Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0009287

Physical Location & Seq

Genomic Coordinates Reverse (-)

11958865 .. 11963354

Gene Structure 4490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G118500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGGCTTACTGGAGAAGCCTCTCCACCAGAGCGAGCTTTACAGCTCGACGACGACAGAACCATCCGTCCATCACTCACATTCTCCACGACGACGACCGCAAGCACGACGTCGTTTCTGAACAAGCTTCTTCGCCGAATTTGAATCATTTTCTCAGCCAAAAGCGATTTTTCGGGAACAATTTGGGCAGAATATCGGGTTTTGGCGGTTTTGCTCCAGACAGGAGGATTTCAAATGCTCTGCTTTCTTCCAGTTCTGGGTTCGCGTGCTCTCGATATATGTCGACGGCGATTGGTGGCGGTTCCGATAAGGTAGAGCTGTTGAGTGATGTATCGGGGGTTGTATCGGACGCGACGATGGAAGCCGTGGCTTCTCAGGTCTCGGCAATGAGCGAAATTGCAATTGCCACTGCAGACTCGTGGCTGCCGGTTAAGGCCTTGCAGTACTTGATTGGTTCGGTGCATACTTATACTGGCTTGAACTGGTGGGCTGCCATAGCAATAACAACTCTTTTGATTCGAACAGCCACGGTTCCAATTCTAATTAATCAACTTAAAGCAATGTCAAAGCTCGCTCTCATGAAACCTCAACTGGAGGAATACAGGCAAGAGATGCAAGACAAGGGTATGGGTCGTGAGGCTGTGGCTGAATTTCAAAAGAAAACGGGGAAGCTATATAAGGAATATGGCGTCCATCCATTATCTGCAATGAAGGGAATTTTTGTTCAAGCTCCTGTCTTCATCAGTTTTTTCCTTGCTATAAGTAACATGGCAGAGAAAGTGCCATCCTTTAAAAGTGGTGGCGCCTACTGGTTTCTTGATCTGACAACTCCAGATAGCATGTACATTTTTCCAGTTTTGGCAGCATTGACATTCTTACTAACCGTGGAGTGCAATCTGCAAGAAGGTATGGAGGGAAATCCTGCTGCTGGCACCATGAAAAATGTTTCAAGAGGCCTTGCTGTTCTTACAGTTCCATTTACCATGAGCTTTCCAAAGGCTGTATTTTGTTACTGGGTTACATCCAACATGTTTTCGCTTGGGTATGGACTGGTGCTTAAATATTCTGGGCTGAAGAAGGCCTTGGGTATTCCTCGGCTGCCTAGTACTCCTCCATCACAACGATCACAACCCGCATTTTCACTGTTATCCACAATGAAACAAGTCGCTGCAGTGACTCAGGATACAACCTCATCACCTGTTGAACAATCAAAGGTTCAAGACGGAAGAACGTCATCGTCATCAGTTCTCAGTCAAAGGATTAAAACTTTAGAGAAACAAGTGAAGGGAAGAAAGAGAAACAAGAAGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

60KD_IMP

Protein Analysis

437

Amino Acids

47.84

Weight (kDa)

9.83

Isoelectric Point (pI)

48.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44890 AT5G62050
fragaria_vesca	FvH4_5g04530 FvH4_5g04530 FvH4_5g04530 FvH4_5g04530 FvH4_5g04530
malus_domestica	MD06G1106300.v1.1
prunus_persica	Prupe.5G118500_v2.0.a1
pyrus_communis	pycom06g10060
rosa_chinensis	RchiOBHm_Chr7g0194921
rosa_laevigata	RLG00000004157
rosa_multiflora	Rmu_co8146178.1_g000001 Rmu_ssc0000157.1_g000005
rosa_roxburghii	Rroxscaffold_3G00260890
rosa_rugosa	Rorug07G0019000 Rorug07G0019100
rosa_samantha	Rh7AG146800 Rh7BG147500 Rh7CG150800 Rh7DG148000
rosa_wichuraiana	Rw7G012530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	111
AccB1I	GGYRCC	2 cut(s)	800, 929
AccI	GTMKAC	1 cut(s)	281
AccII	CGCG	2 cut(s)	263, 350
AciI	CCGC	4 cut(s)	97, 204, 297, 1131
AcsI	RAATTY	3 cut(s)	136, 647, 714
AcuI	CTGAAG	1 cut(s)	1091
AcyI	GRCGYC	3 cut(s)	108, 687, 801
AfaI	GTAC	3 cut(s)	443, 842, 1105
AfiI	CCNNNNNNNGG	2 cut(s)	255, 926
AflIII	ACRYGT	1 cut(s)	1026
AgsI	TTSAA	8 cut(s)	142, 231, 478, 653, 725, 948, 1202, 1217
AjuI	GAANNNNNNNTTGG	2 cut(s)	1064, 1096
AloI	GAACNNNNNNTCC	4 cut(s)	50, 82, 705, 737
AluBI	AGCT	8 cut(s)	36, 44, 125, 316, 568, 670, 728, 987
AluI	AGCT	8 cut(s)	36, 44, 125, 316, 568, 670, 728, 987
Alw21I	GWGCWC	1 cut(s)	269
Alw26I	GTCTC	1 cut(s)	382
AoxI	GGCC	3 cut(s)	432, 952, 1077
ApeKI	GCWGC	6 cut(s)	421, 488, 860, 923, 1096, 1166
ApoI	RAATTY	3 cut(s)	136, 647, 714
AseI	ATTAAT	1 cut(s)	543
AspLEI	GCGC	1 cut(s)	803
AsuHPI	GGTGA	1 cut(s)	1185
AsuII	TTCGAA	1 cut(s)	517
BanI	GGYRCC	2 cut(s)	800, 929
BauI	CACGAG	1 cut(s)	415
BbsI	GAAGAC	1 cut(s)	727
Bbv12I	GWGCWC	1 cut(s)	269
BbvI	GCAGC	6 cut(s)	408, 475, 872, 910, 1083, 1153
BccI	CCATC	6 cut(s)	69, 77, 349, 699, 790, 1120
BceAI	ACGGC	2 cut(s)	300, 347
BciVI	GTATCC	1 cut(s)	1174
BcoDI	GTCTC	1 cut(s)	382
BfaI	CTAG	1 cut(s)	1101
BfmI	CTRYAG	2 cut(s)	408, 1167
BfoI	RGCGCY	1 cut(s)	804
BfuI	GTATCC	1 cut(s)	1174
BisI	GCNGC	6 cut(s)	422, 489, 861, 924, 1097, 1167
BlsI	GCNGC	6 cut(s)	423, 490, 862, 925, 1098, 1168
BmcAI	AGTACT	2 cut(s)	443, 1105
BmiI	GGNNCC	4 cut(s)	301, 531, 802, 931
BmrI	ACTGGG	1 cut(s)	1021
BmsI	GCATC	1 cut(s)	600
BmuI	ACTGGG	1 cut(s)	1021
BpiI	GAAGAC	1 cut(s)	727
BpmI	CTGGAG	4 cut(s)	31, 198, 611, 813
Bpu14I	TTCGAA	1 cut(s)	517
BsaHI	GRCGYC	3 cut(s)	108, 687, 801
BsaI	GGTCTC	1 cut(s)	382
BsaJI	CCNNGG	5 cut(s)	363, 525, 882, 1080, 1091
Bsc4I	CCNNNNNNNGG	2 cut(s)	255, 926
Bse118I	RCCGGY	1 cut(s)	424
Bse1I	ACTGG	9 cut(s)	14, 249, 475, 485, 594, 812, 851, 1016, 1053
Bse3DI	GCAATG	3 cut(s)	390, 564, 711
BseDI	CCNNGG	5 cut(s)	363, 525, 882, 1080, 1091
BseGI	GGATG	4 cut(s)	61, 691, 782, 1019
BseLI	CCNNNNNNNGG	2 cut(s)	255, 926
BseMI	GCAATG	3 cut(s)	390, 564, 711
BseMII	CTCAG	4 cut(s)	166, 386, 1190, 1261
BseNI	ACTGG	9 cut(s)	14, 249, 475, 485, 594, 812, 851, 1016, 1053
BseRI	GAGGAG	1 cut(s)	1098
BseXI	GCAGC	6 cut(s)	408, 475, 872, 910, 1083, 1153
Bsh1236I	CGCG	2 cut(s)	263, 350
Bsh1285I	CGRYCG	1 cut(s)	97
BshFI	GGCC	3 cut(s)	434, 954, 1079
BshNI	GGYRCC	2 cut(s)	800, 929
BsiEI	CGRYCG	1 cut(s)	97
BsiHKAI	GWGCWC	1 cut(s)	269
BsiSI	CCGG	1 cut(s)	425
BslI	CCNNNNNNNGG	2 cut(s)	255, 926
BsmAI	GTCTC	1 cut(s)	382
BsnI	GGCC	3 cut(s)	434, 954, 1079
Bso31I	GGTCTC	1 cut(s)	382
Bsp119I	TTCGAA	1 cut(s)	517
Bsp1286I	GDGCHC	1 cut(s)	269
Bsp1407I	TGTACA	1 cut(s)	840
Bsp143I	GATC	2 cut(s)	817, 1121
BspACI	CCGC	4 cut(s)	97, 204, 297, 1131
BspANI	GGCC	3 cut(s)	434, 954, 1079
BspCNI	CTCAG	4 cut(s)	165, 385, 1189, 1260
BspFNI	CGCG	2 cut(s)	263, 350
BspHI	TCATGA	1 cut(s)	576
BspLI	GGNNCC	4 cut(s)	301, 531, 802, 931
BspMAI	CTGCAG	2 cut(s)	412, 1171
BspT104I	TTCGAA	1 cut(s)	517
BspT107I	GGYRCC	2 cut(s)	800, 929
BspTNI	GGTCTC	1 cut(s)	382
BsrDI	GCAATG	3 cut(s)	390, 564, 711
BsrFI	RCCGGY	1 cut(s)	424
BsrGI	TGTACA	1 cut(s)	840
BsrI	ACTGG	9 cut(s)	14, 249, 475, 485, 594, 812, 851, 1016, 1053
BssAI	RCCGGY	1 cut(s)	424
BssECI	CCNNGG	5 cut(s)	363, 525, 882, 1080, 1091
BssMI	GATC	2 cut(s)	817, 1121
BssNI	GRCGYC	3 cut(s)	108, 687, 801
BssSI	CACGAG	1 cut(s)	415
BssT1I	CCWWGG	1 cut(s)	1080
Bst2BI	CACGAG	1 cut(s)	415
Bst4CI	ACNGT	4 cut(s)	529, 883, 970, 1143
Bst6I	CTCTTC	1 cut(s)	1298
BstACI	GRCGYC	3 cut(s)	108, 687, 801
BstAPI	GCANNNNNTGC	1 cut(s)	610
BstAUI	TGTACA	1 cut(s)	840
BstBI	TTCGAA	1 cut(s)	517
BstC8I	GCNNGC	5 cut(s)	34, 101, 265, 570, 928
BstDEI	CTNAG	4 cut(s)	152, 372, 1176, 1247
BstDSI	CCRYGG	3 cut(s)	363, 525, 882
BstF5I	GGATG	4 cut(s)	61, 691, 782, 1019
BstFNI	CGCG	2 cut(s)	263, 350
BstH2I	RGCGCY	1 cut(s)	804
BstHHI	GCGC	1 cut(s)	803
BstKTI	GATC	2 cut(s)	820, 1124
BstMAI	GTCTC	1 cut(s)	382
BstMBI	GATC	2 cut(s)	817, 1121
BstMCI	CGRYCG	1 cut(s)	97
BstMWI	GCNNNNNNNGC	2 cut(s)	494, 610
BstNSI	RCATGY	2 cut(s)	841, 1030
BstSFI	CTRYAG	2 cut(s)	408, 1167
BstUI	CGCG	2 cut(s)	263, 350
BstV1I	GCAGC	6 cut(s)	408, 475, 872, 910, 1083, 1153
BstV2I	GAAGAC	1 cut(s)	727
BsuI	GTATCC	1 cut(s)	1174
BsuRI	GGCC	3 cut(s)	434, 954, 1079
BtgI	CCRYGG	3 cut(s)	363, 525, 882
BtsCI	GGATG	4 cut(s)	61, 691, 782, 1019
BtsI	GCAGTG	2 cut(s)	405, 1176
BtsIMutI	CAGTG	3 cut(s)	405, 1139, 1176
Cac8I	GCNNGC	5 cut(s)	34, 101, 265, 570, 928
CciI	TCATGA	1 cut(s)	576
CfoI	GCGC	1 cut(s)	803
Cfr10I	RCCGGY	1 cut(s)	424
CseI	GACGC	2 cut(s)	356, 676
Csp6I	GTAC	3 cut(s)	442, 841, 1104
CviAII	CATG	6 cut(s)	577, 766, 838, 934, 982, 1027
CviQI	GTAC	3 cut(s)	442, 841, 1104
DdeI	CTNAG	4 cut(s)	152, 372, 1176, 1247
DinI	GGCGCC	1 cut(s)	802
DpnI	GATC	2 cut(s)	819, 1123
DpnII	GATC	2 cut(s)	817, 1121
DraI	TTTAAA	1 cut(s)	790
Eam1104I	CTCTTC	1 cut(s)	1298
EarI	CTCTTC	1 cut(s)	1298
Eco130I	CCWWGG	1 cut(s)	1080
Eco147I	AGGCCT	3 cut(s)	434, 954, 1079
Eco31I	GGTCTC	1 cut(s)	382
Eco57I	CTGAAG	1 cut(s)	1091
EcoT14I	CCWWGG	1 cut(s)	1080
EgeI	GGCGCC	1 cut(s)	802
EheI	GGCGCC	1 cut(s)	802
ErhI	CCWWGG	1 cut(s)	1080
FaeI	CATG	6 cut(s)	580, 769, 841, 937, 985, 1030
FalI	AAGNNNNNCTT	2 cut(s)	1064, 1096
FatI	CATG	6 cut(s)	576, 765, 837, 933, 981, 1026
FauI	CCCGC	1 cut(s)	1138
FblI	GTMKAC	1 cut(s)	281
Fnu4HI	GCNGC	6 cut(s)	422, 489, 861, 924, 1097, 1167
FokI	GGATG	4 cut(s)	48, 678, 769, 1006
Fsp4HI	GCNGC	6 cut(s)	422, 489, 861, 924, 1097, 1167
FspBI	CTAG	1 cut(s)	1101
GlaI	GCGC	1 cut(s)	802
GluI	GCNGC	6 cut(s)	422, 489, 861, 924, 1097, 1167
GsuI	CTGGAG	4 cut(s)	31, 198, 611, 813
HaeII	RGCGCY	1 cut(s)	804
HaeIII	GGCC	3 cut(s)	434, 954, 1079
HapII	CCGG	1 cut(s)	425
HgaI	GACGC	2 cut(s)	356, 676
HhaI	GCGC	1 cut(s)	803
Hin1I	GRCGYC	3 cut(s)	108, 687, 801
Hin1II	CATG	6 cut(s)	580, 769, 841, 937, 985, 1030
Hin6I	GCGC	1 cut(s)	801
HinP1I	GCGC	1 cut(s)	801
HincII	GTYRAC	1 cut(s)	282
HindII	GTYRAC	1 cut(s)	282
HindIII	AAGCTT	1 cut(s)	123
HinfI	GANTC	4 cut(s)	142, 413, 514, 1174
HpaII	CCGG	1 cut(s)	425
HphI	GGTGA	1 cut(s)	1185
Hpy166II	GTNNAC	1 cut(s)	282
Hpy188I	TCNGA	4 cut(s)	118, 304, 346, 822
Hpy8I	GTNNAC	1 cut(s)	282
Hpy99I	CGWCG	8 cut(s)	51, 54, 92, 95, 110, 113, 286, 355
HpyAV	CCTTC	4 cut(s)	703, 896, 1069, 1276
HpyCH4III	ACNGT	4 cut(s)	529, 883, 970, 1143
HpyCH4IV	ACGT	2 cut(s)	108, 1229
HpyCH4V	TGCA	9 cut(s)	398, 410, 439, 460, 613, 704, 891, 898, 1169
HpyF10VI	GCNNNNNNNGC	2 cut(s)	494, 610
HpyF3I	CTNAG	4 cut(s)	152, 372, 1176, 1247
HpySE526I	ACGT	2 cut(s)	108, 1229
Hsp92I	GRCGYC	3 cut(s)	108, 687, 801
Hsp92II	CATG	6 cut(s)	580, 769, 841, 937, 985, 1030
HspAI	GCGC	1 cut(s)	801
KasI	GGCGCC	1 cut(s)	800
Kzo9I	GATC	2 cut(s)	817, 1121
LmnI	GCTCC	2 cut(s)	217, 733
Lsp1109I	GCAGC	6 cut(s)	408, 475, 872, 910, 1083, 1153
LweI	GCATC	1 cut(s)	600
MaeI	CTAG	1 cut(s)	1101
MaeII	ACGT	2 cut(s)	108, 1229
MaeIII	GTNAC	4 cut(s)	761, 1007, 1015, 1171
MalI	GATC	2 cut(s)	819, 1123
MboI	GATC	2 cut(s)	817, 1121
MboII	GAAGA	6 cut(s)	120, 237, 727, 1084, 1236, 1299
MfeI	CAATTG	1 cut(s)	399
MhlI	GDGCHC	1 cut(s)	269
MluCI	AATT	8 cut(s)	136, 178, 393, 399, 534, 540, 647, 714
Mly113I	GGCGCC	1 cut(s)	801
MlyI	GAGTC	2 cut(s)	407, 1168
MmeI	TCCRAC	1 cut(s)	1047
MseI	TTAA	6 cut(s)	429, 543, 552, 789, 1056, 1260
MspI	CCGG	1 cut(s)	425
MunI	CAATTG	1 cut(s)	399
MvnI	CGCG	2 cut(s)	263, 350
MwoI	GCNNNNNNNGC	2 cut(s)	494, 610
NarI	GGCGCC	1 cut(s)	801
NdeII	GATC	2 cut(s)	817, 1121
NlaIII	CATG	6 cut(s)	580, 769, 841, 937, 985, 1030
NlaIV	GGNNCC	4 cut(s)	301, 531, 802, 931
NmeAIII	GCCGAG	2 cut(s)	359, 1072
NmuCI	GTSAC	1 cut(s)	1171
NspI	RCATGY	2 cut(s)	841, 1030
NspV	TTCGAA	1 cut(s)	517
PagI	TCATGA	1 cut(s)	576
PceI	AGGCCT	3 cut(s)	434, 954, 1079
PciI	ACATGT	1 cut(s)	1026
PcsI	WCGNNNNNNNCGW	1 cut(s)	350
PfeI	GAWTC	2 cut(s)	142, 514
PkrI	GCNGC	6 cut(s)	423, 490, 862, 925, 1098, 1168
PleI	GAGTC	2 cut(s)	407, 1168
PluTI	GGCGCC	1 cut(s)	804
PpsI	GAGTC	2 cut(s)	407, 1168
PscI	ACATGT	1 cut(s)	1026
PshBI	ATTAAT	1 cut(s)	543
PspN4I	GGNNCC	4 cut(s)	301, 531, 802, 931
PstI	CTGCAG	2 cut(s)	412, 1171
RsaI	GTAC	3 cut(s)	443, 842, 1105
RsaNI	GTAC	3 cut(s)	442, 841, 1104
SalI	GTCGAC	1 cut(s)	280
SaqAI	TTAA	6 cut(s)	429, 543, 552, 789, 1056, 1260
SatI	GCNGC	6 cut(s)	422, 489, 861, 924, 1097, 1167
Sau3AI	GATC	2 cut(s)	817, 1121
ScaI	AGTACT	2 cut(s)	443, 1105
SchI	GAGTC	2 cut(s)	407, 1168
SduI	GDGCHC	1 cut(s)	269
SfaNI	GCATC	1 cut(s)	600
SfcI	CTRYAG	2 cut(s)	408, 1167
SfoI	GGCGCC	1 cut(s)	802
SfuI	TTCGAA	1 cut(s)	517
Sse9I	AATT	8 cut(s)	136, 178, 393, 399, 534, 540, 647, 714
SseBI	AGGCCT	3 cut(s)	434, 954, 1079
SsiI	CCGC	4 cut(s)	97, 204, 297, 1131
SspDI	GGCGCC	1 cut(s)	800
SspI	AATATT	1 cut(s)	1061
SspMI	CTAG	1 cut(s)	1101
StuI	AGGCCT	3 cut(s)	434, 954, 1079
StyI	CCWWGG	1 cut(s)	1080
TaaI	ACNGT	4 cut(s)	529, 883, 970, 1143
TaiI	ACGT	2 cut(s)	111, 1232
TaqI	TCGA	4 cut(s)	46, 271, 281, 517
TasI	AATT	8 cut(s)	136, 178, 393, 399, 534, 540, 647, 714
TatI	WGTACW	3 cut(s)	441, 840, 1103
TfiI	GAWTC	2 cut(s)	142, 514
Tru1I	TTAA	6 cut(s)	429, 543, 552, 789, 1056, 1260
Tru9I	TTAA	6 cut(s)	429, 543, 552, 789, 1056, 1260
TscAI	CASTG	3 cut(s)	412, 1146, 1176
TseFI	GTSAC	1 cut(s)	1171
TseI	GCWGC	6 cut(s)	421, 488, 860, 923, 1096, 1166
Tsp45I	GTSAC	1 cut(s)	1171
TspDTI	ATGAA	5 cut(s)	593, 722, 727, 950, 1169
TspGWI	ACGGA	2 cut(s)	54, 1236
TspRI	CASTG	3 cut(s)	412, 1146, 1176
VspI	ATTAAT	1 cut(s)	543
XapI	RAATTY	3 cut(s)	136, 647, 714
XceI	RCATGY	2 cut(s)	841, 1030
XmiI	GTMKAC	1 cut(s)	281
XspI	CTAG	1 cut(s)	1101
ZraI	GACGTC	1 cut(s)	109
ZrmI	AGTACT	2 cut(s)	443, 1105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.