TLR4 regulator and MIR-interacting MSAP
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G42480 AT1G42480 AT1G42480 |
| fragaria_vesca | FvH4_5g25650 FvH4_5g25650 |
| malus_domestica | MD06G1006600.v1.1 |
| prunus_persica | Prupe.5G008600_v2.0.a1 Prupe.5G008700_v2.0.a1 |
| pyrus_communis | pycom06g00580 |
| rosa_chinensis | RchiOBHm_Chr7g0215941 |
| rosa_laevigata | RLG00000002605 |
| rosa_multiflora | Rmu_co8213036.1_g000001 Rmu_sc0030911.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00243760 |
| rosa_rugosa | Rorug07G0157200 |
| rosa_samantha | Rh7AG295200 Rh7BG287200 Rh7CG315300 Rh7DG297900 |
| rosa_wichuraiana | Rw7G025070 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 101 |
| AciI | CCGC | 2 cut(s) | 95, 101 |
| AclWI | GGATC | 2 cut(s) | 314, 448 |
| AcsI | RAATTY | 1 cut(s) | 246 |
| AgsI | TTSAA | 3 cut(s) | 233, 291, 366 |
| AluBI | AGCT | 4 cut(s) | 109, 220, 353, 556 |
| AluI | AGCT | 4 cut(s) | 109, 220, 353, 556 |
| Alw21I | GWGCWC | 4 cut(s) | 111, 222, 493, 558 |
| Alw26I | GTCTC | 1 cut(s) | 151 |
| Alw44I | GTGCAC | 1 cut(s) | 489 |
| AlwI | GGATC | 2 cut(s) | 314, 448 |
| ApaLI | GTGCAC | 1 cut(s) | 489 |
| ApeKI | GCWGC | 1 cut(s) | 83 |
| ApoI | RAATTY | 1 cut(s) | 246 |
| AspLEI | GCGC | 1 cut(s) | 83 |
| AsuHPI | GGTGA | 1 cut(s) | 34 |
| BaeGI | GKGCMC | 1 cut(s) | 493 |
| BanII | GRGCYC | 3 cut(s) | 111, 222, 558 |
| Bbv12I | GWGCWC | 4 cut(s) | 111, 222, 493, 558 |
| BbvI | GCAGC | 1 cut(s) | 70 |
| BccI | CCATC | 3 cut(s) | 10, 74, 236 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 79, 113 |
| BcoDI | GTCTC | 1 cut(s) | 151 |
| BfmI | CTRYAG | 1 cut(s) | 496 |
| BglII | AGATCT | 1 cut(s) | 481 |
| BisI | GCNGC | 1 cut(s) | 84 |
| BlsI | GCNGC | 1 cut(s) | 85 |
| BmrI | ACTGGG | 1 cut(s) | 331 |
| BmsI | GCATC | 2 cut(s) | 249, 526 |
| BmuI | ACTGGG | 1 cut(s) | 331 |
| BpuEI | CTTGAG | 2 cut(s) | 95, 419 |
| Bsa29I | ATCGAT | 2 cut(s) | 69, 201 |
| BsaJI | CCNNGG | 1 cut(s) | 54 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 98, 128, 444, 474 |
| Bse1I | ACTGG | 2 cut(s) | 181, 326 |
| Bse3DI | GCAATG | 2 cut(s) | 97, 512 |
| BseCI | ATCGAT | 2 cut(s) | 69, 201 |
| BseDI | CCNNGG | 1 cut(s) | 54 |
| BseMI | GCAATG | 2 cut(s) | 97, 512 |
| BseMII | CTCAG | 2 cut(s) | 235, 476 |
| BseNI | ACTGG | 2 cut(s) | 181, 326 |
| BseRI | GAGGAG | 5 cut(s) | 21, 119, 227, 465, 468 |
| BseSI | GKGCMC | 1 cut(s) | 493 |
| BseXI | GCAGC | 1 cut(s) | 70 |
| Bsh1236I | CGCG | 1 cut(s) | 101 |
| Bsh1285I | CGRYCG | 1 cut(s) | 99 |
| BshVI | ATCGAT | 2 cut(s) | 69, 201 |
| BsiEI | CGRYCG | 1 cut(s) | 99 |
| BsiHKAI | GWGCWC | 4 cut(s) | 111, 222, 493, 558 |
| BslFI | GGGAC | 1 cut(s) | 132 |
| BsmAI | GTCTC | 1 cut(s) | 151 |
| BsmFI | GGGAC | 1 cut(s) | 132 |
| Bsp1286I | GDGCHC | 4 cut(s) | 111, 222, 493, 558 |
| Bsp143I | GATC | 3 cut(s) | 306, 440, 481 |
| BspACI | CCGC | 2 cut(s) | 95, 101 |
| BspCNI | CTCAG | 2 cut(s) | 234, 477 |
| BspDI | ATCGAT | 2 cut(s) | 69, 201 |
| BspFNI | CGCG | 1 cut(s) | 101 |
| BspPI | GGATC | 2 cut(s) | 314, 448 |
| BsrDI | GCAATG | 2 cut(s) | 97, 512 |
| BsrI | ACTGG | 2 cut(s) | 181, 326 |
| BssECI | CCNNGG | 1 cut(s) | 54 |
| BssMI | GATC | 3 cut(s) | 306, 440, 481 |
| Bst4CI | ACNGT | 1 cut(s) | 497 |
| BstC8I | GCNNGC | 1 cut(s) | 88 |
| BstDEI | CTNAG | 2 cut(s) | 221, 485 |
| BstDSI | CCRYGG | 1 cut(s) | 54 |
| BstFNI | CGCG | 1 cut(s) | 101 |
| BstHHI | GCGC | 1 cut(s) | 83 |
| BstKTI | GATC | 3 cut(s) | 309, 443, 484 |
| BstMAI | GTCTC | 1 cut(s) | 151 |
| BstMBI | GATC | 3 cut(s) | 306, 440, 481 |
| BstMCI | CGRYCG | 1 cut(s) | 99 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 87, 92 |
| BstSFI | CTRYAG | 1 cut(s) | 496 |
| BstSLI | GKGCMC | 1 cut(s) | 493 |
| BstUI | CGCG | 1 cut(s) | 101 |
| BstV1I | GCAGC | 1 cut(s) | 70 |
| BstX2I | RGATCY | 2 cut(s) | 440, 481 |
| BstYI | RGATCY | 2 cut(s) | 440, 481 |
| Bsu15I | ATCGAT | 2 cut(s) | 69, 201 |
| BsuTUI | ATCGAT | 2 cut(s) | 69, 201 |
| BtgI | CCRYGG | 1 cut(s) | 54 |
| BtsIMutI | CAGTG | 3 cut(s) | 174, 220, 493 |
| Cac8I | GCNNGC | 1 cut(s) | 88 |
| CfoI | GCGC | 1 cut(s) | 83 |
| ClaI | ATCGAT | 2 cut(s) | 69, 201 |
| CviJI | RGCY | 5 cut(s) | 59, 109, 220, 353, 556 |
| CviKI_1 | RGCY | 5 cut(s) | 59, 109, 220, 353, 556 |
| DdeI | CTNAG | 2 cut(s) | 221, 485 |
| DpnI | GATC | 3 cut(s) | 308, 442, 483 |
| DpnII | GATC | 3 cut(s) | 306, 440, 481 |
| Ecl136II | GAGCTC | 3 cut(s) | 109, 220, 556 |
| Eco24I | GRGCYC | 3 cut(s) | 111, 222, 558 |
| Eco53kI | GAGCTC | 3 cut(s) | 109, 220, 556 |
| EcoICRI | GAGCTC | 3 cut(s) | 109, 220, 556 |
| EcoT38I | GRGCYC | 3 cut(s) | 111, 222, 558 |
| FaiI | YATR | 5 cut(s) | 155, 270, 361, 475, 534 |
| FaqI | GGGAC | 1 cut(s) | 132 |
| Fnu4HI | GCNGC | 1 cut(s) | 84 |
| FriOI | GRGCYC | 3 cut(s) | 111, 222, 558 |
| Fsp4HI | GCNGC | 1 cut(s) | 84 |
| GlaI | GCGC | 1 cut(s) | 82 |
| GluI | GCNGC | 1 cut(s) | 84 |
| HhaI | GCGC | 1 cut(s) | 83 |
| Hin6I | GCGC | 1 cut(s) | 81 |
| HinP1I | GCGC | 1 cut(s) | 81 |
| HincII | GTYRAC | 1 cut(s) | 182 |
| HindII | GTYRAC | 1 cut(s) | 182 |
| HinfI | GANTC | 4 cut(s) | 170, 210, 287, 542 |
| HphI | GGTGA | 1 cut(s) | 34 |
| Hpy166II | GTNNAC | 3 cut(s) | 182, 344, 491 |
| Hpy188I | TCNGA | 4 cut(s) | 224, 486, 547, 560 |
| Hpy188III | TCNNGA | 1 cut(s) | 479 |
| Hpy8I | GTNNAC | 3 cut(s) | 182, 344, 491 |
| Hpy99I | CGWCG | 1 cut(s) | 551 |
| HpyAV | CCTTC | 1 cut(s) | 187 |
| HpyCH4III | ACNGT | 1 cut(s) | 497 |
| HpyCH4V | TGCA | 5 cut(s) | 90, 262, 491, 512, 517 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 87, 92 |
| HpyF3I | CTNAG | 2 cut(s) | 221, 485 |
| HspAI | GCGC | 1 cut(s) | 81 |
| Kzo9I | GATC | 3 cut(s) | 306, 440, 481 |
| LmnI | GCTCC | 1 cut(s) | 106 |
| LpnPI | CCDG | 6 cut(s) | 151, 162, 248, 307, 487, 506 |
| Lsp1109I | GCAGC | 1 cut(s) | 70 |
| LweI | GCATC | 2 cut(s) | 249, 526 |
| MalI | GATC | 3 cut(s) | 308, 442, 483 |
| MboI | GATC | 3 cut(s) | 306, 440, 481 |
| MboII | GAAGA | 3 cut(s) | 54, 402, 422 |
| MflI | RGATCY | 2 cut(s) | 440, 481 |
| MhlI | GDGCHC | 4 cut(s) | 111, 222, 493, 558 |
| MluCI | AATT | 3 cut(s) | 45, 246, 425 |
| MlyI | GAGTC | 2 cut(s) | 164, 219 |
| MmeI | TCCRAC | 1 cut(s) | 150 |
| MnlI | CCTC | 8 cut(s) | 18, 97, 182, 248, 341, 394, 443, 446 |
| MvnI | CGCG | 1 cut(s) | 101 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 87, 92 |
| NdeII | GATC | 3 cut(s) | 306, 440, 481 |
| PfeI | GAWTC | 2 cut(s) | 287, 542 |
| PkrI | GCNGC | 1 cut(s) | 85 |
| PleI | GAGTC | 2 cut(s) | 164, 218 |
| PpsI | GAGTC | 2 cut(s) | 164, 218 |
| Psp124BI | GAGCTC | 3 cut(s) | 111, 222, 558 |
| PsuI | RGATCY | 2 cut(s) | 440, 481 |
| SacI | GAGCTC | 3 cut(s) | 111, 222, 558 |
| SatI | GCNGC | 1 cut(s) | 84 |
| Sau3AI | GATC | 3 cut(s) | 306, 440, 481 |
| SchI | GAGTC | 2 cut(s) | 164, 219 |
| SduI | GDGCHC | 4 cut(s) | 111, 222, 493, 558 |
| SetI | ASST | 9 cut(s) | 29, 111, 198, 222, 333, 355, 383, 471, 558 |
| SfaNI | GCATC | 2 cut(s) | 249, 526 |
| SfcI | CTRYAG | 1 cut(s) | 496 |
| SmlI | CTYRAG | 2 cut(s) | 110, 398 |
| SmoI | CTYRAG | 2 cut(s) | 110, 398 |
| Sse9I | AATT | 3 cut(s) | 45, 246, 425 |
| SsiI | CCGC | 2 cut(s) | 95, 101 |
| SstI | GAGCTC | 3 cut(s) | 111, 222, 558 |
| TaaI | ACNGT | 1 cut(s) | 497 |
| TaqI | TCGA | 5 cut(s) | 14, 69, 201, 240, 377 |
| TasI | AATT | 3 cut(s) | 45, 246, 425 |
| TfiI | GAWTC | 2 cut(s) | 287, 542 |
| TscAI | CASTG | 3 cut(s) | 181, 220, 500 |
| TseI | GCWGC | 1 cut(s) | 83 |
| TspDTI | ATGAA | 1 cut(s) | 555 |
| TspGWI | ACGGA | 2 cut(s) | 43, 199 |
| TspRI | CASTG | 3 cut(s) | 181, 220, 500 |
| VneI | GTGCAC | 1 cut(s) | 489 |
| XapI | RAATTY | 1 cut(s) | 246 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 145 |