Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0009287

Physical Location & Seq

Genomic Coordinates Reverse (-)

2666296 .. 2671141

Gene Structure 4846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g04530.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGCTTACTGGCGAGGCCTCTCGTCTAGAGCCACCATCGTAGCTCGGCGAAAGCAGCACCATCCCTTTATCTATCACCTACACGACAACGACGTCGTTTCGGAGCCCTCTCCTTCCCCGAACACCAATCATTTCCTGACCCAAAAGCGCTTCTTTGGAAGCACTTTGGATTATAAAGTTTCGGGCTTTGGGGGGTTTGGTCGGAATCAGAGGGTTTCTAATGCTTTGCTTTTGTCGGCGGCGGGATTTGGGTTTGGTCGGAATATGTCAACGGCGAGTGGGGGAGGGTTTGGTGATGTCCCGGAGCTTCTGTCGGAAGCTGTTACCAAACAGCTGCCGGCGGTGAATGAGGTGGCGATTGCGGCGGCTGATTCTTACTTGCCGGTGAAGGGCTTGCAGTACTTGATTGATTATGTTCACACTACATCTGGGTTGAACTGGTGGGCTGCCATAGTGGTAACAACTCTTTTGATTCGGAGCTGCACGGTTCCTCTCCTAGTGAACCAACTTAAAGCAACCGCAAAACTCACTCTCATGAGGCCACGCCTTGAGGAACTTAAGGAAGAGATGGAAAGCAAGGGTATGGATCTTGAAGCTAAGCTTGAATATCAAAAGAAAATTAAGATGCTGTTCAAGGAATATGGCTGTAGTCCTTTAACTCCACTGAAGGGACTCTTTATACAAGCTCCTGTGTTCATCAGCTTTTTCCTAGCAATATCGAATATGGCAGAGAAAGTGCCATCGTTTAAAGATGGCGGTGCCTATTGGTTTGTGGATCTGACAACTCCTGATCCTATGTACATATTTCCAATTTTGGCAGGATTGACATTCTTAATAACTGTGGAGTGCAATCTGCAAGAAGGTATGGAGGGAAATCCTGTTGCTAAAACCATGAAGAATGTTTCAAGAGGCATGGCAGTTCTTACAGTTCCATTTACTATGAGTTTCCCAAAGGGTGGAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

60KD_IMP

Protein Analysis

322

Amino Acids

35.36

Weight (kDa)

9.1

Isoelectric Point (pI)

42.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
60KD_IMP	PF02096	147 - 322	2.8e-22	60Kd inner membrane protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44890 AT5G62050
fragaria_vesca	FvH4_5g04530 FvH4_5g04530 FvH4_5g04530 FvH4_5g04530 FvH4_5g04530
malus_domestica	MD06G1106300.v1.1
prunus_persica	Prupe.5G118500_v2.0.a1
pyrus_communis	pycom06g10060
rosa_chinensis	RchiOBHm_Chr7g0194921
rosa_laevigata	RLG00000004157
rosa_multiflora	Rmu_co8146178.1_g000001 Rmu_ssc0000157.1_g000005
rosa_roxburghii	Rroxscaffold_3G00260890
rosa_rugosa	Rorug07G0019000 Rorug07G0019100
rosa_samantha	Rh7AG146800 Rh7BG147500 Rh7CG150800 Rh7DG148000
rosa_wichuraiana	Rw7G012530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	174
AasI	GACNNNNNNGTC	1 cut(s)	92
AatII	GACGTC	1 cut(s)	96
AccB1I	GGYRCC	1 cut(s)	758
AccB7I	CCANNNNNTGG	1 cut(s)	956
AciI	CCGC	7 cut(s)	239, 242, 341, 362, 365, 519, 756
AclWI	GGATC	3 cut(s)	594, 783, 785
AcuI	CTGAAG	1 cut(s)	686
AcyI	GRCGYC	1 cut(s)	93
AfaI	GTAC	2 cut(s)	401, 800
AfeI	AGCGCT	1 cut(s)	149
AfiI	CCNNNNNNNGG	3 cut(s)	389, 668, 956
AflII	CTTAAG	1 cut(s)	557
AgsI	TTSAA	5 cut(s)	436, 593, 605, 634, 906
AluBI	AGCT	9 cut(s)	44, 307, 320, 334, 480, 596, 601, 686, 702
AluI	AGCT	9 cut(s)	44, 307, 320, 334, 480, 596, 601, 686, 702
AlwI	GGATC	3 cut(s)	594, 783, 785
Aor51HI	AGCGCT	1 cut(s)	149
AoxI	GGCC	2 cut(s)	16, 539
ApeKI	GCWGC	4 cut(s)	55, 334, 446, 480
AspLEI	GCGC	1 cut(s)	150
AsuC2I	CCSGG	1 cut(s)	302
AsuHPI	GGTGA	4 cut(s)	68, 305, 355, 397
BanI	GGYRCC	1 cut(s)	758
BanII	GRGCYC	1 cut(s)	108
BbvI	GCAGC	4 cut(s)	67, 321, 433, 467
BccI	CCATC	5 cut(s)	44, 69, 562, 746, 748
BceAI	ACGGC	1 cut(s)	288
BcnI	CCSGG	1 cut(s)	302
BfaI	CTAG	3 cut(s)	27, 497, 710
BfmI	CTRYAG	1 cut(s)	646
BfoI	RGCGCY	1 cut(s)	151
BfrI	CTTAAG	1 cut(s)	557
BisI	GCNGC	7 cut(s)	56, 240, 335, 363, 366, 447, 481
BlpI	GCTNAGC	1 cut(s)	597
BlsI	GCNGC	7 cut(s)	57, 241, 336, 364, 367, 448, 482
BmcAI	AGTACT	1 cut(s)	401
Bme1390I	CCNGG	1 cut(s)	302
BmiI	GGNNCC	3 cut(s)	105, 489, 760
BmrFI	CCNGG	1 cut(s)	302
BmsI	GCATC	1 cut(s)	615
Bpu1102I	GCTNAGC	1 cut(s)	597
BpuEI	CTTGAG	1 cut(s)	569
BpuMI	CCSGG	1 cut(s)	302
BsaHI	GRCGYC	1 cut(s)	93
BsaXI	ACNNNNNCTCC	2 cut(s)	296, 326
Bsc4I	CCNNNNNNNGG	3 cut(s)	389, 668, 956
Bse118I	RCCGGY	2 cut(s)	337, 382
Bse1I	ACTGG	2 cut(s)	14, 443
BseGI	GGATG	1 cut(s)	61
BseLI	CCNNNNNNNGG	3 cut(s)	389, 668, 956
BseNI	ACTGG	2 cut(s)	14, 443
BseXI	GCAGC	4 cut(s)	67, 321, 433, 467
BsgI	GTGCAG	1 cut(s)	466
BshFI	GGCC	2 cut(s)	18, 541
BshNI	GGYRCC	1 cut(s)	758
BsiSI	CCGG	3 cut(s)	302, 338, 383
BslFI	GGGAC	2 cut(s)	284, 684
BslI	CCNNNNNNNGG	3 cut(s)	389, 668, 956
BsmFI	GGGAC	2 cut(s)	284, 684
BsnI	GGCC	2 cut(s)	18, 541
Bsp1286I	GDGCHC	1 cut(s)	108
Bsp1407I	TGTACA	1 cut(s)	798
Bsp143I	GATC	3 cut(s)	586, 775, 790
Bsp1720I	GCTNAGC	1 cut(s)	597
BspACI	CCGC	7 cut(s)	239, 242, 341, 362, 365, 519, 756
BspANI	GGCC	2 cut(s)	18, 541
BspHI	TCATGA	1 cut(s)	534
BspLI	GGNNCC	3 cut(s)	105, 489, 760
BspPI	GGATC	3 cut(s)	594, 783, 785
BspT107I	GGYRCC	1 cut(s)	758
BspTI	CTTAAG	1 cut(s)	557
BsrFI	RCCGGY	2 cut(s)	337, 382
BsrGI	TGTACA	1 cut(s)	798
BsrI	ACTGG	2 cut(s)	14, 443
BssAI	RCCGGY	2 cut(s)	337, 382
BssMI	GATC	3 cut(s)	586, 775, 790
BssNI	GRCGYC	1 cut(s)	93
Bst4CI	ACNGT	3 cut(s)	487, 841, 928
Bst6I	CTCTTC	1 cut(s)	558
BstACI	GRCGYC	1 cut(s)	93
BstAFI	CTTAAG	1 cut(s)	557
BstAUI	TGTACA	1 cut(s)	798
BstC8I	GCNNGC	2 cut(s)	339, 395
BstDEI	CTNAG	1 cut(s)	597
BstF5I	GGATG	1 cut(s)	61
BstH2I	RGCGCY	1 cut(s)	151
BstHHI	GCGC	1 cut(s)	150
BstKTI	GATC	3 cut(s)	589, 778, 793
BstMBI	GATC	3 cut(s)	586, 775, 790
BstMWI	GCNNNNNNNGC	2 cut(s)	55, 362
BstSCI	CCNGG	1 cut(s)	300
BstSFI	CTRYAG	1 cut(s)	646
BstV1I	GCAGC	4 cut(s)	67, 321, 433, 467
BstX2I	RGATCY	2 cut(s)	586, 775
BstYI	RGATCY	2 cut(s)	586, 775
BsuRI	GGCC	2 cut(s)	18, 541
BtsCI	GGATG	1 cut(s)	61
BtsIMutI	CAGTG	1 cut(s)	662
Cac8I	GCNNGC	2 cut(s)	339, 395
CciI	TCATGA	1 cut(s)	534
CfoI	GCGC	1 cut(s)	150
Cfr10I	RCCGGY	2 cut(s)	337, 382
Csp6I	GTAC	2 cut(s)	400, 799
CviAII	CATG	3 cut(s)	535, 892, 913
CviQI	GTAC	2 cut(s)	400, 799
DdeI	CTNAG	1 cut(s)	597
DpnI	GATC	3 cut(s)	588, 777, 792
DpnII	GATC	3 cut(s)	586, 775, 790
DraI	TTTAAA	1 cut(s)	748
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
Eam1104I	CTCTTC	1 cut(s)	558
EarI	CTCTTC	1 cut(s)	558
Eco147I	AGGCCT	1 cut(s)	18
Eco24I	GRGCYC	1 cut(s)	108
Eco47III	AGCGCT	1 cut(s)	149
Eco57I	CTGAAG	1 cut(s)	686
EcoT38I	GRGCYC	1 cut(s)	108
FaeI	CATG	3 cut(s)	538, 895, 916
FalI	AAGNNNNNCTT	6 cut(s)	137, 169, 585, 617, 659, 691
FaqI	GGGAC	2 cut(s)	284, 684
FatI	CATG	3 cut(s)	534, 891, 912
FauI	CCCGC	1 cut(s)	235
Fnu4HI	GCNGC	7 cut(s)	56, 240, 335, 363, 366, 447, 481
FokI	GGATG	1 cut(s)	48
FriOI	GRGCYC	1 cut(s)	108
Fsp4HI	GCNGC	7 cut(s)	56, 240, 335, 363, 366, 447, 481
FspBI	CTAG	3 cut(s)	27, 497, 710
GlaI	GCGC	1 cut(s)	149
GluI	GCNGC	7 cut(s)	56, 240, 335, 363, 366, 447, 481
HaeII	RGCGCY	1 cut(s)	151
HaeIII	GGCC	2 cut(s)	18, 541
HapII	CCGG	3 cut(s)	302, 338, 383
HhaI	GCGC	1 cut(s)	150
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	3 cut(s)	538, 895, 916
Hin6I	GCGC	1 cut(s)	148
HinP1I	GCGC	1 cut(s)	148
HincII	GTYRAC	1 cut(s)	270
HindII	GTYRAC	1 cut(s)	270
HindIII	AAGCTT	1 cut(s)	599
HinfI	GANTC	4 cut(s)	205, 371, 472, 672
HpaII	CCGG	3 cut(s)	302, 338, 383
HphI	GGTGA	4 cut(s)	68, 305, 355, 397
Hpy166II	GTNNAC	3 cut(s)	270, 418, 502
Hpy188I	TCNGA	7 cut(s)	103, 204, 210, 261, 316, 477, 780
Hpy188III	TCNNGA	6 cut(s)	27, 136, 535, 590, 788, 906
Hpy8I	GTNNAC	3 cut(s)	270, 418, 502
Hpy99I	CGWCG	2 cut(s)	95, 98
HpyAV	CCTTC	4 cut(s)	123, 382, 661, 854
HpyCH4III	ACNGT	3 cut(s)	487, 841, 928
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	4 cut(s)	397, 483, 849, 856
HpyF10VI	GCNNNNNNNGC	2 cut(s)	55, 362
HpyF3I	CTNAG	1 cut(s)	597
HpySE526I	ACGT	1 cut(s)	93
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	3 cut(s)	538, 895, 916
HspAI	GCGC	1 cut(s)	148
KroI	GCCGGC	1 cut(s)	337
KroNI	GCCGGC	1 cut(s)	339
Kzo9I	GATC	3 cut(s)	586, 775, 790
LmnI	GCTCC	4 cut(s)	103, 304, 477, 691
Lsp1109I	GCAGC	4 cut(s)	67, 321, 433, 467
LweI	GCATC	1 cut(s)	615
MaeI	CTAG	3 cut(s)	27, 497, 710
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	2 cut(s)	322, 457
MalI	GATC	3 cut(s)	588, 777, 792
MboI	GATC	3 cut(s)	586, 775, 790
MboII	GAAGA	2 cut(s)	575, 907
MflI	RGATCY	2 cut(s)	586, 775
MhlI	GDGCHC	1 cut(s)	108
MluCI	AATT	2 cut(s)	618, 810
MlyI	GAGTC	1 cut(s)	666
MmeI	TCCRAC	3 cut(s)	182, 239, 294
MroNI	GCCGGC	1 cut(s)	337
MseI	TTAA	6 cut(s)	510, 558, 621, 656, 747, 833
MslI	CAYNNNNRTG	1 cut(s)	533
MspA1I	CMGCKG	1 cut(s)	334
MspCI	CTTAAG	1 cut(s)	557
MspI	CCGG	3 cut(s)	302, 338, 383
MspR9I	CCNGG	1 cut(s)	302
MwoI	GCNNNNNNNGC	2 cut(s)	55, 362
NaeI	GCCGGC	1 cut(s)	339
NciI	CCSGG	1 cut(s)	302
NdeII	GATC	3 cut(s)	586, 775, 790
NgoMIV	GCCGGC	1 cut(s)	337
NlaIII	CATG	3 cut(s)	538, 895, 916
NlaIV	GGNNCC	3 cut(s)	105, 489, 760
NmeAIII	GCCGAG	1 cut(s)	25
PagI	TCATGA	1 cut(s)	534
PceI	AGGCCT	1 cut(s)	18
PcsI	WCGNNNNNNNCGW	1 cut(s)	90
PdiI	GCCGGC	1 cut(s)	339
PfeI	GAWTC	3 cut(s)	205, 371, 472
PflMI	CCANNNNNTGG	1 cut(s)	956
PfoI	TCCNGGA	1 cut(s)	300
PkrI	GCNGC	7 cut(s)	57, 241, 336, 364, 367, 448, 482
PleI	GAGTC	1 cut(s)	666
PpsI	GAGTC	1 cut(s)	666
PsiI	TTATAA	1 cut(s)	174
PspN4I	GGNNCC	3 cut(s)	105, 489, 760
PsuI	RGATCY	2 cut(s)	586, 775
PvuII	CAGCTG	1 cut(s)	334
RsaI	GTAC	2 cut(s)	401, 800
RsaNI	GTAC	2 cut(s)	400, 799
RseI	CAYNNNNRTG	1 cut(s)	533
SaqAI	TTAA	6 cut(s)	510, 558, 621, 656, 747, 833
SatI	GCNGC	7 cut(s)	56, 240, 335, 363, 366, 447, 481
Sau3AI	GATC	3 cut(s)	586, 775, 790
ScaI	AGTACT	1 cut(s)	401
SchI	GAGTC	1 cut(s)	666
ScrFI	CCNGG	1 cut(s)	302
SduI	GDGCHC	1 cut(s)	108
SfaNI	GCATC	1 cut(s)	615
SfcI	CTRYAG	1 cut(s)	646
SmiMI	CAYNNNNRTG	1 cut(s)	533
SmlI	CTYRAG	2 cut(s)	548, 557
SmoI	CTYRAG	2 cut(s)	548, 557
Sse9I	AATT	2 cut(s)	618, 810
SseBI	AGGCCT	1 cut(s)	18
SsiI	CCGC	7 cut(s)	239, 242, 341, 362, 365, 519, 756
SspMI	CTAG	3 cut(s)	27, 497, 710
StuI	AGGCCT	1 cut(s)	18
StyD4I	CCNGG	1 cut(s)	300
TaaI	ACNGT	3 cut(s)	487, 841, 928
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	1 cut(s)	719
TasI	AATT	2 cut(s)	618, 810
TatI	WGTACW	2 cut(s)	399, 798
TauI	GCSGC	3 cut(s)	242, 365, 368
TfiI	GAWTC	3 cut(s)	205, 371, 472
Tru1I	TTAA	6 cut(s)	510, 558, 621, 656, 747, 833
Tru9I	TTAA	6 cut(s)	510, 558, 621, 656, 747, 833
TscAI	CASTG	1 cut(s)	669
TseI	GCWGC	4 cut(s)	55, 334, 446, 480
TspDTI	ATGAA	2 cut(s)	685, 908
TspRI	CASTG	1 cut(s)	669
Van91I	CCANNNNNTGG	1 cut(s)	956
Vha464I	CTTAAG	1 cut(s)	557
XbaI	TCTAGA	1 cut(s)	26
XspI	CTAG	3 cut(s)	27, 497, 710
ZraI	GACGTC	1 cut(s)	94
ZrmI	AGTACT	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.