Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009287

Physical Location & Seq

Genomic Coordinates Forward (+)

16963125 .. 16965019

Gene Structure 1895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G44890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGTCGCTCGTCCGTTGTTTATCCCTCAGATCGGTTCTCAATCCTCAACGTTACCGATCATCTTACTCCTTTCTCATCCATCTTCAGAATCCTCGTGAAGAAGAAGAACCTACACACAAAACTCGAAGTTACCACAGTATCATTCACCAGAACTCGTTAATCGGTGCCTCCTCGACGGCTTTCTCTCGCTATCGCTCTGTTTTCCAATCTCCTGCGACGATTTCATCGGATCGATTCATTTCGACTTTCAATTTCTCTGGTTCCGGTGACGCTGTCATCGATTGGTTGTTGCAATCTGTGGTTTCGAGGAGTTATGAGTTACATAATGTTGCTGATGTTCTTGTTTCTCTTAACCATTTGCTTGCATTGTTGAATTCTTTCACATTTTCTCAATGGTGGGTGTTTATCATCGTAGCATCGCTTTTGATTCGAGGAATCACAGTTCCGGTTATGGTTGATATGCTTAACAACATTGCAAAGTTTTTTAAGAGTCTACGCTCGAACCAAGGAGAGGTTCTAGACAAGGTATCATTTCTTAATAAAAGTCGAGGAGTAATGTACACCATGTTGGAGAAGGAGTTTTTTGGAGTTAAAGGATCAGTCATTGGTCAGGGTATTCAAGTTCCTATCTTCTGGTTCTCAATGGGAGAGTTGAAACAAAACATGGTTGAGATTCTTATGTCACGTCTTCGGGGTAAGATTTTGTCGGCGGAATTGATCAAGAACGGAGTCTTAAGCAGAGGACGCTTAGTGGTGGTCGTTGGCGATGGATTCGGGATTGAAATCCAAATGTTCGATCTTGATTTCTCTCTTATCTTGAGGCGTCGTCAAGTCTCGCAAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

60KD_IMP

Protein Analysis

281

Amino Acids

31.88

Weight (kDa)

9.89

Isoelectric Point (pI)

54.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44890 AT5G62050
fragaria_vesca	FvH4_5g04530 FvH4_5g04530 FvH4_5g04530 FvH4_5g04530 FvH4_5g04530
malus_domestica	MD06G1106300.v1.1
prunus_persica	Prupe.5G118500_v2.0.a1
pyrus_communis	pycom06g10060
rosa_chinensis	RchiOBHm_Chr7g0194921
rosa_laevigata	RLG00000004157
rosa_multiflora	Rmu_co8146178.1_g000001 Rmu_ssc0000157.1_g000005
rosa_roxburghii	Rroxscaffold_3G00260890
rosa_rugosa	Rorug07G0019000 Rorug07G0019100
rosa_samantha	Rh7AG146800 Rh7BG147500 Rh7CG150800 Rh7DG148000
rosa_wichuraiana	Rw7G012530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	164
AccI	GTMKAC	1 cut(s)	493
AciI	CCGC	1 cut(s)	710
AclI	AACGTT	1 cut(s)	49
AclWI	GGATC	2 cut(s)	237, 604
AcsI	RAATTY	1 cut(s)	373
AcuI	CTGAAG	1 cut(s)	68
AcyI	GRCGYC	1 cut(s)	823
AfaI	GTAC	1 cut(s)	560
AfiI	CCNNNNNNNGG	2 cut(s)	31, 511
AflII	CTTAAG	1 cut(s)	733
AgsI	TTSAA	5 cut(s)	250, 373, 620, 655, 782
AjiI	CACGTC	1 cut(s)	686
AjuI	GAANNNNNNNTTGG	2 cut(s)	498, 530
AloI	GAACNNNNNNTCC	2 cut(s)	426, 458
AluBI	AGCT	1 cut(s)	843
AluI	AGCT	1 cut(s)	843
Alw26I	GTCTC	1 cut(s)	838
AlwI	GGATC	2 cut(s)	237, 604
ApoI	RAATTY	1 cut(s)	373
Asp700I	GAANNNNTTC	1 cut(s)	377
AsuHPI	GGTGA	2 cut(s)	137, 278
BaeI	ACNNNNGTAYC	2 cut(s)	121, 154
BanI	GGYRCC	1 cut(s)	164
BauI	CACGAG	1 cut(s)	93
BbsI	GAAGAC	1 cut(s)	680
BccI	CCATC	2 cut(s)	87, 761
BceAI	ACGGC	1 cut(s)	192
BclI	TGATCA	1 cut(s)	717
BcoDI	GTCTC	1 cut(s)	838
BfaI	CTAG	1 cut(s)	518
BfrI	CTTAAG	1 cut(s)	733
BmgBI	CACGTC	1 cut(s)	686
BmiI	GGNNCC	2 cut(s)	166, 262
BmsI	GCATC	1 cut(s)	425
BpiI	GAAGAC	1 cut(s)	680
BpuEI	CTTGAG	1 cut(s)	838
Bsa29I	ATCGAT	2 cut(s)	232, 279
BsaBI	GATNNNNATC	1 cut(s)	782
BsaHI	GRCGYC	1 cut(s)	823
BsaJI	CCNNGG	1 cut(s)	505
BsaWI	WCCGGW	2 cut(s)	263, 445
BsaXI	ACNNNNNCTCC	2 cut(s)	563, 593
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 511
Bse3DI	GCAATG	1 cut(s)	471
Bse8I	GATNNNNATC	1 cut(s)	782
BseCI	ATCGAT	2 cut(s)	232, 279
BseDI	CCNNGG	1 cut(s)	505
BseGI	GGATG	1 cut(s)	75
BseJI	GATNNNNATC	1 cut(s)	782
BseLI	CCNNNNNNNGG	2 cut(s)	31, 511
BseMI	GCAATG	1 cut(s)	471
BseMII	CTCAG	1 cut(s)	40
BseRI	GAGGAG	3 cut(s)	160, 322, 564
BshNI	GGYRCC	1 cut(s)	164
BshVI	ATCGAT	2 cut(s)	232, 279
BsiSI	CCGG	2 cut(s)	264, 446
BslI	CCNNNNNNNGG	2 cut(s)	31, 511
BsmAI	GTCTC	1 cut(s)	838
Bsp1407I	TGTACA	1 cut(s)	558
Bsp143I	GATC	6 cut(s)	29, 56, 229, 596, 717, 796
BspACI	CCGC	1 cut(s)	710
BspCNI	CTCAG	1 cut(s)	39
BspDI	ATCGAT	2 cut(s)	232, 279
BspLI	GGNNCC	2 cut(s)	166, 262
BspPI	GGATC	2 cut(s)	237, 604
BspT107I	GGYRCC	1 cut(s)	164
BspTI	CTTAAG	1 cut(s)	733
BsrDI	GCAATG	1 cut(s)	471
BsrGI	TGTACA	1 cut(s)	558
BssECI	CCNNGG	1 cut(s)	505
BssMI	GATC	6 cut(s)	29, 56, 229, 596, 717, 796
BssNI	GRCGYC	1 cut(s)	823
BssSI	CACGAG	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	505
Bst2BI	CACGAG	1 cut(s)	93
Bst4CI	ACNGT	2 cut(s)	137, 442
BstACI	GRCGYC	1 cut(s)	823
BstAFI	CTTAAG	1 cut(s)	733
BstAUI	TGTACA	1 cut(s)	558
BstC8I	GCNNGC	1 cut(s)	363
BstDEI	CTNAG	2 cut(s)	26, 748
BstF5I	GGATG	1 cut(s)	75
BstKTI	GATC	6 cut(s)	32, 59, 232, 599, 720, 799
BstMAI	GTCTC	1 cut(s)	838
BstMBI	GATC	6 cut(s)	29, 56, 229, 596, 717, 796
BstMWI	GCNNNNNNNGC	1 cut(s)	744
BstV2I	GAAGAC	1 cut(s)	680
Bsu15I	ATCGAT	2 cut(s)	232, 279
BsuTUI	ATCGAT	2 cut(s)	232, 279
BtgZI	GCGATG	2 cut(s)	402, 780
BtrI	CACGTC	1 cut(s)	686
BtsCI	GGATG	1 cut(s)	75
Cac8I	GCNNGC	1 cut(s)	363
ClaI	ATCGAT	2 cut(s)	232, 279
CseI	GACGC	3 cut(s)	278, 753, 812
Csp6I	GTAC	1 cut(s)	559
CviAII	CATG	2 cut(s)	565, 664
CviJI	RGCY	2 cut(s)	179, 843
CviKI_1	RGCY	2 cut(s)	179, 843
CviQI	GTAC	1 cut(s)	559
DdeI	CTNAG	2 cut(s)	26, 748
DpnI	GATC	6 cut(s)	31, 58, 231, 598, 719, 798
DpnII	GATC	6 cut(s)	29, 56, 229, 596, 717, 796
EciI	GGCGGA	1 cut(s)	725
Eco130I	CCWWGG	1 cut(s)	505
Eco57I	CTGAAG	1 cut(s)	68
EcoRI	GAATTC	1 cut(s)	373
EcoT14I	CCWWGG	1 cut(s)	505
ErhI	CCWWGG	1 cut(s)	505
FaeI	CATG	2 cut(s)	568, 667
FaiI	YATR	7 cut(s)	315, 324, 452, 461, 566, 665, 680
FatI	CATG	2 cut(s)	564, 663
FbaI	TGATCA	1 cut(s)	717
FblI	GTMKAC	1 cut(s)	493
FokI	GGATG	1 cut(s)	62
FspBI	CTAG	1 cut(s)	518
HapII	CCGG	2 cut(s)	264, 446
HgaI	GACGC	3 cut(s)	278, 753, 812
Hin1I	GRCGYC	1 cut(s)	823
Hin1II	CATG	2 cut(s)	568, 667
HinfI	GANTC	8 cut(s)	88, 234, 427, 435, 490, 673, 729, 771
HpaII	CCGG	2 cut(s)	264, 446
HphI	GGTGA	2 cut(s)	137, 278
Hpy166II	GTNNAC	2 cut(s)	494, 561
Hpy188I	TCNGA	3 cut(s)	29, 87, 229
Hpy188III	TCNNGA	6 cut(s)	95, 518, 721, 775, 800, 817
Hpy8I	GTNNAC	2 cut(s)	494, 561
Hpy99I	CGWCG	3 cut(s)	178, 220, 828
HpyAV	CCTTC	1 cut(s)	568
HpyCH4III	ACNGT	2 cut(s)	137, 442
HpyCH4IV	ACGT	2 cut(s)	49, 685
HpyCH4V	TGCA	3 cut(s)	292, 365, 476
HpyF10VI	GCNNNNNNNGC	1 cut(s)	744
HpyF3I	CTNAG	2 cut(s)	26, 748
HpySE526I	ACGT	2 cut(s)	49, 685
Hsp92I	GRCGYC	1 cut(s)	823
Hsp92II	CATG	2 cut(s)	568, 667
Ksp22I	TGATCA	1 cut(s)	717
Kzo9I	GATC	6 cut(s)	29, 56, 229, 596, 717, 796
LpnPI	CCDG	7 cut(s)	161, 225, 243, 277, 459, 596, 619
LweI	GCATC	1 cut(s)	425
MaeI	CTAG	1 cut(s)	518
MaeII	ACGT	2 cut(s)	49, 685
MaeIII	GTNAC	5 cut(s)	50, 128, 266, 318, 681
MalI	GATC	6 cut(s)	31, 58, 231, 598, 719, 798
MboI	GATC	6 cut(s)	29, 56, 229, 596, 717, 796
MboII	GAAGA	6 cut(s)	74, 110, 113, 116, 622, 680
MluCI	AATT	3 cut(s)	250, 373, 713
MlyI	GAGTC	2 cut(s)	499, 738
MmeI	TCCRAC	1 cut(s)	549
MroXI	GAANNNNTTC	1 cut(s)	377
MseI	TTAA	7 cut(s)	158, 351, 465, 486, 537, 591, 734
MspCI	CTTAAG	1 cut(s)	733
MspI	CCGG	2 cut(s)	264, 446
MwoI	GCNNNNNNNGC	1 cut(s)	744
NdeII	GATC	6 cut(s)	29, 56, 229, 596, 717, 796
NlaIII	CATG	2 cut(s)	568, 667
NlaIV	GGNNCC	2 cut(s)	166, 262
NmuCI	GTSAC	2 cut(s)	266, 681
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PdmI	GAANNNNTTC	1 cut(s)	377
PfeI	GAWTC	6 cut(s)	88, 234, 427, 435, 673, 771
PflFI	GACNNNGTC	1 cut(s)	272
PleI	GAGTC	2 cut(s)	498, 737
PpsI	GAGTC	2 cut(s)	498, 737
Psp1406I	AACGTT	1 cut(s)	49
PspN4I	GGNNCC	2 cut(s)	166, 262
PsyI	GACNNNGTC	1 cut(s)	272
RsaI	GTAC	1 cut(s)	560
RsaNI	GTAC	1 cut(s)	559
SaqAI	TTAA	7 cut(s)	158, 351, 465, 486, 537, 591, 734
Sau3AI	GATC	6 cut(s)	29, 56, 229, 596, 717, 796
SchI	GAGTC	2 cut(s)	499, 738
SetI	ASST	6 cut(s)	52, 112, 516, 528, 688, 845
SfaNI	GCATC	1 cut(s)	425
SmlI	CTYRAG	2 cut(s)	733, 817
SmoI	CTYRAG	2 cut(s)	733, 817
Sse9I	AATT	3 cut(s)	250, 373, 713
SsiI	CCGC	1 cut(s)	710
SspMI	CTAG	1 cut(s)	518
StyI	CCWWGG	1 cut(s)	505
TaaI	ACNGT	2 cut(s)	137, 442
TaiI	ACGT	2 cut(s)	52, 688
TasI	AATT	3 cut(s)	250, 373, 713
TatI	WGTACW	1 cut(s)	558
TfiI	GAWTC	6 cut(s)	88, 234, 427, 435, 673, 771
Tru1I	TTAA	7 cut(s)	158, 351, 465, 486, 537, 591, 734
Tru9I	TTAA	7 cut(s)	158, 351, 465, 486, 537, 591, 734
TseFI	GTSAC	2 cut(s)	266, 681
Tsp45I	GTSAC	2 cut(s)	266, 681
TspDTI	ATGAA	2 cut(s)	213, 226
TspGWI	ACGGA	1 cut(s)	741
Tth111I	GACNNNGTC	1 cut(s)	272
Vha464I	CTTAAG	1 cut(s)	733
XapI	RAATTY	1 cut(s)	373
XbaI	TCTAGA	1 cut(s)	517
XmiI	GTMKAC	1 cut(s)	493
XmnI	GAANNNNTTC	1 cut(s)	377
XspI	CTAG	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.