Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8146178.1

Orthogroup ID

OG0009287

Physical Location & Seq

Genomic Coordinates Reverse (-)

11 .. 502

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8146178.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atggcttactggcggggcctctcgtccagagcgagcatcattgctcggcgaaagcagcaccatccctgcatctctcacattctccacgacgacgacgtcgtttcggaaccctctccttccccaaataccaatcatttcctcacccaaaagcggttcttcagtttggatagtaaagcttcaggctttggtgggtttgctcagaatcggaggatttcaaatgctctgctttcgtcgccgccggctggattcgggtttgctcggaatatgtcgacggcgggcgggggaggggcggataagattgggttgttcagtgatgtgccggagattctgtcggacacgacggtgcaagctgtgacttcgcagctgccggtggtgaatgaggtggcgattgcggcggctgattcctacttgccggttaagggcttgcagtacttgattgattatgtccatactactgctgggttgagctggttagttgctatttgtttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

60KD_IMP

Protein Analysis

163

Amino Acids

17.52

Weight (kDa)

7.86

Isoelectric Point (pI)

55.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44890 AT5G62050
fragaria_vesca	FvH4_5g04530 FvH4_5g04530 FvH4_5g04530 FvH4_5g04530 FvH4_5g04530
malus_domestica	MD06G1106300.v1.1
prunus_persica	Prupe.5G118500_v2.0.a1
pyrus_communis	pycom06g10060
rosa_chinensis	RchiOBHm_Chr7g0194921
rosa_laevigata	RLG00000004157
rosa_multiflora	Rmu_co8146178.1_g000001 Rmu_ssc0000157.1_g000005
rosa_roxburghii	Rroxscaffold_3G00260890
rosa_rugosa	Rorug07G0019000 Rorug07G0019100
rosa_samantha	Rh7AG146800 Rh7BG147500 Rh7CG150800 Rh7DG148000
rosa_wichuraiana	Rw7G012530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	95
AatII	GACGTC	1 cut(s)	99
AccI	GTMKAC	1 cut(s)	269
AciI	CCGC	8 cut(s)	13, 151, 236, 275, 279, 290, 392, 395
AcuI	CTGAAG	2 cut(s)	142, 162
AcyI	GRCGYC	1 cut(s)	96
AfaI	GTAC	1 cut(s)	431
AfiI	CCNNNNNNNGG	3 cut(s)	150, 242, 419
AgsI	TTSAA	1 cut(s)	216
AleI	CACNNNNGTG	1 cut(s)	341
AluBI	AGCT	4 cut(s)	176, 350, 364, 468
AluI	AGCT	4 cut(s)	176, 350, 364, 468
AoxI	GGCC	1 cut(s)	16
ApeKI	GCWGC	3 cut(s)	55, 361, 364
AspS9I	GGNCC	1 cut(s)	16
AsuHPI	GGTGA	2 cut(s)	133, 385
BbvI	GCAGC	3 cut(s)	67, 351, 373
BccI	CCATC	1 cut(s)	69
BceAI	ACGGC	1 cut(s)	288
BisI	GCNGC	6 cut(s)	56, 236, 362, 365, 393, 396
BlsI	GCNGC	6 cut(s)	57, 237, 363, 366, 394, 397
BmcAI	AGTACT	1 cut(s)	431
BmgT120I	GGNCC	1 cut(s)	16
BmiI	GGNNCC	2 cut(s)	17, 108
BmsI	GCATC	2 cut(s)	45, 78
BsaHI	GRCGYC	1 cut(s)	96
BsaXI	ACNNNNNCTCC	2 cut(s)	314, 344
Bsc4I	CCNNNNNNNGG	3 cut(s)	150, 242, 419
Bse118I	RCCGGY	3 cut(s)	238, 367, 412
Bse1I	ACTGG	1 cut(s)	14
Bse3DI	GCAATG	1 cut(s)	39
BseGI	GGATG	1 cut(s)	61
BseLI	CCNNNNNNNGG	3 cut(s)	150, 242, 419
BseMI	GCAATG	1 cut(s)	39
BseMII	CTCAG	1 cut(s)	212
BseNI	ACTGG	1 cut(s)	14
BseXI	GCAGC	3 cut(s)	67, 351, 373
BseYI	CCCAGC	1 cut(s)	458
BshFI	GGCC	1 cut(s)	18
BsiSI	CCGG	4 cut(s)	239, 320, 368, 413
BslI	CCNNNNNNNGG	3 cut(s)	150, 242, 419
BsnI	GGCC	1 cut(s)	18
BspACI	CCGC	8 cut(s)	13, 151, 236, 275, 279, 290, 392, 395
BspANI	GGCC	1 cut(s)	18
BspCNI	CTCAG	1 cut(s)	211
BspLI	GGNNCC	2 cut(s)	17, 108
BsrDI	GCAATG	1 cut(s)	39
BsrFI	RCCGGY	3 cut(s)	238, 367, 412
BsrI	ACTGG	1 cut(s)	14
BssAI	RCCGGY	3 cut(s)	238, 367, 412
BssNI	GRCGYC	1 cut(s)	96
Bst4CI	ACNGT	1 cut(s)	343
BstACI	GRCGYC	1 cut(s)	96
BstC8I	GCNNGC	5 cut(s)	34, 240, 277, 348, 425
BstDEI	CTNAG	1 cut(s)	198
BstF5I	GGATG	1 cut(s)	61
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 232, 392
BstV1I	GCAGC	3 cut(s)	67, 351, 373
BsuRI	GGCC	1 cut(s)	18
BtsCI	GGATG	1 cut(s)	61
BtsIMutI	CAGTG	1 cut(s)	316
Cac8I	GCNNGC	5 cut(s)	34, 240, 277, 348, 425
Cfr10I	RCCGGY	3 cut(s)	238, 367, 412
Cfr13I	GGNCC	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	430
CviQI	GTAC	1 cut(s)	430
DdeI	CTNAG	1 cut(s)	198
DrdI	GACNNNNNNGTC	1 cut(s)	95
DseDI	GACNNNNNNGTC	1 cut(s)	95
EciI	GGCGGA	1 cut(s)	305
Eco57I	CTGAAG	2 cut(s)	142, 162
EcoO109I	RGGNCCY	1 cut(s)	16
FaiI	YATR	3 cut(s)	266, 444, 450
FalI	AAGNNNNNCTT	2 cut(s)	140, 172
FauI	CCCGC	3 cut(s)	6, 268, 272
FblI	GTMKAC	1 cut(s)	269
Fnu4HI	GCNGC	6 cut(s)	56, 236, 362, 365, 393, 396
FokI	GGATG	1 cut(s)	48
Fsp4HI	GCNGC	6 cut(s)	56, 236, 362, 365, 393, 396
GluI	GCNGC	6 cut(s)	56, 236, 362, 365, 393, 396
GsaI	CCCAGC	1 cut(s)	462
HaeIII	GGCC	1 cut(s)	18
HapII	CCGG	4 cut(s)	239, 320, 368, 413
Hin1I	GRCGYC	1 cut(s)	96
HincII	GTYRAC	1 cut(s)	270
HindII	GTYRAC	1 cut(s)	270
HindIII	AAGCTT	1 cut(s)	174
HinfI	GANTC	4 cut(s)	202, 246, 325, 401
HpaII	CCGG	4 cut(s)	239, 320, 368, 413
HphI	GGTGA	2 cut(s)	133, 385
Hpy166II	GTNNAC	1 cut(s)	270
Hpy188I	TCNGA	6 cut(s)	106, 201, 207, 261, 334, 491
Hpy188III	TCNNGA	1 cut(s)	27
Hpy8I	GTNNAC	1 cut(s)	270
Hpy99I	CGWCG	7 cut(s)	92, 95, 98, 101, 235, 274, 343
HpyAV	CCTTC	1 cut(s)	126
HpyCH4III	ACNGT	1 cut(s)	343
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	3 cut(s)	69, 346, 427
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 232, 392
HpyF3I	CTNAG	1 cut(s)	198
HpySE526I	ACGT	1 cut(s)	96
Hsp92I	GRCGYC	1 cut(s)	96
KroI	GCCGGC	1 cut(s)	238
KroNI	GCCGGC	1 cut(s)	240
Lsp1109I	GCAGC	3 cut(s)	67, 351, 373
LweI	GCATC	2 cut(s)	45, 78
MaeII	ACGT	1 cut(s)	96
MaeIII	GTNAC	1 cut(s)	352
MboII	GAAGA	1 cut(s)	148
MmeI	TCCRAC	1 cut(s)	312
MnlI	CCTC	6 cut(s)	29, 121, 149, 201, 278, 373
MroNI	GCCGGC	1 cut(s)	238
MseI	TTAA	1 cut(s)	417
MslI	CAYNNNNRTG	1 cut(s)	341
MspA1I	CMGCKG	1 cut(s)	364
MspI	CCGG	4 cut(s)	239, 320, 368, 413
MwoI	GCNNNNNNNGC	3 cut(s)	55, 232, 392
NaeI	GCCGGC	1 cut(s)	240
NgoMIV	GCCGGC	1 cut(s)	238
NlaIV	GGNNCC	2 cut(s)	17, 108
NmeAIII	GCCGAG	1 cut(s)	25
NmuCI	GTSAC	1 cut(s)	352
OliI	CACNNNNGTG	1 cut(s)	341
PcsI	WCGNNNNNNNCGW	3 cut(s)	29, 93, 96
PdiI	GCCGGC	1 cut(s)	240
PfeI	GAWTC	4 cut(s)	202, 246, 325, 401
PflFI	GACNNNGTC	1 cut(s)	95
PkrI	GCNGC	6 cut(s)	57, 237, 363, 366, 394, 397
PspFI	CCCAGC	1 cut(s)	458
PspN4I	GGNNCC	2 cut(s)	17, 108
PspPI	GGNCC	1 cut(s)	16
PsyI	GACNNNGTC	1 cut(s)	95
PvuII	CAGCTG	1 cut(s)	364
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
RseI	CAYNNNNRTG	1 cut(s)	341
SalI	GTCGAC	1 cut(s)	268
SaqAI	TTAA	1 cut(s)	417
SatI	GCNGC	6 cut(s)	56, 236, 362, 365, 393, 396
Sau96I	GGNCC	1 cut(s)	16
ScaI	AGTACT	1 cut(s)	431
SetI	ASST	6 cut(s)	99, 178, 352, 366, 384, 470
SfaNI	GCATC	2 cut(s)	45, 78
SmiMI	CAYNNNNRTG	1 cut(s)	341
SsiI	CCGC	8 cut(s)	13, 151, 236, 275, 279, 290, 392, 395
TaaI	ACNGT	1 cut(s)	343
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	1 cut(s)	269
TatI	WGTACW	1 cut(s)	429
TauI	GCSGC	3 cut(s)	238, 395, 398
TfiI	GAWTC	4 cut(s)	202, 246, 325, 401
Tru1I	TTAA	1 cut(s)	417
Tru9I	TTAA	1 cut(s)	417
TscAI	CASTG	1 cut(s)	316
TseFI	GTSAC	1 cut(s)	352
TseI	GCWGC	3 cut(s)	55, 361, 364
Tsp45I	GTSAC	1 cut(s)	352
TspRI	CASTG	1 cut(s)	316
Tth111I	GACNNNGTC	1 cut(s)	95
XcmI	CCANNNNNNNNNTGG	1 cut(s)	455
XmiI	GTMKAC	1 cut(s)	269
ZraI	GACGTC	1 cut(s)	97
ZrmI	AGTACT	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.