Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0011086

Physical Location & Seq

Genomic Coordinates Forward (+)

541271 .. 544234

Gene Structure 2964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g00580.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAGAGGGTCAATGGTGGTGAGGTTGGCTTTGATCTTCACCATTTTGTCGATGGCTGCTTCGATCGACGACAAATGCACTGCTTGCAATGCGGTCGCGGAGGAGCTTGAGCTGGGACTTTCCAACGAAAAACCCAGAAACCATTTGGATATGAGACACCGTTTGGACTCAACCGGTCAACGGAGAGGAAGGGTAATCGACTACAGAGTCAGCGAGCTAAGAGCGGTTGAACTCCTCGATGGACTTTGCGATAAGATGCAGGAATACACTCTTCACAAGAAAGAGTGGGTCAAAGTGGATAGCTGGGATAACCTCACGATAAGTAAACAAGAAGCTAAAGCATATTCAAAGGATTTGTCGACCTATTGTGGAAGATTACTTGAGGATACAGAAGACGAGTTGACTGAATTGATAAAGAAAGGGTCTGTTAGAGTAGGGGATGTAAGCAAGGTCCTATGTCAAGATCTGAGTAAACACTGCAGCAGGGCAAGTGTATCGAATGGATCAGATGGAGAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3456

Protein Analysis

174

Amino Acids

19.45

Weight (kDa)

5.85

Isoelectric Point (pI)

28.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42480 AT1G42480 AT1G42480
fragaria_vesca	FvH4_5g25650 FvH4_5g25650
malus_domestica	MD06G1006600.v1.1
prunus_persica	Prupe.5G008600_v2.0.a1 Prupe.5G008700_v2.0.a1
pyrus_communis	pycom06g00580
rosa_chinensis	RchiOBHm_Chr7g0215941
rosa_laevigata	RLG00000002605
rosa_multiflora	Rmu_co8213036.1_g000001 Rmu_sc0030911.1_g000001
rosa_roxburghii	Rroxscaffold_3G00243760
rosa_rugosa	Rorug07G0157200
rosa_samantha	Rh7AG295200 Rh7BG287200 Rh7CG315300 Rh7DG297900
rosa_wichuraiana	Rw7G025070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	206
AccBSI	CCGCTC	1 cut(s)	224
AccI	GTMKAC	1 cut(s)	359
AccII	CGCG	1 cut(s)	98
AciI	CCGC	3 cut(s)	92, 98, 224
AclWI	GGATC	1 cut(s)	511
AfiI	CCNNNNNNNGG	1 cut(s)	180
AgeI	ACCGGT	1 cut(s)	173
AgsI	TTSAA	2 cut(s)	230, 348
AluBI	AGCT	5 cut(s)	106, 112, 217, 303, 335
AluI	AGCT	5 cut(s)	106, 112, 217, 303, 335
Alw26I	GTCTC	1 cut(s)	148
AlwI	GGATC	1 cut(s)	511
ApeKI	GCWGC	2 cut(s)	56, 480
ArsI	GACNNNNNNTTYG	2 cut(s)	341, 373
AsiGI	ACCGGT	1 cut(s)	173
AspS9I	GGNCC	1 cut(s)	451
AsuHPI	GGTGA	2 cut(s)	31, 31
AvaII	GGWCC	1 cut(s)	451
BbsI	GAAGAC	1 cut(s)	399
BbvI	GCAGC	2 cut(s)	43, 492
BccI	CCATC	3 cut(s)	46, 233, 503
BcgI	CGANNNNNNTGC	4 cut(s)	76, 110, 477, 511
BciVI	GTATCC	1 cut(s)	379
BcoDI	GTCTC	1 cut(s)	148
BfmI	CTRYAG	2 cut(s)	202, 478
BfuI	GTATCC	1 cut(s)	379
BglII	AGATCT	1 cut(s)	463
BisI	GCNGC	2 cut(s)	57, 481
BlsI	GCNGC	2 cut(s)	58, 482
Bme18I	GGWCC	1 cut(s)	451
BmgT120I	GGNCC	1 cut(s)	451
BmsI	GCATC	1 cut(s)	246
BpiI	GAAGAC	1 cut(s)	399
BpuEI	CTTGAG	2 cut(s)	128, 401
BsaWI	WCCGGW	1 cut(s)	173
Bsc4I	CCNNNNNNNGG	1 cut(s)	180
Bse118I	RCCGGY	1 cut(s)	173
Bse3DI	GCAATG	1 cut(s)	94
BseGI	GGATG	1 cut(s)	445
BseLI	CCNNNNNNNGG	1 cut(s)	180
BseMI	GCAATG	1 cut(s)	94
BseMII	CTCAG	1 cut(s)	458
BseRI	GAGGAG	2 cut(s)	116, 224
BseXI	GCAGC	2 cut(s)	43, 492
BseYI	CCCAGC	2 cut(s)	112, 303
Bsh1236I	CGCG	1 cut(s)	98
Bsh1285I	CGRYCG	2 cut(s)	66, 96
BshTI	ACCGGT	1 cut(s)	173
BsiEI	CGRYCG	2 cut(s)	66, 96
BsiSI	CCGG	1 cut(s)	174
BslFI	GGGAC	1 cut(s)	129
BslI	CCNNNNNNNGG	1 cut(s)	180
BsmAI	GTCTC	1 cut(s)	148
BsmFI	GGGAC	1 cut(s)	129
Bsp143I	GATC	4 cut(s)	33, 63, 463, 503
BspACI	CCGC	3 cut(s)	92, 98, 224
BspCNI	CTCAG	1 cut(s)	459
BspFNI	CGCG	1 cut(s)	98
BspMAI	CTGCAG	1 cut(s)	482
BspPI	GGATC	1 cut(s)	511
BsrBI	CCGCTC	1 cut(s)	224
BsrDI	GCAATG	1 cut(s)	94
BsrFI	RCCGGY	1 cut(s)	173
BssAI	RCCGGY	1 cut(s)	173
BssMI	GATC	4 cut(s)	33, 63, 463, 503
Bst4CI	ACNGT	1 cut(s)	161
Bst6I	CTCTTC	1 cut(s)	276
BstAPI	GCANNNNNTGC	1 cut(s)	84
BstC8I	GCNNGC	2 cut(s)	85, 215
BstDEI	CTNAG	2 cut(s)	218, 467
BstF5I	GGATG	1 cut(s)	445
BstFNI	CGCG	1 cut(s)	98
BstKTI	GATC	4 cut(s)	36, 66, 466, 506
BstMAI	GTCTC	1 cut(s)	148
BstMBI	GATC	4 cut(s)	33, 63, 463, 503
BstMCI	CGRYCG	2 cut(s)	66, 96
BstMWI	GCNNNNNNNGC	2 cut(s)	84, 89
BstSFI	CTRYAG	2 cut(s)	202, 478
BstUI	CGCG	1 cut(s)	98
BstV1I	GCAGC	2 cut(s)	43, 492
BstV2I	GAAGAC	1 cut(s)	399
BstX2I	RGATCY	1 cut(s)	463
BstYI	RGATCY	1 cut(s)	463
BsuI	GTATCC	1 cut(s)	379
BtsCI	GGATG	1 cut(s)	445
BtsI	GCAGTG	2 cut(s)	78, 475
BtsIMutI	CAGTG	2 cut(s)	78, 475
Cac8I	GCNNGC	2 cut(s)	85, 215
Cfr10I	RCCGGY	1 cut(s)	173
Cfr13I	GGNCC	1 cut(s)	451
CspAI	ACCGGT	1 cut(s)	173
CviJI	RGCY	7 cut(s)	29, 56, 106, 112, 217, 303, 335
CviKI_1	RGCY	7 cut(s)	29, 56, 106, 112, 217, 303, 335
DdeI	CTNAG	2 cut(s)	218, 467
DpnI	GATC	4 cut(s)	35, 65, 465, 505
DpnII	GATC	4 cut(s)	33, 63, 463, 503
DrdI	GACNNNNNNGTC	1 cut(s)	206
DseDI	GACNNNNNNGTC	1 cut(s)	206
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Eco47I	GGWCC	1 cut(s)	451
EcoO109I	RGGNCCY	1 cut(s)	451
FaiI	YATR	3 cut(s)	152, 343, 457
FaqI	GGGAC	1 cut(s)	129
FblI	GTMKAC	1 cut(s)	359
Fnu4HI	GCNGC	2 cut(s)	57, 481
FokI	GGATG	1 cut(s)	452
Fsp4HI	GCNGC	2 cut(s)	57, 481
GluI	GCNGC	2 cut(s)	57, 481
GsaI	CCCAGC	2 cut(s)	116, 307
HapII	CCGG	1 cut(s)	174
HincII	GTYRAC	3 cut(s)	179, 360, 402
HindII	GTYRAC	3 cut(s)	179, 360, 402
HinfI	GANTC	2 cut(s)	167, 207
HpaII	CCGG	1 cut(s)	174
HphI	GGTGA	2 cut(s)	31, 31
Hpy166II	GTNNAC	5 cut(s)	179, 326, 360, 402, 473
Hpy188I	TCNGA	2 cut(s)	468, 508
Hpy188III	TCNNGA	2 cut(s)	316, 461
Hpy8I	GTNNAC	5 cut(s)	179, 326, 360, 402, 473
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	1 cut(s)	183
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4V	TGCA	4 cut(s)	78, 87, 259, 480
HpyF10VI	GCNNNNNNNGC	2 cut(s)	84, 89
HpyF3I	CTNAG	2 cut(s)	218, 467
Kzo9I	GATC	4 cut(s)	33, 63, 463, 503
LmnI	GCTCC	1 cut(s)	103
LpnPI	CCDG	6 cut(s)	98, 148, 187, 245, 289, 469
Lsp1109I	GCAGC	2 cut(s)	43, 492
LweI	GCATC	1 cut(s)	246
MalI	GATC	4 cut(s)	35, 65, 465, 505
MbiI	CCGCTC	1 cut(s)	224
MboI	GATC	4 cut(s)	33, 63, 463, 503
MboII	GAAGA	4 cut(s)	28, 263, 384, 404
MflI	RGATCY	1 cut(s)	463
MluCI	AATT	1 cut(s)	407
MlyI	GAGTC	2 cut(s)	161, 216
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	6 cut(s)	15, 94, 179, 245, 323, 376
MspI	CCGG	1 cut(s)	174
MvnI	CGCG	1 cut(s)	98
MwoI	GCNNNNNNNGC	2 cut(s)	84, 89
NdeII	GATC	4 cut(s)	33, 63, 463, 503
PinAI	ACCGGT	1 cut(s)	173
PkrI	GCNGC	2 cut(s)	58, 482
Ple19I	CGATCG	1 cut(s)	66
PleI	GAGTC	2 cut(s)	161, 215
PpsI	GAGTC	2 cut(s)	161, 215
PpuMI	RGGWCCY	1 cut(s)	451
Psp5II	RGGWCCY	1 cut(s)	451
PspFI	CCCAGC	2 cut(s)	112, 303
PspPI	GGNCC	1 cut(s)	451
PspPPI	RGGWCCY	1 cut(s)	451
PstI	CTGCAG	1 cut(s)	482
PsuI	RGATCY	1 cut(s)	463
PvuI	CGATCG	1 cut(s)	66
SalI	GTCGAC	1 cut(s)	358
SatI	GCNGC	2 cut(s)	57, 481
Sau3AI	GATC	4 cut(s)	33, 63, 463, 503
Sau96I	GGNCC	1 cut(s)	451
SchI	GAGTC	2 cut(s)	161, 216
SetI	ASST	9 cut(s)	26, 108, 114, 219, 305, 315, 337, 365, 453
SfaNI	GCATC	1 cut(s)	246
SfcI	CTRYAG	2 cut(s)	202, 478
SinI	GGWCC	1 cut(s)	451
SmlI	CTYRAG	2 cut(s)	107, 380
SmoI	CTYRAG	2 cut(s)	107, 380
Sse9I	AATT	1 cut(s)	407
SsiI	CCGC	3 cut(s)	92, 98, 224
TaaI	ACNGT	1 cut(s)	161
TaqI	TCGA	7 cut(s)	50, 62, 66, 198, 237, 359, 497
TasI	AATT	1 cut(s)	407
TscAI	CASTG	2 cut(s)	85, 482
TseI	GCWGC	2 cut(s)	56, 480
TspGWI	ACGGA	1 cut(s)	196
TspRI	CASTG	2 cut(s)	85, 482
VpaK11BI	GGWCC	1 cut(s)	451
XcmI	CCANNNNNNNNNTGG	2 cut(s)	49, 142
XmiI	GTMKAC	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.