Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0030911.1

Orthogroup ID

OG0011086

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1908

Gene Structure 1908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0030911.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 496 bp

cctctttgattccttcccttggtcaaatgatttgcaggaggagctagagtggggactttccaaagaaaagcccagaaaccacttggatatgagacaccggttggactcccaaggtcaacggcgaggaaaggtaatcgactacagagtcagtgagctcagagttgttgaactcctcgatggactttgtgataagatgcaggattacactcttcgcaagatagattcaaacagacaagagtggatcaaagtggataattgggataacctcacaacagataaacaagaagctagagcatattcaaaggatatatcaacttactgtggaaggttacttgaggaaacagaagatgagattgcagaattgataaagaaaggatctcttggagtaggagatgtaagcaaggttctatgtcaagatttgagcaaacactgcagcaaaacaagtgcttcacatgaggaaaatgtttctaatggtggatcagatggagaactctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3456

Protein Analysis

164

Amino Acids

18.86

Weight (kDa)

4.99

Isoelectric Point (pI)

33.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011086)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42480 AT1G42480 AT1G42480
fragaria_vesca	FvH4_5g25650 FvH4_5g25650
malus_domestica	MD06G1006600.v1.1
prunus_persica	Prupe.5G008600_v2.0.a1 Prupe.5G008700_v2.0.a1
pyrus_communis	pycom06g00580
rosa_chinensis	RchiOBHm_Chr7g0215941
rosa_laevigata	RLG00000002605
rosa_multiflora	Rmu_co8213036.1_g000001 Rmu_sc0030911.1_g000001
rosa_roxburghii	Rroxscaffold_3G00243760
rosa_rugosa	Rorug07G0157200
rosa_samantha	Rh7AG295200 Rh7BG287200 Rh7CG315300 Rh7DG297900
rosa_wichuraiana	Rw7G025070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	144
AclWI	GGATC	3 cut(s)	249, 383, 485
AfiI	CCNNNNNNNGG	1 cut(s)	19
AgeI	ACCGGT	1 cut(s)	97
AgsI	TTSAA	3 cut(s)	168, 226, 301
AluBI	AGCT	3 cut(s)	44, 155, 288
AluI	AGCT	3 cut(s)	44, 155, 288
Alw21I	GWGCWC	1 cut(s)	157
Alw26I	GTCTC	1 cut(s)	86
AlwI	GGATC	3 cut(s)	249, 383, 485
ApeKI	GCWGC	1 cut(s)	433
AsiGI	ACCGGT	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	157
Bbv12I	GWGCWC	1 cut(s)	157
BbvI	GCAGC	1 cut(s)	445
BccI	CCATC	2 cut(s)	171, 477
BceAI	ACGGC	1 cut(s)	135
BcoDI	GTCTC	1 cut(s)	86
BfaI	CTAG	2 cut(s)	45, 289
BfmI	CTRYAG	2 cut(s)	140, 431
BisI	GCNGC	1 cut(s)	434
BlsI	GCNGC	1 cut(s)	435
BmsI	GCATC	1 cut(s)	184
BpuEI	CTTGAG	1 cut(s)	354
BsaJI	CCNNGG	2 cut(s)	18, 110
BsaWI	WCCGGW	1 cut(s)	97
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bsc4I	CCNNNNNNNGG	1 cut(s)	19
Bse118I	RCCGGY	1 cut(s)	97
BseDI	CCNNGG	2 cut(s)	18, 110
BseLI	CCNNNNNNNGG	1 cut(s)	19
BseMII	CTCAG	1 cut(s)	170
BseRI	GAGGAG	2 cut(s)	54, 162
BseXI	GCAGC	1 cut(s)	445
BshTI	ACCGGT	1 cut(s)	97
BsiHKAI	GWGCWC	1 cut(s)	157
BsiSI	CCGG	1 cut(s)	98
BslFI	GGGAC	1 cut(s)	67
BslI	CCNNNNNNNGG	1 cut(s)	19
BsmAI	GTCTC	1 cut(s)	86
BsmFI	GGGAC	1 cut(s)	67
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp143I	GATC	3 cut(s)	241, 375, 477
BspCNI	CTCAG	1 cut(s)	169
BspMAI	CTGCAG	1 cut(s)	435
BspPI	GGATC	3 cut(s)	249, 383, 485
BsrFI	RCCGGY	1 cut(s)	97
BssAI	RCCGGY	1 cut(s)	97
BssECI	CCNNGG	2 cut(s)	18, 110
BssMI	GATC	3 cut(s)	241, 375, 477
BssT1I	CCWWGG	2 cut(s)	18, 110
Bst4CI	ACNGT	1 cut(s)	321
Bst6I	CTCTTC	1 cut(s)	214
BstAPI	GCANNNNNTGC	1 cut(s)	430
BstDEI	CTNAG	1 cut(s)	156
BstKTI	GATC	3 cut(s)	244, 378, 480
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	3 cut(s)	241, 375, 477
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 430
BstSFI	CTRYAG	2 cut(s)	140, 431
BstV1I	GCAGC	1 cut(s)	445
BstX2I	RGATCY	1 cut(s)	375
BstYI	RGATCY	1 cut(s)	375
BtsI	GCAGTG	1 cut(s)	428
BtsIMutI	CAGTG	2 cut(s)	155, 428
Cfr10I	RCCGGY	1 cut(s)	97
CspAI	ACCGGT	1 cut(s)	97
CviAII	CATG	1 cut(s)	453
CviJI	RGCY	4 cut(s)	44, 71, 155, 288
CviKI_1	RGCY	4 cut(s)	44, 71, 155, 288
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	3 cut(s)	243, 377, 479
DpnII	GATC	3 cut(s)	241, 375, 477
DrdI	GACNNNNNNGTC	1 cut(s)	144
DseDI	GACNNNNNNGTC	1 cut(s)	144
Eam1104I	CTCTTC	1 cut(s)	214
EarI	CTCTTC	1 cut(s)	214
Ecl136II	GAGCTC	1 cut(s)	155
Eco130I	CCWWGG	2 cut(s)	18, 110
Eco24I	GRGCYC	1 cut(s)	157
Eco53kI	GAGCTC	1 cut(s)	155
EcoICRI	GAGCTC	1 cut(s)	155
EcoT14I	CCWWGG	2 cut(s)	18, 110
EcoT38I	GRGCYC	1 cut(s)	157
ErhI	CCWWGG	2 cut(s)	18, 110
FaeI	CATG	1 cut(s)	456
FaiI	YATR	5 cut(s)	90, 296, 309, 410, 454
FalI	AAGNNNNNCTT	2 cut(s)	364, 396
FaqI	GGGAC	1 cut(s)	67
FatI	CATG	1 cut(s)	452
Fnu4HI	GCNGC	1 cut(s)	434
FriOI	GRGCYC	1 cut(s)	157
Fsp4HI	GCNGC	1 cut(s)	434
FspBI	CTAG	2 cut(s)	45, 289
GluI	GCNGC	1 cut(s)	434
HapII	CCGG	1 cut(s)	98
Hin1II	CATG	1 cut(s)	456
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
HinfI	GANTC	4 cut(s)	9, 105, 145, 222
HpaII	CCGG	1 cut(s)	98
Hpy166II	GTNNAC	1 cut(s)	117
Hpy188I	TCNGA	3 cut(s)	159, 482, 495
Hpy188III	TCNNGA	1 cut(s)	414
Hpy8I	GTNNAC	1 cut(s)	117
HpyAV	CCTTC	2 cut(s)	23, 319
HpyCH4III	ACNGT	1 cut(s)	321
HpyCH4V	TGCA	4 cut(s)	35, 197, 357, 433
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 430
HpyF3I	CTNAG	1 cut(s)	156
Hsp92II	CATG	1 cut(s)	456
Kzo9I	GATC	3 cut(s)	241, 375, 477
LmnI	GCTCC	1 cut(s)	41
LpnPI	CCDG	4 cut(s)	21, 86, 111, 183
Lsp1109I	GCAGC	1 cut(s)	445
LweI	GCATC	1 cut(s)	184
MaeI	CTAG	2 cut(s)	45, 289
MaeIII	GTNAC	1 cut(s)	328
MalI	GATC	3 cut(s)	243, 377, 479
MboI	GATC	3 cut(s)	241, 375, 477
MboII	GAAGA	2 cut(s)	201, 357
MflI	RGATCY	1 cut(s)	375
MhlI	GDGCHC	1 cut(s)	157
MluCI	AATT	2 cut(s)	254, 360
MlyI	GAGTC	2 cut(s)	99, 154
MmeI	TCCRAC	1 cut(s)	82
MnlI	CCTC	7 cut(s)	12, 32, 117, 183, 276, 329, 449
MspI	CCGG	1 cut(s)	98
MwoI	GCNNNNNNNGC	2 cut(s)	41, 430
NdeII	GATC	3 cut(s)	241, 375, 477
NlaIII	CATG	1 cut(s)	456
PfeI	GAWTC	2 cut(s)	9, 222
PinAI	ACCGGT	1 cut(s)	97
PkrI	GCNGC	1 cut(s)	435
PleI	GAGTC	2 cut(s)	99, 153
PpsI	GAGTC	2 cut(s)	99, 153
Psp124BI	GAGCTC	1 cut(s)	157
PsrI	GAACNNNNNNTAC	2 cut(s)	388, 420
PstI	CTGCAG	1 cut(s)	435
PsuI	RGATCY	1 cut(s)	375
SacI	GAGCTC	1 cut(s)	157
SatI	GCNGC	1 cut(s)	434
Sau3AI	GATC	3 cut(s)	241, 375, 477
SchI	GAGTC	2 cut(s)	99, 154
SduI	GDGCHC	1 cut(s)	157
SetI	ASST	8 cut(s)	46, 116, 133, 157, 268, 290, 330, 406
SfaNI	GCATC	1 cut(s)	184
SfcI	CTRYAG	2 cut(s)	140, 431
SmlI	CTYRAG	1 cut(s)	333
SmoI	CTYRAG	1 cut(s)	333
Sse9I	AATT	2 cut(s)	254, 360
SspMI	CTAG	2 cut(s)	45, 289
SstI	GAGCTC	1 cut(s)	157
StyI	CCWWGG	2 cut(s)	18, 110
TaaI	ACNGT	1 cut(s)	321
TaqI	TCGA	2 cut(s)	136, 175
TasI	AATT	2 cut(s)	254, 360
TfiI	GAWTC	2 cut(s)	9, 222
TscAI	CASTG	2 cut(s)	155, 435
TseI	GCWGC	1 cut(s)	433
TspRI	CASTG	2 cut(s)	155, 435
XcmI	CCANNNNNNNNNTGG	1 cut(s)	80
XspI	CTAG	2 cut(s)	45, 289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.