Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0009287

Physical Location & Seq

Genomic Coordinates Forward (+)

11881231 .. 11885904

Gene Structure 4674 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G012530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGCTTACTGGCGGGGCCTCTCGTCCAGAGCGAGCATCATTGCTCGGCGAAAGCAGCACCATCCCTGCATCTCTCACATTCTCCACGACGACGACGTCGTTTCGGAACCCTCTCCTTCCCCAAATACCAATCATTTCCTCACCCAAAAGCGGTTCTTCAGTTTGGATAGTAAAGTTTCAGGCTTTGGTGGGTTTGCTCAGAATCGGAGGATTTCAAATGCTCTGCTTTCGTCGCCGCCGGCTGGATTCGGGTTTGCTCGGAATATGTCGACGGCGGGCGGGGGAGGGGCGGATAAGATTGGGTTGTTCAGTGATGTGCCGGAGATTCTGTCGGACACGACGGTGCAAGCTGTGACTTCGCAGCTGCCGGTGGTGAATGAGGTGGCGATTGCGGCGGCTGATTCCTACTTGCCGGTTAAGGGCTTGCAGTACTTGATTGATTATGTCCATACTACTGCTGGGTTGAGCTGGTGGGCTGCCATTGTGGTAACAACTCTTTTTATTCGAAGCTGCACGGTTCCGCTTCTAGTAAACCAACTTAAAGCAACGGCAAAACTCACTCTTATGAGGCCACGTCTAGAGGAACTTAAGCAAGAGATGGAAGAAAAGGGTATGGATCTCGGAGCTAAGATTGAATATCAAAAGAAAATTAAGATGCTATTCAAGGAATATGGCTGTAGTCCCTTAACTCCACTAAAGGGACTCTTTATTCAAGCTCCTGTCTTCATCAGCTTTTTCCTAGCAATATCGAACATGGCAGAGAAGGTGCCATCGTTTAAAGATGGTGGTGCCTATTGGTTTGTTGATCTGACAACTCCTGATCCTATGTACATTTTTCCAGTTTTGGCAGGATTGACATTCTTAATAACTGTGGAGTGCAATCTGCAAGAAGGTATGGAGGGAAATCCTGTTGCTAAAACCATGAAGAATGTTTCAAGAGGCATGGCTGTTCTTACAGTTCCATTTACCATGGGCTTTCCAAAGGGTGGAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

60KD_IMP

Protein Analysis

331

Amino Acids

36.18

Weight (kDa)

8.93

Isoelectric Point (pI)

47.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
60KD_IMP	PF02096	157 - 327	6.4e-21	60Kd inner membrane protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44890 AT5G62050
fragaria_vesca	FvH4_5g04530 FvH4_5g04530 FvH4_5g04530 FvH4_5g04530 FvH4_5g04530
malus_domestica	MD06G1106300.v1.1
prunus_persica	Prupe.5G118500_v2.0.a1
pyrus_communis	pycom06g10060
rosa_chinensis	RchiOBHm_Chr7g0194921
rosa_laevigata	RLG00000004157
rosa_multiflora	Rmu_co8146178.1_g000001 Rmu_ssc0000157.1_g000005
rosa_roxburghii	Rroxscaffold_3G00260890
rosa_rugosa	Rorug07G0019000 Rorug07G0019100
rosa_samantha	Rh7AG146800 Rh7BG147500 Rh7CG150800 Rh7DG148000
rosa_wichuraiana	Rw7G012530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	95
AatII	GACGTC	1 cut(s)	99
AccB1I	GGYRCC	2 cut(s)	766, 788
AccB7I	CCANNNNNTGG	1 cut(s)	986
AccI	GTMKAC	1 cut(s)	269
AciI	CCGC	9 cut(s)	13, 151, 236, 275, 279, 290, 392, 395, 521
AclWI	GGATC	2 cut(s)	624, 815
AcuI	CTGAAG	1 cut(s)	142
AcyI	GRCGYC	1 cut(s)	96
AfaI	GTAC	2 cut(s)	431, 830
AfiI	CCNNNNNNNGG	5 cut(s)	150, 242, 419, 698, 986
AflII	CTTAAG	1 cut(s)	587
AgsI	TTSAA	5 cut(s)	216, 635, 664, 713, 936
AjiI	CACGTC	1 cut(s)	575
AleI	CACNNNNGTG	1 cut(s)	341
AluBI	AGCT	7 cut(s)	350, 364, 468, 510, 626, 716, 732
AluI	AGCT	7 cut(s)	350, 364, 468, 510, 626, 716, 732
AlwI	GGATC	2 cut(s)	624, 815
AoxI	GGCC	2 cut(s)	16, 569
ApeKI	GCWGC	5 cut(s)	55, 361, 364, 476, 510
AspS9I	GGNCC	1 cut(s)	16
AsuHPI	GGTGA	2 cut(s)	133, 385
AsuII	TTCGAA	1 cut(s)	505
BanI	GGYRCC	2 cut(s)	766, 788
BbsI	GAAGAC	1 cut(s)	715
BbvI	GCAGC	5 cut(s)	67, 351, 373, 463, 497
BccI	CCATC	4 cut(s)	69, 592, 776, 778
BceAI	ACGGC	2 cut(s)	288, 564
BfaI	CTAG	3 cut(s)	527, 578, 740
BfmI	CTRYAG	1 cut(s)	676
BfrI	CTTAAG	1 cut(s)	587
BisI	GCNGC	8 cut(s)	56, 236, 362, 365, 393, 396, 477, 511
BlsI	GCNGC	8 cut(s)	57, 237, 363, 366, 394, 397, 478, 512
BmcAI	AGTACT	1 cut(s)	431
BmgBI	CACGTC	1 cut(s)	575
BmgT120I	GGNCC	1 cut(s)	16
BmiI	GGNNCC	5 cut(s)	17, 108, 519, 768, 790
BmsI	GCATC	3 cut(s)	45, 78, 645
BpiI	GAAGAC	1 cut(s)	715
Bpu14I	TTCGAA	1 cut(s)	505
BsaHI	GRCGYC	1 cut(s)	96
BsaJI	CCNNGG	1 cut(s)	969
BsaXI	ACNNNNNCTCC	2 cut(s)	314, 344
Bsc4I	CCNNNNNNNGG	5 cut(s)	150, 242, 419, 698, 986
Bse118I	RCCGGY	3 cut(s)	238, 367, 412
Bse1I	ACTGG	2 cut(s)	14, 839
Bse3DI	GCAATG	1 cut(s)	39
BseDI	CCNNGG	1 cut(s)	969
BseGI	GGATG	1 cut(s)	61
BseLI	CCNNNNNNNGG	5 cut(s)	150, 242, 419, 698, 986
BseMI	GCAATG	1 cut(s)	39
BseMII	CTCAG	1 cut(s)	212
BseNI	ACTGG	2 cut(s)	14, 839
BseXI	GCAGC	5 cut(s)	67, 351, 373, 463, 497
BseYI	CCCAGC	1 cut(s)	458
BsgI	GTGCAG	1 cut(s)	496
BshFI	GGCC	2 cut(s)	18, 571
BshNI	GGYRCC	2 cut(s)	766, 788
BsiSI	CCGG	4 cut(s)	239, 320, 368, 413
BslFI	GGGAC	2 cut(s)	666, 714
BslI	CCNNNNNNNGG	5 cut(s)	150, 242, 419, 698, 986
BsmFI	GGGAC	2 cut(s)	666, 714
BsnI	GGCC	2 cut(s)	18, 571
Bsp119I	TTCGAA	1 cut(s)	505
Bsp1407I	TGTACA	1 cut(s)	828
Bsp143I	GATC	3 cut(s)	616, 805, 820
Bsp19I	CCATGG	1 cut(s)	969
BspACI	CCGC	9 cut(s)	13, 151, 236, 275, 279, 290, 392, 395, 521
BspANI	GGCC	2 cut(s)	18, 571
BspCNI	CTCAG	1 cut(s)	211
BspLI	GGNNCC	5 cut(s)	17, 108, 519, 768, 790
BspPI	GGATC	2 cut(s)	624, 815
BspT104I	TTCGAA	1 cut(s)	505
BspT107I	GGYRCC	2 cut(s)	766, 788
BspTI	CTTAAG	1 cut(s)	587
BsrDI	GCAATG	1 cut(s)	39
BsrFI	RCCGGY	3 cut(s)	238, 367, 412
BsrGI	TGTACA	1 cut(s)	828
BsrI	ACTGG	2 cut(s)	14, 839
BssAI	RCCGGY	3 cut(s)	238, 367, 412
BssECI	CCNNGG	1 cut(s)	969
BssMI	GATC	3 cut(s)	616, 805, 820
BssNI	GRCGYC	1 cut(s)	96
BssT1I	CCWWGG	1 cut(s)	969
Bst4CI	ACNGT	4 cut(s)	343, 517, 871, 958
BstACI	GRCGYC	1 cut(s)	96
BstAFI	CTTAAG	1 cut(s)	587
BstAUI	TGTACA	1 cut(s)	828
BstBI	TTCGAA	1 cut(s)	505
BstC8I	GCNNGC	5 cut(s)	34, 240, 277, 348, 425
BstDEI	CTNAG	2 cut(s)	198, 627
BstDSI	CCRYGG	1 cut(s)	969
BstF5I	GGATG	1 cut(s)	61
BstKTI	GATC	3 cut(s)	619, 808, 823
BstMBI	GATC	3 cut(s)	616, 805, 820
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 232, 392
BstSFI	CTRYAG	1 cut(s)	676
BstV1I	GCAGC	5 cut(s)	67, 351, 373, 463, 497
BstV2I	GAAGAC	1 cut(s)	715
BstX2I	RGATCY	1 cut(s)	616
BstYI	RGATCY	1 cut(s)	616
BsuRI	GGCC	2 cut(s)	18, 571
BtgI	CCRYGG	1 cut(s)	969
BtrI	CACGTC	1 cut(s)	575
BtsCI	GGATG	1 cut(s)	61
BtsIMutI	CAGTG	1 cut(s)	316
Cac8I	GCNNGC	5 cut(s)	34, 240, 277, 348, 425
Cfr10I	RCCGGY	3 cut(s)	238, 367, 412
Cfr13I	GGNCC	1 cut(s)	16
Csp6I	GTAC	2 cut(s)	430, 829
CviAII	CATG	4 cut(s)	754, 922, 943, 970
CviQI	GTAC	2 cut(s)	430, 829
DdeI	CTNAG	2 cut(s)	198, 627
DpnI	GATC	3 cut(s)	618, 807, 822
DpnII	GATC	3 cut(s)	616, 805, 820
DraI	TTTAAA	1 cut(s)	778
DrdI	GACNNNNNNGTC	1 cut(s)	95
DseDI	GACNNNNNNGTC	1 cut(s)	95
EciI	GGCGGA	1 cut(s)	305
Eco130I	CCWWGG	1 cut(s)	969
Eco57I	CTGAAG	1 cut(s)	142
EcoO109I	RGGNCCY	1 cut(s)	16
EcoT14I	CCWWGG	1 cut(s)	969
ErhI	CCWWGG	1 cut(s)	969
FaeI	CATG	4 cut(s)	757, 925, 946, 973
FalI	AAGNNNNNCTT	4 cut(s)	140, 172, 689, 721
FaqI	GGGAC	2 cut(s)	666, 714
FatI	CATG	4 cut(s)	753, 921, 942, 969
FauI	CCCGC	3 cut(s)	6, 268, 272
FblI	GTMKAC	1 cut(s)	269
Fnu4HI	GCNGC	8 cut(s)	56, 236, 362, 365, 393, 396, 477, 511
FokI	GGATG	1 cut(s)	48
Fsp4HI	GCNGC	8 cut(s)	56, 236, 362, 365, 393, 396, 477, 511
FspBI	CTAG	3 cut(s)	527, 578, 740
GluI	GCNGC	8 cut(s)	56, 236, 362, 365, 393, 396, 477, 511
GsaI	CCCAGC	1 cut(s)	462
HaeIII	GGCC	2 cut(s)	18, 571
HapII	CCGG	4 cut(s)	239, 320, 368, 413
Hin1I	GRCGYC	1 cut(s)	96
Hin1II	CATG	4 cut(s)	757, 925, 946, 973
HincII	GTYRAC	1 cut(s)	270
HindII	GTYRAC	1 cut(s)	270
HinfI	GANTC	5 cut(s)	202, 246, 325, 401, 702
HpaII	CCGG	4 cut(s)	239, 320, 368, 413
HphI	GGTGA	2 cut(s)	133, 385
Hpy166II	GTNNAC	2 cut(s)	270, 532
Hpy188I	TCNGA	7 cut(s)	106, 201, 207, 261, 334, 623, 810
Hpy188III	TCNNGA	4 cut(s)	27, 578, 818, 936
Hpy8I	GTNNAC	2 cut(s)	270, 532
Hpy99I	CGWCG	7 cut(s)	92, 95, 98, 101, 235, 274, 343
HpyAV	CCTTC	3 cut(s)	126, 757, 884
HpyCH4III	ACNGT	4 cut(s)	343, 517, 871, 958
HpyCH4IV	ACGT	2 cut(s)	96, 574
HpyCH4V	TGCA	6 cut(s)	69, 346, 427, 513, 879, 886
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 232, 392
HpyF3I	CTNAG	2 cut(s)	198, 627
HpySE526I	ACGT	2 cut(s)	96, 574
Hsp92I	GRCGYC	1 cut(s)	96
Hsp92II	CATG	4 cut(s)	757, 925, 946, 973
KroI	GCCGGC	1 cut(s)	238
KroNI	GCCGGC	1 cut(s)	240
Kzo9I	GATC	3 cut(s)	616, 805, 820
LmnI	GCTCC	2 cut(s)	623, 721
Lsp1109I	GCAGC	5 cut(s)	67, 351, 373, 463, 497
LweI	GCATC	3 cut(s)	45, 78, 645
MaeI	CTAG	3 cut(s)	527, 578, 740
MaeII	ACGT	2 cut(s)	96, 574
MaeIII	GTNAC	2 cut(s)	352, 487
MalI	GATC	3 cut(s)	618, 807, 822
MboI	GATC	3 cut(s)	616, 805, 820
MboII	GAAGA	4 cut(s)	148, 614, 715, 937
MflI	RGATCY	1 cut(s)	616
MluCI	AATT	1 cut(s)	648
MlyI	GAGTC	1 cut(s)	696
MmeI	TCCRAC	1 cut(s)	312
MroNI	GCCGGC	1 cut(s)	238
MseI	TTAA	7 cut(s)	417, 540, 588, 651, 686, 777, 863
MslI	CAYNNNNRTG	2 cut(s)	341, 563
MspA1I	CMGCKG	1 cut(s)	364
MspCI	CTTAAG	1 cut(s)	587
MspI	CCGG	4 cut(s)	239, 320, 368, 413
MwoI	GCNNNNNNNGC	3 cut(s)	55, 232, 392
NaeI	GCCGGC	1 cut(s)	240
NcoI	CCATGG	1 cut(s)	969
NdeII	GATC	3 cut(s)	616, 805, 820
NgoMIV	GCCGGC	1 cut(s)	238
NlaIII	CATG	4 cut(s)	757, 925, 946, 973
NlaIV	GGNNCC	5 cut(s)	17, 108, 519, 768, 790
NmeAIII	GCCGAG	1 cut(s)	25
NmuCI	GTSAC	1 cut(s)	352
NspV	TTCGAA	1 cut(s)	505
OliI	CACNNNNGTG	1 cut(s)	341
PcsI	WCGNNNNNNNCGW	3 cut(s)	29, 93, 96
PdiI	GCCGGC	1 cut(s)	240
PfeI	GAWTC	4 cut(s)	202, 246, 325, 401
PflFI	GACNNNGTC	1 cut(s)	95
PflMI	CCANNNNNTGG	1 cut(s)	986
PkrI	GCNGC	8 cut(s)	57, 237, 363, 366, 394, 397, 478, 512
PleI	GAGTC	1 cut(s)	696
PpsI	GAGTC	1 cut(s)	696
PspFI	CCCAGC	1 cut(s)	458
PspN4I	GGNNCC	5 cut(s)	17, 108, 519, 768, 790
PspPI	GGNCC	1 cut(s)	16
PsuI	RGATCY	1 cut(s)	616
PsyI	GACNNNGTC	1 cut(s)	95
PvuII	CAGCTG	1 cut(s)	364
RsaI	GTAC	2 cut(s)	431, 830
RsaNI	GTAC	2 cut(s)	430, 829
RseI	CAYNNNNRTG	2 cut(s)	341, 563
SalI	GTCGAC	1 cut(s)	268
SaqAI	TTAA	7 cut(s)	417, 540, 588, 651, 686, 777, 863
SatI	GCNGC	8 cut(s)	56, 236, 362, 365, 393, 396, 477, 511
Sau3AI	GATC	3 cut(s)	616, 805, 820
Sau96I	GGNCC	1 cut(s)	16
ScaI	AGTACT	1 cut(s)	431
SchI	GAGTC	1 cut(s)	696
SfaNI	GCATC	3 cut(s)	45, 78, 645
SfcI	CTRYAG	1 cut(s)	676
SfuI	TTCGAA	1 cut(s)	505
SmiMI	CAYNNNNRTG	2 cut(s)	341, 563
SmlI	CTYRAG	1 cut(s)	587
SmoI	CTYRAG	1 cut(s)	587
Sse9I	AATT	1 cut(s)	648
SsiI	CCGC	9 cut(s)	13, 151, 236, 275, 279, 290, 392, 395, 521
SspMI	CTAG	3 cut(s)	527, 578, 740
StyI	CCWWGG	1 cut(s)	969
TaaI	ACNGT	4 cut(s)	343, 517, 871, 958
TaiI	ACGT	2 cut(s)	99, 577
TaqI	TCGA	3 cut(s)	269, 505, 749
TasI	AATT	1 cut(s)	648
TatI	WGTACW	2 cut(s)	429, 828
TauI	GCSGC	3 cut(s)	238, 395, 398
TfiI	GAWTC	4 cut(s)	202, 246, 325, 401
Tru1I	TTAA	7 cut(s)	417, 540, 588, 651, 686, 777, 863
Tru9I	TTAA	7 cut(s)	417, 540, 588, 651, 686, 777, 863
TscAI	CASTG	1 cut(s)	316
TseFI	GTSAC	1 cut(s)	352
TseI	GCWGC	5 cut(s)	55, 361, 364, 476, 510
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	2 cut(s)	715, 938
TspRI	CASTG	1 cut(s)	316
Tth111I	GACNNNGTC	1 cut(s)	95
Van91I	CCANNNNNTGG	1 cut(s)	986
Vha464I	CTTAAG	1 cut(s)	587
XbaI	TCTAGA	1 cut(s)	577
XcmI	CCANNNNNNNNNTGG	1 cut(s)	455
XmiI	GTMKAC	1 cut(s)	269
XspI	CTAG	3 cut(s)	527, 578, 740
ZraI	GACGTC	1 cut(s)	97
ZrmI	AGTACT	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.