TLR4 regulator and MIR-interacting MSAP
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G42480 AT1G42480 AT1G42480 |
| fragaria_vesca | FvH4_5g25650 FvH4_5g25650 |
| malus_domestica | MD06G1006600.v1.1 |
| prunus_persica | Prupe.5G008600_v2.0.a1 Prupe.5G008700_v2.0.a1 |
| pyrus_communis | pycom06g00580 |
| rosa_chinensis | RchiOBHm_Chr7g0215941 |
| rosa_laevigata | RLG00000002605 |
| rosa_multiflora | Rmu_co8213036.1_g000001 Rmu_sc0030911.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00243760 |
| rosa_rugosa | Rorug07G0157200 |
| rosa_samantha | Rh7AG295200 Rh7BG287200 Rh7CG315300 Rh7DG297900 |
| rosa_wichuraiana | Rw7G025070 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 56, 190 |
| AgsI | TTSAA | 2 cut(s) | 33, 108 |
| AluBI | AGCT | 1 cut(s) | 95 |
| AluI | AGCT | 1 cut(s) | 95 |
| Alw21I | GWGCWC | 1 cut(s) | 235 |
| Alw44I | GTGCAC | 1 cut(s) | 231 |
| AlwI | GGATC | 2 cut(s) | 56, 190 |
| ApaLI | GTGCAC | 1 cut(s) | 231 |
| BaeGI | GKGCMC | 1 cut(s) | 235 |
| Bbv12I | GWGCWC | 1 cut(s) | 235 |
| BfmI | CTRYAG | 1 cut(s) | 238 |
| BglII | AGATCT | 1 cut(s) | 223 |
| BmrI | ACTGGG | 1 cut(s) | 73 |
| BmuI | ACTGGG | 1 cut(s) | 73 |
| BpuEI | CTTGAG | 1 cut(s) | 161 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 186, 216 |
| Bse1I | ACTGG | 1 cut(s) | 68 |
| BseMII | CTCAG | 1 cut(s) | 218 |
| BseNI | ACTGG | 1 cut(s) | 68 |
| BseRI | GAGGAG | 2 cut(s) | 207, 210 |
| BseSI | GKGCMC | 1 cut(s) | 235 |
| BsiHKAI | GWGCWC | 1 cut(s) | 235 |
| Bsp1286I | GDGCHC | 1 cut(s) | 235 |
| Bsp143I | GATC | 4 cut(s) | 48, 182, 210, 223 |
| BspCNI | CTCAG | 1 cut(s) | 219 |
| BspPI | GGATC | 2 cut(s) | 56, 190 |
| BsrI | ACTGG | 1 cut(s) | 68 |
| BssMI | GATC | 4 cut(s) | 48, 182, 210, 223 |
| Bst4CI | ACNGT | 1 cut(s) | 239 |
| Bst6I | CTCTTC | 1 cut(s) | 21 |
| BstDEI | CTNAG | 1 cut(s) | 227 |
| BstKTI | GATC | 4 cut(s) | 51, 185, 213, 226 |
| BstMBI | GATC | 4 cut(s) | 48, 182, 210, 223 |
| BstSFI | CTRYAG | 1 cut(s) | 238 |
| BstSLI | GKGCMC | 1 cut(s) | 235 |
| BstX2I | RGATCY | 2 cut(s) | 182, 223 |
| BstYI | RGATCY | 2 cut(s) | 182, 223 |
| BtsIMutI | CAGTG | 1 cut(s) | 235 |
| CviJI | RGCY | 1 cut(s) | 95 |
| CviKI_1 | RGCY | 1 cut(s) | 95 |
| DdeI | CTNAG | 1 cut(s) | 227 |
| DpnI | GATC | 4 cut(s) | 50, 184, 212, 225 |
| DpnII | GATC | 4 cut(s) | 48, 182, 210, 223 |
| Eam1104I | CTCTTC | 1 cut(s) | 21 |
| EarI | CTCTTC | 1 cut(s) | 21 |
| FaiI | YATR | 3 cut(s) | 12, 103, 217 |
| HinfI | GANTC | 1 cut(s) | 29 |
| Hpy166II | GTNNAC | 3 cut(s) | 58, 86, 233 |
| Hpy188I | TCNGA | 1 cut(s) | 228 |
| Hpy188III | TCNNGA | 1 cut(s) | 221 |
| Hpy8I | GTNNAC | 3 cut(s) | 58, 86, 233 |
| HpyCH4III | ACNGT | 1 cut(s) | 239 |
| HpyCH4V | TGCA | 2 cut(s) | 4, 233 |
| HpyF3I | CTNAG | 1 cut(s) | 227 |
| Kzo9I | GATC | 4 cut(s) | 48, 182, 210, 223 |
| LpnPI | CCDG | 2 cut(s) | 49, 229 |
| MalI | GATC | 4 cut(s) | 50, 184, 212, 225 |
| MboI | GATC | 4 cut(s) | 48, 182, 210, 223 |
| MboII | GAAGA | 3 cut(s) | 8, 144, 164 |
| MflI | RGATCY | 2 cut(s) | 182, 223 |
| MhlI | GDGCHC | 1 cut(s) | 235 |
| MnlI | CCTC | 4 cut(s) | 83, 136, 185, 188 |
| NdeII | GATC | 4 cut(s) | 48, 182, 210, 223 |
| PfeI | GAWTC | 1 cut(s) | 29 |
| PsuI | RGATCY | 2 cut(s) | 182, 223 |
| Sau3AI | GATC | 4 cut(s) | 48, 182, 210, 223 |
| SduI | GDGCHC | 1 cut(s) | 235 |
| SetI | ASST | 4 cut(s) | 75, 97, 125, 254 |
| SfcI | CTRYAG | 1 cut(s) | 238 |
| SgeI | CNNG | 7 cut(s) | 17, 34, 76, 101, 152, 220, 233 |
| SmlI | CTYRAG | 1 cut(s) | 140 |
| SmoI | CTYRAG | 1 cut(s) | 140 |
| TaaI | ACNGT | 1 cut(s) | 239 |
| TaqI | TCGA | 1 cut(s) | 119 |
| TfiI | GAWTC | 1 cut(s) | 29 |
| TscAI | CASTG | 1 cut(s) | 242 |
| TspRI | CASTG | 1 cut(s) | 242 |
| VneI | GTGCAC | 1 cut(s) | 231 |