Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000157.1

Orthogroup ID

OG0009287

Physical Location & Seq

Genomic Coordinates Reverse (-)

26005 .. 29764

Gene Structure 3760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000157.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

atggcttactggcggggcctctcgtccagagcgagcatcattgctcggcgaaagcagcaccatccctgcatctctcacattctccacgacgacgacgtcgtttcggaaccctctccttccccaaataccaatcatttcctcacccaaaagcggttcttcagtttggatagtaaagtttcaggctttggtgggtttgctcagaatcggaggatttcaaatgctctgctttcgtcgccgccggctggattcgggtttgctcggaatatgtcgacggcgggcgggggaggggcggataagattggggtgttcagtgatgtgccggagattctgtcggacacgacggtgcaagctgtgacttcgcagctgccggtggtgaatgaggtggcgattgcggcggctgattcctacttgccggttaagggcttgcagtacttgattgattatgtccatactactgctgggttgagctggtgggctgccattgtggtaacaactcttttgattcgaagctgcacggttccgcttctagtaaaccaacttaaagcaacggcaaaactcactcttatgaggccacgtctagaggaacttaagcaagagatggaagaaaagggtatggatctcggagctaagattgaatatcaaaagaaaattaagatgctattcaaggaatatggctgtagtcccttaactccactaaagggactctttattcaagctcctgtcttcatcagctttttcctagcaatatcgaacatggcagagaaggtgccatcgtttaaagatggtggtgcctattggtttgttgatctgacaactcctgatcctatgtacatttttccagttttggcaggattgacattcttaataactgtggaggctgtattttgttactgggttacctccaacttgttttcgctcggatatggaattgtaattaagaatcctttcgtgaagaagacactgggtcttcctcagctgcctaccccggctccacagccacaaggatcacaacaatctgcattctcactgttttcacaaatgaaacagctggctgcagccccagagcccgcctcatcaaccgttcaaccagcaaagattcaagaccggagaacatcatcgacatcagatctcagtcaaaggattaaaagtttagagaaaaaagtaaagggaaaaaagagaaacaagaagaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

60KD_IMP

Protein Analysis

397

Amino Acids

43.67

Weight (kDa)

9.66

Isoelectric Point (pI)

49.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44890 AT5G62050
fragaria_vesca	FvH4_5g04530 FvH4_5g04530 FvH4_5g04530 FvH4_5g04530 FvH4_5g04530
malus_domestica	MD06G1106300.v1.1
prunus_persica	Prupe.5G118500_v2.0.a1
pyrus_communis	pycom06g10060
rosa_chinensis	RchiOBHm_Chr7g0194921
rosa_laevigata	RLG00000004157
rosa_multiflora	Rmu_co8146178.1_g000001 Rmu_ssc0000157.1_g000005
rosa_roxburghii	Rroxscaffold_3G00260890
rosa_rugosa	Rorug07G0019000 Rorug07G0019100
rosa_samantha	Rh7AG146800 Rh7BG147500 Rh7CG150800 Rh7DG148000
rosa_wichuraiana	Rw7G012530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	95
AatII	GACGTC	1 cut(s)	99
AccB1I	GGYRCC	2 cut(s)	766, 788
AccI	GTMKAC	1 cut(s)	269
AclWI	GGATC	3 cut(s)	624, 815, 1012
AcuI	CTGAAG	1 cut(s)	142
AcyI	GRCGYC	1 cut(s)	96
AfaI	GTAC	2 cut(s)	431, 830
AfiI	CCNNNNNNNGG	4 cut(s)	150, 242, 419, 698
AflII	CTTAAG	1 cut(s)	587
AgsI	TTSAA	6 cut(s)	216, 635, 664, 713, 1085, 1100
AhdI	GACNNNNNGTC	1 cut(s)	963
AjiI	CACGTC	1 cut(s)	575
AleI	CACNNNNGTG	1 cut(s)	341
AluBI	AGCT	9 cut(s)	350, 364, 468, 510, 626, 716, 732, 976, 1048
AluI	AGCT	9 cut(s)	350, 364, 468, 510, 626, 716, 732, 976, 1048
AlwI	GGATC	3 cut(s)	624, 815, 1012
AoxI	GGCC	2 cut(s)	16, 569
ApeKI	GCWGC	8 cut(s)	55, 361, 364, 476, 510, 976, 1052, 1055
Asp700I	GAANNNNTTC	1 cut(s)	944
AspS9I	GGNCC	1 cut(s)	16
AsuC2I	CCSGG	1 cut(s)	986
AsuHPI	GGTGA	2 cut(s)	133, 385
AsuII	TTCGAA	1 cut(s)	505
BanI	GGYRCC	2 cut(s)	766, 788
BanII	GRGCYC	1 cut(s)	1068
BbsI	GAAGAC	3 cut(s)	715, 959, 962
BbvCI	CCTCAGC	1 cut(s)	972
BbvI	GCAGC	8 cut(s)	67, 351, 373, 463, 497, 963, 1039, 1067
BccI	CCATC	4 cut(s)	69, 592, 776, 778
BceAI	ACGGC	2 cut(s)	288, 564
BcnI	CCSGG	1 cut(s)	986
BfaI	CTAG	3 cut(s)	527, 578, 740
BfmI	CTRYAG	2 cut(s)	676, 1053
BfrI	CTTAAG	1 cut(s)	587
BglII	AGATCT	1 cut(s)	1126
BmcAI	AGTACT	1 cut(s)	431
Bme1390I	CCNGG	1 cut(s)	986
BmeRI	GACNNNNNGTC	1 cut(s)	963
BmgBI	CACGTC	1 cut(s)	575
BmgT120I	GGNCC	1 cut(s)	16
BmiI	GGNNCC	6 cut(s)	17, 108, 519, 768, 790, 990
BmrFI	CCNGG	1 cut(s)	986
BmrI	ACTGGG	2 cut(s)	901, 971
BmsI	GCATC	3 cut(s)	45, 78, 645
BmuI	ACTGGG	2 cut(s)	901, 971
BpiI	GAAGAC	3 cut(s)	715, 959, 962
BplI	GAGNNNNNCTC	2 cut(s)	1055, 1087
Bpu10I	CCTNAGC	1 cut(s)	972
Bpu14I	TTCGAA	1 cut(s)	505
BpuMI	CCSGG	1 cut(s)	986
BsaHI	GRCGYC	1 cut(s)	96
BsaJI	CCNNGG	1 cut(s)	984
BsaWI	WCCGGW	1 cut(s)	1104
BsaXI	ACNNNNNCTCC	4 cut(s)	314, 344, 973, 1003
Bsc4I	CCNNNNNNNGG	4 cut(s)	150, 242, 419, 698
Bse118I	RCCGGY	3 cut(s)	238, 367, 412
Bse1I	ACTGG	4 cut(s)	14, 839, 896, 966
Bse3DI	GCAATG	1 cut(s)	39
BseDI	CCNNGG	1 cut(s)	984
BseGI	GGATG	1 cut(s)	61
BseLI	CCNNNNNNNGG	4 cut(s)	150, 242, 419, 698
BseMI	GCAATG	1 cut(s)	39
BseMII	CTCAG	3 cut(s)	212, 986, 1144
BseNI	ACTGG	4 cut(s)	14, 839, 896, 966
BseXI	GCAGC	8 cut(s)	67, 351, 373, 463, 497, 963, 1039, 1067
BseYI	CCCAGC	1 cut(s)	458
BsgI	GTGCAG	1 cut(s)	496
BshFI	GGCC	2 cut(s)	18, 571
BshNI	GGYRCC	2 cut(s)	766, 788
BsiSI	CCGG	6 cut(s)	239, 320, 368, 413, 986, 1105
BslFI	GGGAC	2 cut(s)	666, 714
BslI	CCNNNNNNNGG	4 cut(s)	150, 242, 419, 698
BsmFI	GGGAC	2 cut(s)	666, 714
BsmI	GAATGC	1 cut(s)	1019
BsnI	GGCC	2 cut(s)	18, 571
Bsp119I	TTCGAA	1 cut(s)	505
Bsp1286I	GDGCHC	1 cut(s)	1068
Bsp1407I	TGTACA	1 cut(s)	828
Bsp143I	GATC	5 cut(s)	616, 805, 820, 1004, 1126
BspANI	GGCC	2 cut(s)	18, 571
BspCNI	CTCAG	3 cut(s)	211, 985, 1143
BspLI	GGNNCC	6 cut(s)	17, 108, 519, 768, 790, 990
BspMAI	CTGCAG	1 cut(s)	1057
BspPI	GGATC	3 cut(s)	624, 815, 1012
BspT104I	TTCGAA	1 cut(s)	505
BspT107I	GGYRCC	2 cut(s)	766, 788
BspTI	CTTAAG	1 cut(s)	587
BsrDI	GCAATG	1 cut(s)	39
BsrFI	RCCGGY	3 cut(s)	238, 367, 412
BsrGI	TGTACA	1 cut(s)	828
BsrI	ACTGG	4 cut(s)	14, 839, 896, 966
BssAI	RCCGGY	3 cut(s)	238, 367, 412
BssECI	CCNNGG	1 cut(s)	984
BssMI	GATC	5 cut(s)	616, 805, 820, 1004, 1126
BssNI	GRCGYC	1 cut(s)	96
Bst4CI	ACNGT	5 cut(s)	343, 517, 871, 1029, 1081
Bst6I	CTCTTC	1 cut(s)	1181
BstACI	GRCGYC	1 cut(s)	96
BstAFI	CTTAAG	1 cut(s)	587
BstAUI	TGTACA	1 cut(s)	828
BstBI	TTCGAA	1 cut(s)	505
BstC8I	GCNNGC	7 cut(s)	34, 240, 277, 348, 425, 1050, 1068
BstDEI	CTNAG	4 cut(s)	198, 627, 972, 1130
BstEII	GGTNACC	1 cut(s)	895
BstF5I	GGATG	1 cut(s)	61
BstKTI	GATC	5 cut(s)	619, 808, 823, 1007, 1129
BstMBI	GATC	5 cut(s)	616, 805, 820, 1004, 1126
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 232, 392
BstPI	GGTNACC	1 cut(s)	895
BstSCI	CCNGG	1 cut(s)	984
BstSFI	CTRYAG	2 cut(s)	676, 1053
BstV1I	GCAGC	8 cut(s)	67, 351, 373, 463, 497, 963, 1039, 1067
BstV2I	GAAGAC	3 cut(s)	715, 959, 962
BstX2I	RGATCY	2 cut(s)	616, 1126
BstYI	RGATCY	2 cut(s)	616, 1126
BsuRI	GGCC	2 cut(s)	18, 571
BtrI	CACGTC	1 cut(s)	575
BtsCI	GGATG	1 cut(s)	61
BtsIMutI	CAGTG	3 cut(s)	316, 959, 1025
Cac8I	GCNNGC	7 cut(s)	34, 240, 277, 348, 425, 1050, 1068
Cfr10I	RCCGGY	3 cut(s)	238, 367, 412
Cfr13I	GGNCC	1 cut(s)	16
Csp6I	GTAC	2 cut(s)	430, 829
CviAII	CATG	1 cut(s)	754
CviQI	GTAC	2 cut(s)	430, 829
DdeI	CTNAG	4 cut(s)	198, 627, 972, 1130
DpnI	GATC	5 cut(s)	618, 807, 822, 1006, 1128
DpnII	GATC	5 cut(s)	616, 805, 820, 1004, 1126
DraI	TTTAAA	1 cut(s)	778
DrdI	GACNNNNNNGTC	1 cut(s)	95
DriI	GACNNNNNGTC	1 cut(s)	963
DseDI	GACNNNNNNGTC	1 cut(s)	95
Eam1104I	CTCTTC	1 cut(s)	1181
Eam1105I	GACNNNNNGTC	1 cut(s)	963
EarI	CTCTTC	1 cut(s)	1181
EciI	GGCGGA	1 cut(s)	305
Eco24I	GRGCYC	1 cut(s)	1068
Eco57I	CTGAAG	1 cut(s)	142
Eco91I	GGTNACC	1 cut(s)	895
EcoO109I	RGGNCCY	1 cut(s)	16
EcoO65I	GGTNACC	1 cut(s)	895
EcoT38I	GRGCYC	1 cut(s)	1068
FaeI	CATG	1 cut(s)	757
FaiI	YATR	9 cut(s)	266, 444, 450, 566, 614, 672, 755, 827, 924
FalI	AAGNNNNNCTT	4 cut(s)	140, 172, 689, 721
FaqI	GGGAC	2 cut(s)	666, 714
FatI	CATG	1 cut(s)	753
FauI	CCCGC	4 cut(s)	6, 268, 272, 1075
FblI	GTMKAC	1 cut(s)	269
FokI	GGATG	1 cut(s)	48
FriOI	GRGCYC	1 cut(s)	1068
FspBI	CTAG	3 cut(s)	527, 578, 740
GsaI	CCCAGC	1 cut(s)	462
HaeIII	GGCC	2 cut(s)	18, 571
HapII	CCGG	6 cut(s)	239, 320, 368, 413, 986, 1105
Hin1I	GRCGYC	1 cut(s)	96
Hin1II	CATG	1 cut(s)	757
HincII	GTYRAC	1 cut(s)	270
HindII	GTYRAC	1 cut(s)	270
HinfI	GANTC	8 cut(s)	202, 246, 325, 401, 502, 702, 940, 1096
HpaII	CCGG	6 cut(s)	239, 320, 368, 413, 986, 1105
HphI	GGTGA	2 cut(s)	133, 385
Hpy166II	GTNNAC	2 cut(s)	270, 532
Hpy188I	TCNGA	9 cut(s)	106, 201, 207, 261, 334, 623, 810, 920, 1126
Hpy188III	TCNNGA	5 cut(s)	27, 578, 818, 949, 1100
Hpy8I	GTNNAC	2 cut(s)	270, 532
Hpy99I	CGWCG	7 cut(s)	92, 95, 98, 101, 235, 274, 343
HpyAV	CCTTC	2 cut(s)	126, 757
HpyCH4III	ACNGT	5 cut(s)	343, 517, 871, 1029, 1081
HpyCH4IV	ACGT	2 cut(s)	96, 574
HpyCH4V	TGCA	6 cut(s)	69, 346, 427, 513, 1019, 1055
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 232, 392
HpyF3I	CTNAG	4 cut(s)	198, 627, 972, 1130
HpySE526I	ACGT	2 cut(s)	96, 574
Hsp92I	GRCGYC	1 cut(s)	96
Hsp92II	CATG	1 cut(s)	757
KroI	GCCGGC	1 cut(s)	238
KroNI	GCCGGC	1 cut(s)	240
Kzo9I	GATC	5 cut(s)	616, 805, 820, 1004, 1126
LmnI	GCTCC	3 cut(s)	623, 721, 994
Lsp1109I	GCAGC	8 cut(s)	67, 351, 373, 463, 497, 963, 1039, 1067
LweI	GCATC	3 cut(s)	45, 78, 645
MaeI	CTAG	3 cut(s)	527, 578, 740
MaeII	ACGT	2 cut(s)	96, 574
MaeIII	GTNAC	4 cut(s)	352, 487, 887, 895
MalI	GATC	5 cut(s)	618, 807, 822, 1006, 1128
MboI	GATC	5 cut(s)	616, 805, 820, 1004, 1126
MboII	GAAGA	6 cut(s)	148, 614, 715, 959, 964, 967
MflI	RGATCY	2 cut(s)	616, 1126
MhlI	GDGCHC	1 cut(s)	1068
MluCI	AATT	3 cut(s)	648, 927, 933
MlyI	GAGTC	1 cut(s)	696
MmeI	TCCRAC	2 cut(s)	312, 927
MroNI	GCCGGC	1 cut(s)	238
MroXI	GAANNNNTTC	1 cut(s)	944
MseI	TTAA	9 cut(s)	417, 540, 588, 651, 686, 777, 863, 936, 1143
MslI	CAYNNNNRTG	2 cut(s)	341, 563
MspA1I	CMGCKG	3 cut(s)	364, 976, 1048
MspCI	CTTAAG	1 cut(s)	587
MspI	CCGG	6 cut(s)	239, 320, 368, 413, 986, 1105
MspR9I	CCNGG	1 cut(s)	986
Mva1269I	GAATGC	1 cut(s)	1019
MwoI	GCNNNNNNNGC	3 cut(s)	55, 232, 392
NaeI	GCCGGC	1 cut(s)	240
NciI	CCSGG	1 cut(s)	986
NdeII	GATC	5 cut(s)	616, 805, 820, 1004, 1126
NgoMIV	GCCGGC	1 cut(s)	238
NlaIII	CATG	1 cut(s)	757
NlaIV	GGNNCC	6 cut(s)	17, 108, 519, 768, 790, 990
NmeAIII	GCCGAG	1 cut(s)	25
NmuCI	GTSAC	1 cut(s)	352
NspV	TTCGAA	1 cut(s)	505
OliI	CACNNNNGTG	1 cut(s)	341
PcsI	WCGNNNNNNNCGW	3 cut(s)	29, 93, 96
PctI	GAATGC	1 cut(s)	1019
PdiI	GCCGGC	1 cut(s)	240
PdmI	GAANNNNTTC	1 cut(s)	944
PfeI	GAWTC	7 cut(s)	202, 246, 325, 401, 502, 940, 1096
PflFI	GACNNNGTC	1 cut(s)	95
PleI	GAGTC	1 cut(s)	696
PpsI	GAGTC	1 cut(s)	696
PspEI	GGTNACC	1 cut(s)	895
PspFI	CCCAGC	1 cut(s)	458
PspN4I	GGNNCC	6 cut(s)	17, 108, 519, 768, 790, 990
PspPI	GGNCC	1 cut(s)	16
PstI	CTGCAG	1 cut(s)	1057
PsuI	RGATCY	2 cut(s)	616, 1126
PsyI	GACNNNGTC	1 cut(s)	95
PvuII	CAGCTG	3 cut(s)	364, 976, 1048
RsaI	GTAC	2 cut(s)	431, 830
RsaNI	GTAC	2 cut(s)	430, 829
RseI	CAYNNNNRTG	2 cut(s)	341, 563
SalI	GTCGAC	1 cut(s)	268
SaqAI	TTAA	9 cut(s)	417, 540, 588, 651, 686, 777, 863, 936, 1143
Sau3AI	GATC	5 cut(s)	616, 805, 820, 1004, 1126
Sau96I	GGNCC	1 cut(s)	16
ScaI	AGTACT	1 cut(s)	431
SchI	GAGTC	1 cut(s)	696
ScrFI	CCNGG	1 cut(s)	986
SduI	GDGCHC	1 cut(s)	1068
SfaNI	GCATC	3 cut(s)	45, 78, 645
SfcI	CTRYAG	2 cut(s)	676, 1053
SfuI	TTCGAA	1 cut(s)	505
SmiMI	CAYNNNNRTG	2 cut(s)	341, 563
SmlI	CTYRAG	1 cut(s)	587
SmoI	CTYRAG	1 cut(s)	587
Sse9I	AATT	3 cut(s)	648, 927, 933
SspMI	CTAG	3 cut(s)	527, 578, 740
StyD4I	CCNGG	1 cut(s)	984
TaaI	ACNGT	5 cut(s)	343, 517, 871, 1029, 1081
TaiI	ACGT	2 cut(s)	99, 577
TaqI	TCGA	4 cut(s)	269, 505, 749, 1118
TasI	AATT	3 cut(s)	648, 927, 933
TatI	WGTACW	2 cut(s)	429, 828
TauI	GCSGC	3 cut(s)	238, 395, 398
TfiI	GAWTC	7 cut(s)	202, 246, 325, 401, 502, 940, 1096
Tru1I	TTAA	9 cut(s)	417, 540, 588, 651, 686, 777, 863, 936, 1143
Tru9I	TTAA	9 cut(s)	417, 540, 588, 651, 686, 777, 863, 936, 1143
TscAI	CASTG	3 cut(s)	316, 966, 1032
TseFI	GTSAC	1 cut(s)	352
TseI	GCWGC	8 cut(s)	55, 361, 364, 476, 510, 976, 1052, 1055
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	2 cut(s)	715, 1055
TspRI	CASTG	3 cut(s)	316, 966, 1032
Tth111I	GACNNNGTC	1 cut(s)	95
Vha464I	CTTAAG	1 cut(s)	587
XbaI	TCTAGA	1 cut(s)	577
XcmI	CCANNNNNNNNNTGG	1 cut(s)	455
XmiI	GTMKAC	1 cut(s)	269
XmnI	GAANNNNTTC	1 cut(s)	944
XspI	CTAG	3 cut(s)	527, 578, 740
ZraI	GACGTC	1 cut(s)	97
ZrmI	AGTACT	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.