TLR4 regulator and MIR-interacting MSAP
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G42480 AT1G42480 AT1G42480 |
| fragaria_vesca | FvH4_5g25650 FvH4_5g25650 |
| malus_domestica | MD06G1006600.v1.1 |
| prunus_persica | Prupe.5G008600_v2.0.a1 Prupe.5G008700_v2.0.a1 |
| pyrus_communis | pycom06g00580 |
| rosa_chinensis | RchiOBHm_Chr7g0215941 |
| rosa_laevigata | RLG00000002605 |
| rosa_multiflora | Rmu_co8213036.1_g000001 Rmu_sc0030911.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00243760 |
| rosa_rugosa | Rorug07G0157200 |
| rosa_samantha | Rh7AG295200 Rh7BG287200 Rh7CG315300 Rh7DG297900 |
| rosa_wichuraiana | Rw7G025070 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 124 |
| AgsI | TTSAA | 3 cut(s) | 43, 101, 176 |
| AluBI | AGCT | 2 cut(s) | 30, 163 |
| AluI | AGCT | 2 cut(s) | 30, 163 |
| Alw21I | GWGCWC | 1 cut(s) | 32 |
| AlwI | GGATC | 1 cut(s) | 124 |
| BanII | GRGCYC | 1 cut(s) | 32 |
| Bbv12I | GWGCWC | 1 cut(s) | 32 |
| BccI | CCATC | 1 cut(s) | 46 |
| BfaI | CTAG | 1 cut(s) | 164 |
| BmsI | GCATC | 1 cut(s) | 59 |
| BseMII | CTCAG | 1 cut(s) | 45 |
| BseRI | GAGGAG | 1 cut(s) | 37 |
| BsiHKAI | GWGCWC | 1 cut(s) | 32 |
| Bsp1286I | GDGCHC | 1 cut(s) | 32 |
| Bsp143I | GATC | 1 cut(s) | 116 |
| BspCNI | CTCAG | 1 cut(s) | 44 |
| BspPI | GGATC | 1 cut(s) | 124 |
| BssMI | GATC | 1 cut(s) | 116 |
| Bst4CI | ACNGT | 1 cut(s) | 196 |
| Bst6I | CTCTTC | 1 cut(s) | 89 |
| BstDEI | CTNAG | 1 cut(s) | 31 |
| BstKTI | GATC | 1 cut(s) | 119 |
| BstMBI | GATC | 1 cut(s) | 116 |
| BtsIMutI | CAGTG | 1 cut(s) | 30 |
| CviJI | RGCY | 2 cut(s) | 30, 163 |
| CviKI_1 | RGCY | 2 cut(s) | 30, 163 |
| DdeI | CTNAG | 1 cut(s) | 31 |
| DpnI | GATC | 1 cut(s) | 118 |
| DpnII | GATC | 1 cut(s) | 116 |
| Eam1104I | CTCTTC | 1 cut(s) | 89 |
| EarI | CTCTTC | 1 cut(s) | 89 |
| Ecl136II | GAGCTC | 1 cut(s) | 30 |
| Eco24I | GRGCYC | 1 cut(s) | 32 |
| Eco53kI | GAGCTC | 1 cut(s) | 30 |
| EcoICRI | GAGCTC | 1 cut(s) | 30 |
| EcoT38I | GRGCYC | 1 cut(s) | 32 |
| FaiI | YATR | 2 cut(s) | 171, 184 |
| FriOI | GRGCYC | 1 cut(s) | 32 |
| FspBI | CTAG | 1 cut(s) | 164 |
| HinfI | GANTC | 2 cut(s) | 20, 97 |
| Hpy188I | TCNGA | 1 cut(s) | 34 |
| HpyAV | CCTTC | 1 cut(s) | 194 |
| HpyCH4III | ACNGT | 1 cut(s) | 196 |
| HpyCH4V | TGCA | 1 cut(s) | 72 |
| HpyF3I | CTNAG | 1 cut(s) | 31 |
| Kzo9I | GATC | 1 cut(s) | 116 |
| LpnPI | CCDG | 1 cut(s) | 58 |
| LweI | GCATC | 1 cut(s) | 59 |
| MaeI | CTAG | 1 cut(s) | 164 |
| MalI | GATC | 1 cut(s) | 118 |
| MboI | GATC | 1 cut(s) | 116 |
| MboII | GAAGA | 1 cut(s) | 76 |
| MhlI | GDGCHC | 1 cut(s) | 32 |
| MluCI | AATT | 1 cut(s) | 129 |
| MlyI | GAGTC | 1 cut(s) | 29 |
| MnlI | CCTC | 2 cut(s) | 58, 151 |
| NdeII | GATC | 1 cut(s) | 116 |
| PfeI | GAWTC | 1 cut(s) | 97 |
| PleI | GAGTC | 1 cut(s) | 28 |
| PpsI | GAGTC | 1 cut(s) | 28 |
| Psp124BI | GAGCTC | 1 cut(s) | 32 |
| SacI | GAGCTC | 1 cut(s) | 32 |
| Sau3AI | GATC | 1 cut(s) | 116 |
| SchI | GAGTC | 1 cut(s) | 29 |
| SduI | GDGCHC | 1 cut(s) | 32 |
| SetI | ASST | 4 cut(s) | 32, 143, 165, 205 |
| SfaNI | GCATC | 1 cut(s) | 59 |
| SgeI | CNNG | 6 cut(s) | 61, 85, 102, 121, 169, 176 |
| Sse9I | AATT | 1 cut(s) | 129 |
| SspMI | CTAG | 1 cut(s) | 164 |
| SstI | GAGCTC | 1 cut(s) | 32 |
| TaaI | ACNGT | 1 cut(s) | 196 |
| TaqI | TCGA | 1 cut(s) | 50 |
| TasI | AATT | 1 cut(s) | 129 |
| TfiI | GAWTC | 1 cut(s) | 97 |
| TscAI | CASTG | 1 cut(s) | 30 |
| TspRI | CASTG | 1 cut(s) | 30 |
| XspI | CTAG | 1 cut(s) | 164 |