACNGT	9 cut(s)	340, 373, 547, 1355, 1377, 1643, 1696, 1814, 2041
TaiI	ACGT	4 cut(s)	562, 919, 1477, 1948
TaqI	TCGA	5 cut(s)	142, 209, 1138, 1569, 2129
TatI	WGTACW	2 cut(s)	354, 2316
TauI	GCSGC	1 cut(s)	140
TfiI	GAWTC	6 cut(s)	67, 787, 1040, 1129, 1337, 1557
Tru1I	TTAA	6 cut(s)	699, 846, 1793, 1841, 2105, 2274
Tru9I	TTAA	6 cut(s)	699, 846, 1793, 1841, 2105, 2274
TscAI	CASTG	5 cut(s)	820, 1288, 1347, 1819, 2035
TseFI	GTSAC	1 cut(s)	1283
TseI	GCWGC	4 cut(s)	182, 1160, 2045, 2141
Tsp45I	GTSAC	1 cut(s)	1283
TspGWI	ACGGA	1 cut(s)	1765
TspRI	CASTG	5 cut(s)	820, 1288, 1347, 1819, 2035
VpaK11BI	GGWCC	2 cut(s)	1509, 2205
VspI	ATTAAT	1 cut(s)	1841
XapI	RAATTY	6 cut(s)	144, 629, 647, 900, 1427, 1573
XceI	RCATGY	2 cut(s)	609, 1746
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1375
XhoI	CTCGAG	1 cut(s)	1137
XmnI	GAANNNNTTC	1 cut(s)	1270
XspI	CTAG	4 cut(s)	615, 1467, 1653, 1875
Zsp2I	ATGCAT	2 cut(s)	2270, 2309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.