AT1G42480

TLR4 regulator and MIR-interacting MSAP

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011086
Physical Location & Seq
Forward (+)
15936156 .. 15938974
2819 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G42480.2

Sequence Viewer

Length: 549 bp
ATGGCGAAGCTGGTGCTCTTCACCGCCGTAATTATCGCTATTTTCTCCCATGGATCCTCCGTCGATGACAAATGCGCCGCTTGTAACGCCGTCGCTGAGGAATTAGAGTTACAGCTTTTAAAGGAAAAGCCACGAAACCATCTTGATATGAGAAACCGGCTCAATTCTAAAGGCCAGCGTGAAGGAAAGGTCATTGATTACAGAATAAGCGACCTGAGGGTGGTTGATTTGTTGGACGGTCTGTGTGATAGAATGCAGGACTATACTCTACAAAAGGTGGAACCTAAGAATAGACAATGGGTGAAAGTAGGAAATTTTGACAATCTAACAAATAAACAGGAAGCGAAAGCGCATGCAAATGACATTTCAACTTATTGTGGAAGATTGCTGGAGGAAACTGAAGATGAGCTAGGTGAGGTGATAAAGAATGGCTCCCTAAAAGCAGGAGAAGTCCGAAAGGTTCTGTGTCAAACTTTGAGTAACCACTGCCGACAATCAAGTGAAACAGACTCAGAGGATGAGGAGGACGACGATGCAGATGAATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3456

Protein Analysis

182

Amino Acids

20.57

Weight (kDa)

4.88

Isoelectric Point (pI)

28.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3456 PF11938 24 - 103 1.3e-23 TLR4 regulator and MIR-interacting MSAP
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011086)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G42480 AT1G42480 AT1G42480
fragaria_vesca FvH4_5g25650 FvH4_5g25650
malus_domestica MD06G1006600.v1.1
prunus_persica Prupe.5G008600_v2.0.a1 Prupe.5G008700_v2.0.a1
pyrus_communis pycom06g00580
rosa_chinensis RchiOBHm_Chr7g0215941
rosa_laevigata RLG00000002605
rosa_multiflora Rmu_co8213036.1_g000001 Rmu_sc0030911.1_g000001
rosa_roxburghii Rroxscaffold_3G00243760
rosa_rugosa Rorug07G0157200
rosa_samantha Rh7AG295200 Rh7BG287200 Rh7CG315300 Rh7DG297900
rosa_wichuraiana Rw7G025070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 547
AciI CCGC 2 cut(s) 24, 78
AclWI GGATC 2 cut(s) 48, 61
AcsI RAATTY 1 cut(s) 313
AcuI CTGAAG 1 cut(s) 420
AfiI CCNNNNNNNGG 1 cut(s) 220
AgsI TTSAA 1 cut(s) 369
AluBI AGCT 3 cut(s) 10, 115, 409
AluI AGCT 3 cut(s) 10, 115, 409
Alw21I GWGCWC 1 cut(s) 18
AlwI GGATC 2 cut(s) 48, 61
AoxI GGCC 1 cut(s) 172
ApoI RAATTY 1 cut(s) 313
AspLEI GCGC 2 cut(s) 77, 352
AsuHPI GGTGA 4 cut(s) 13, 313, 425, 430
AxyI CCTNAGG 1 cut(s) 215
BamHI GGATCC 1 cut(s) 53
Bbv12I GWGCWC 1 cut(s) 18
BbvCI CCTCAGC 1 cut(s) 96
BccI CCATC 1 cut(s) 147
BceAI ACGGC 2 cut(s) 11, 74
BcgI CGANNNNNNTGC 1 cut(s) 29
BfaI CTAG 1 cut(s) 410
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
BmiI GGNNCC 3 cut(s) 55, 282, 433
BmsI GCATC 1 cut(s) 523
BpmI CTGGAG 1 cut(s) 410
Bpu10I CCTNAGC 1 cut(s) 96
BsaJI CCNNGG 1 cut(s) 49
Bsc4I CCNNNNNNNGG 1 cut(s) 220
Bse118I RCCGGY 1 cut(s) 156
Bse21I CCTNAGG 1 cut(s) 215
BseDI CCNNGG 1 cut(s) 49
BseGI GGATG 1 cut(s) 523
BseLI CCNNNNNNNGG 1 cut(s) 220
BseMII CTCAG 3 cut(s) 87, 206, 525
BseRI GAGGAG 1 cut(s) 536
BshFI GGCC 1 cut(s) 174
BsiHKAI GWGCWC 1 cut(s) 18
BsiSI CCGG 1 cut(s) 157
BslI CCNNNNNNNGG 1 cut(s) 220
BsmI GAATGC 1 cut(s) 258
BsnI GGCC 1 cut(s) 174
Bsp1286I GDGCHC 1 cut(s) 18
Bsp143I GATC 1 cut(s) 53
Bsp19I CCATGG 1 cut(s) 49
BspACI CCGC 2 cut(s) 24, 78
BspANI GGCC 1 cut(s) 174
BspCNI CTCAG 3 cut(s) 88, 207, 524
BspLI GGNNCC 3 cut(s) 55, 282, 433
BspPI GGATC 2 cut(s) 48, 61
BspQI GCTCTTC 1 cut(s) 23
BsrFI RCCGGY 1 cut(s) 156
BssAI RCCGGY 1 cut(s) 156
BssECI CCNNGG 1 cut(s) 49
BssMI GATC 1 cut(s) 53
BssT1I CCWWGG 1 cut(s) 49
Bst4CI ACNGT 1 cut(s) 239
Bst6I CTCTTC 1 cut(s) 23
BstC8I GCNNGC 2 cut(s) 176, 354
BstDEI CTNAG 4 cut(s) 96, 215, 285, 511
BstDSI CCRYGG 1 cut(s) 49
BstF5I GGATG 1 cut(s) 523
BstHHI GCGC 2 cut(s) 77, 352
BstKTI GATC 1 cut(s) 56
BstMBI GATC 1 cut(s) 53
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstNSI RCATGY 1 cut(s) 356
BstX2I RGATCY 1 cut(s) 53
BstYI RGATCY 1 cut(s) 53
Bsu36I CCTNAGG 1 cut(s) 215
BsuRI GGCC 1 cut(s) 174
BtgI CCRYGG 1 cut(s) 49
BtsCI GGATG 1 cut(s) 523
BtsI GCAGTG 1 cut(s) 484
BtsIMutI CAGTG 1 cut(s) 484
Cac8I GCNNGC 2 cut(s) 176, 354
CfoI GCGC 2 cut(s) 77, 352
Cfr10I RCCGGY 1 cut(s) 156
CviAII CATG 2 cut(s) 50, 353
CviJI RGCY 7 cut(s) 10, 115, 130, 160, 174, 409, 432
CviKI_1 RGCY 7 cut(s) 10, 115, 130, 160, 174, 409, 432
DdeI CTNAG 4 cut(s) 96, 215, 285, 511
DpnI GATC 1 cut(s) 55
DpnII GATC 1 cut(s) 53
DraI TTTAAA 1 cut(s) 120
Eam1104I CTCTTC 1 cut(s) 23
EarI CTCTTC 1 cut(s) 23
Eco130I CCWWGG 1 cut(s) 49
Eco57I CTGAAG 1 cut(s) 420
Eco81I CCTNAGG 1 cut(s) 215
EcoT14I CCWWGG 1 cut(s) 49
ErhI CCWWGG 1 cut(s) 49
FaeI CATG 2 cut(s) 53, 356
FaiI YATR 5 cut(s) 51, 149, 264, 354, 547
FatI CATG 2 cut(s) 49, 352
Fnu4HI GCNGC 1 cut(s) 78
FokI GGATG 1 cut(s) 530
Fsp4HI GCNGC 1 cut(s) 78
FspBI CTAG 1 cut(s) 410
GlaI GCGC 2 cut(s) 76, 351
GluI GCNGC 1 cut(s) 78
GsuI CTGGAG 1 cut(s) 410
HaeIII GGCC 1 cut(s) 174
HapII CCGG 1 cut(s) 157
HhaI GCGC 2 cut(s) 77, 352
Hin1II CATG 2 cut(s) 53, 356
Hin6I GCGC 2 cut(s) 75, 350
HinP1I GCGC 2 cut(s) 75, 350
HinfI GANTC 1 cut(s) 509
HpaII CCGG 1 cut(s) 157
HphI GGTGA 4 cut(s) 13, 313, 425, 430
Hpy188I TCNGA 2 cut(s) 455, 514
Hpy188III TCNNGA 1 cut(s) 143
Hpy99I CGWCG 3 cut(s) 65, 95, 533
HpyAV CCTTC 1 cut(s) 176
HpyCH4III ACNGT 1 cut(s) 239
HpyCH4V TGCA 3 cut(s) 256, 356, 536
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 4 cut(s) 96, 215, 285, 511
Hsp92II CATG 2 cut(s) 53, 356
HspAI GCGC 2 cut(s) 75, 350
Kzo9I GATC 1 cut(s) 53
LguI GCTCTTC 1 cut(s) 23
LmnI GCTCC 1 cut(s) 437
LpnPI CCDG 7 cut(s) 170, 188, 227, 242, 323, 374, 429
LweI GCATC 1 cut(s) 523
MaeI CTAG 1 cut(s) 410
MaeIII GTNAC 3 cut(s) 83, 108, 479
MalI GATC 1 cut(s) 55
MboI GATC 1 cut(s) 53
MboII GAAGA 3 cut(s) 10, 393, 413
MflI RGATCY 1 cut(s) 53
MhlI GDGCHC 1 cut(s) 18
MluCI AATT 5 cut(s) 30, 101, 163, 313, 542
MlyI GAGTC 1 cut(s) 503
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 8 cut(s) 67, 91, 210, 385, 409, 508, 514, 517
MseI TTAA 1 cut(s) 119
MslI CAYNNNNRTG 1 cut(s) 357
MspI CCGG 1 cut(s) 157
Mva1269I GAATGC 1 cut(s) 258
MwoI GCNNNNNNNGC 1 cut(s) 86
NcoI CCATGG 1 cut(s) 49
NdeII GATC 1 cut(s) 53
NlaIII CATG 2 cut(s) 53, 356
NlaIV GGNNCC 3 cut(s) 55, 282, 433
NspI RCATGY 1 cut(s) 356
PaeI GCATGC 1 cut(s) 356
PciSI GCTCTTC 1 cut(s) 23
PctI GAATGC 1 cut(s) 258
PkrI GCNGC 1 cut(s) 79
PleI GAGTC 1 cut(s) 503
PpsI GAGTC 1 cut(s) 503
PsiI TTATAA 1 cut(s) 547
PspN4I GGNNCC 3 cut(s) 55, 282, 433
PsuI RGATCY 1 cut(s) 53
RseI CAYNNNNRTG 1 cut(s) 357
SapI GCTCTTC 1 cut(s) 23
SaqAI TTAA 1 cut(s) 119
SatI GCNGC 1 cut(s) 78
Sau3AI GATC 1 cut(s) 53
SchI GAGTC 1 cut(s) 503
SduI GDGCHC 1 cut(s) 18
SfaNI GCATC 1 cut(s) 523
SmiMI CAYNNNNRTG 1 cut(s) 357
SphI GCATGC 1 cut(s) 356
Sse9I AATT 5 cut(s) 30, 101, 163, 313, 542
SsiI CCGC 2 cut(s) 24, 78
SspMI CTAG 1 cut(s) 410
StyI CCWWGG 1 cut(s) 49
TaaI ACNGT 1 cut(s) 239
TaqI TCGA 1 cut(s) 63
TasI AATT 5 cut(s) 30, 101, 163, 313, 542
TauI GCSGC 1 cut(s) 80
Tru1I TTAA 1 cut(s) 119
Tru9I TTAA 1 cut(s) 119
TscAI CASTG 1 cut(s) 491
TspGWI ACGGA 1 cut(s) 49
TspRI CASTG 1 cut(s) 491
XapI RAATTY 1 cut(s) 313
XceI RCATGY 1 cut(s) 356
XspI CTAG 1 cut(s) 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.