Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0009287

Physical Location & Seq

Genomic Coordinates Forward (+)

12391076 .. 12392463

Gene Structure 1388 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG150800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGCTTACTGGCGGGGCCTCTCGTCCAGAGCGAGCATCATTGCTCGGCGAAAGCAGCACCATCCCTGCATCTCTCACATTCTCCACGACGACGACGTCGTTTCGGAACCCTCTCCTTCCCCAAATACCAATCATTTCCTCACCCAAAAGAGGTTCTTCAGTTTGGATAGTAAAGTTTCAGGCTTTGGTGGGTTTGCTCAGAATCGGAGGATTTCAAATGCTCTGCTTTCGTCGCCGCCGGCTGGATTCGGGTTTGCTCGGAATATGTCGACGGCGGGCGGGGGAGGGGCGGATAAGATTGGGGTGTTCAGTGATGTGCCGGAGATTCTGTCGGACACGACGGTGCAAGCTGTGACTTCGCAGCTGCCGGTGGTGAATGAGGTGGCGATTGCGGCGGCTGATTCCTACTTGCCGGTTAAGGGCTTGCAGTACTTGATTGATTATGTCCATACTACTGCTGGGTTGAGCTGGTGGGCTGCCATTGTGGTAACAACTCTTTTGATTCGAAGCTGCACGGTTCCGCTTCTAGTAAACCAACTTAAAGCAACGGCAAAACTCACTCTTATGAGGCCACGTCTAGAGGAACTTAAGCAAGAGATGGAAGAAAAGGGTATGGATCTCGGAGCTAAGATTGAATATCAAAAGAAAATTAAGATGCTATTCAAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

60KD_IMP

Protein Analysis

223

Amino Acids

24.5

Weight (kDa)

9.23

Isoelectric Point (pI)

51.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
60KD_IMP	PF02096	157 - 207	5.8e-07	60Kd inner membrane protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44890 AT5G62050
fragaria_vesca	FvH4_5g04530 FvH4_5g04530 FvH4_5g04530 FvH4_5g04530 FvH4_5g04530
malus_domestica	MD06G1106300.v1.1
prunus_persica	Prupe.5G118500_v2.0.a1
pyrus_communis	pycom06g10060
rosa_chinensis	RchiOBHm_Chr7g0194921
rosa_laevigata	RLG00000004157
rosa_multiflora	Rmu_co8146178.1_g000001 Rmu_ssc0000157.1_g000005
rosa_roxburghii	Rroxscaffold_3G00260890
rosa_rugosa	Rorug07G0019000 Rorug07G0019100
rosa_samantha	Rh7AG146800 Rh7BG147500 Rh7CG150800 Rh7DG148000
rosa_wichuraiana	Rw7G012530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	95
AatII	GACGTC	1 cut(s)	99
AccI	GTMKAC	1 cut(s)	269
AciI	CCGC	8 cut(s)	13, 236, 275, 279, 290, 392, 395, 521
AclWI	GGATC	1 cut(s)	624
AcuI	CTGAAG	1 cut(s)	142
AcyI	GRCGYC	1 cut(s)	96
AfaI	GTAC	1 cut(s)	431
AfiI	CCNNNNNNNGG	3 cut(s)	150, 242, 419
AflII	CTTAAG	1 cut(s)	587
AgsI	TTSAA	3 cut(s)	216, 635, 664
AjiI	CACGTC	1 cut(s)	575
AleI	CACNNNNGTG	1 cut(s)	341
AluBI	AGCT	5 cut(s)	350, 364, 468, 510, 626
AluI	AGCT	5 cut(s)	350, 364, 468, 510, 626
AlwI	GGATC	1 cut(s)	624
AoxI	GGCC	2 cut(s)	16, 569
ApeKI	GCWGC	5 cut(s)	55, 361, 364, 476, 510
AspS9I	GGNCC	1 cut(s)	16
AsuHPI	GGTGA	2 cut(s)	133, 385
AsuII	TTCGAA	1 cut(s)	505
BbvI	GCAGC	5 cut(s)	67, 351, 373, 463, 497
BccI	CCATC	2 cut(s)	69, 592
BceAI	ACGGC	2 cut(s)	288, 564
BfaI	CTAG	2 cut(s)	527, 578
BfrI	CTTAAG	1 cut(s)	587
BisI	GCNGC	8 cut(s)	56, 236, 362, 365, 393, 396, 477, 511
BlsI	GCNGC	8 cut(s)	57, 237, 363, 366, 394, 397, 478, 512
BmcAI	AGTACT	1 cut(s)	431
BmgBI	CACGTC	1 cut(s)	575
BmgT120I	GGNCC	1 cut(s)	16
BmiI	GGNNCC	3 cut(s)	17, 108, 519
BmsI	GCATC	3 cut(s)	45, 78, 645
Bpu14I	TTCGAA	1 cut(s)	505
BsaHI	GRCGYC	1 cut(s)	96
BsaXI	ACNNNNNCTCC	2 cut(s)	314, 344
Bsc4I	CCNNNNNNNGG	3 cut(s)	150, 242, 419
Bse118I	RCCGGY	3 cut(s)	238, 367, 412
Bse1I	ACTGG	1 cut(s)	14
Bse3DI	GCAATG	1 cut(s)	39
BseGI	GGATG	1 cut(s)	61
BseLI	CCNNNNNNNGG	3 cut(s)	150, 242, 419
BseMI	GCAATG	1 cut(s)	39
BseMII	CTCAG	1 cut(s)	212
BseNI	ACTGG	1 cut(s)	14
BseXI	GCAGC	5 cut(s)	67, 351, 373, 463, 497
BseYI	CCCAGC	1 cut(s)	458
BsgI	GTGCAG	1 cut(s)	496
BshFI	GGCC	2 cut(s)	18, 571
BsiSI	CCGG	4 cut(s)	239, 320, 368, 413
BslI	CCNNNNNNNGG	3 cut(s)	150, 242, 419
BsnI	GGCC	2 cut(s)	18, 571
Bsp119I	TTCGAA	1 cut(s)	505
Bsp143I	GATC	1 cut(s)	616
BspACI	CCGC	8 cut(s)	13, 236, 275, 279, 290, 392, 395, 521
BspANI	GGCC	2 cut(s)	18, 571
BspCNI	CTCAG	1 cut(s)	211
BspLI	GGNNCC	3 cut(s)	17, 108, 519
BspPI	GGATC	1 cut(s)	624
BspT104I	TTCGAA	1 cut(s)	505
BspTI	CTTAAG	1 cut(s)	587
BsrDI	GCAATG	1 cut(s)	39
BsrFI	RCCGGY	3 cut(s)	238, 367, 412
BsrI	ACTGG	1 cut(s)	14
BssAI	RCCGGY	3 cut(s)	238, 367, 412
BssMI	GATC	1 cut(s)	616
BssNI	GRCGYC	1 cut(s)	96
Bst4CI	ACNGT	2 cut(s)	343, 517
BstACI	GRCGYC	1 cut(s)	96
BstAFI	CTTAAG	1 cut(s)	587
BstBI	TTCGAA	1 cut(s)	505
BstC8I	GCNNGC	5 cut(s)	34, 240, 277, 348, 425
BstDEI	CTNAG	2 cut(s)	198, 627
BstF5I	GGATG	1 cut(s)	61
BstKTI	GATC	1 cut(s)	619
BstMBI	GATC	1 cut(s)	616
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 232, 392
BstV1I	GCAGC	5 cut(s)	67, 351, 373, 463, 497
BstX2I	RGATCY	1 cut(s)	616
BstYI	RGATCY	1 cut(s)	616
BsuRI	GGCC	2 cut(s)	18, 571
BtrI	CACGTC	1 cut(s)	575
BtsCI	GGATG	1 cut(s)	61
BtsIMutI	CAGTG	1 cut(s)	316
Cac8I	GCNNGC	5 cut(s)	34, 240, 277, 348, 425
Cfr10I	RCCGGY	3 cut(s)	238, 367, 412
Cfr13I	GGNCC	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	430
CviQI	GTAC	1 cut(s)	430
DdeI	CTNAG	2 cut(s)	198, 627
DpnI	GATC	1 cut(s)	618
DpnII	GATC	1 cut(s)	616
DrdI	GACNNNNNNGTC	1 cut(s)	95
DseDI	GACNNNNNNGTC	1 cut(s)	95
EciI	GGCGGA	1 cut(s)	305
Eco57I	CTGAAG	1 cut(s)	142
EcoO109I	RGGNCCY	1 cut(s)	16
FaiI	YATR	5 cut(s)	266, 444, 450, 566, 614
FalI	AAGNNNNNCTT	2 cut(s)	140, 172
FauI	CCCGC	3 cut(s)	6, 268, 272
FblI	GTMKAC	1 cut(s)	269
Fnu4HI	GCNGC	8 cut(s)	56, 236, 362, 365, 393, 396, 477, 511
FokI	GGATG	1 cut(s)	48
Fsp4HI	GCNGC	8 cut(s)	56, 236, 362, 365, 393, 396, 477, 511
FspBI	CTAG	2 cut(s)	527, 578
GluI	GCNGC	8 cut(s)	56, 236, 362, 365, 393, 396, 477, 511
GsaI	CCCAGC	1 cut(s)	462
HaeIII	GGCC	2 cut(s)	18, 571
HapII	CCGG	4 cut(s)	239, 320, 368, 413
Hin1I	GRCGYC	1 cut(s)	96
HincII	GTYRAC	1 cut(s)	270
HindII	GTYRAC	1 cut(s)	270
HinfI	GANTC	5 cut(s)	202, 246, 325, 401, 502
HpaII	CCGG	4 cut(s)	239, 320, 368, 413
HphI	GGTGA	2 cut(s)	133, 385
Hpy166II	GTNNAC	2 cut(s)	270, 532
Hpy188I	TCNGA	6 cut(s)	106, 201, 207, 261, 334, 623
Hpy188III	TCNNGA	2 cut(s)	27, 578
Hpy8I	GTNNAC	2 cut(s)	270, 532
Hpy99I	CGWCG	7 cut(s)	92, 95, 98, 101, 235, 274, 343
HpyAV	CCTTC	1 cut(s)	126
HpyCH4III	ACNGT	2 cut(s)	343, 517
HpyCH4IV	ACGT	2 cut(s)	96, 574
HpyCH4V	TGCA	4 cut(s)	69, 346, 427, 513
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 232, 392
HpyF3I	CTNAG	2 cut(s)	198, 627
HpySE526I	ACGT	2 cut(s)	96, 574
Hsp92I	GRCGYC	1 cut(s)	96
KroI	GCCGGC	1 cut(s)	238
KroNI	GCCGGC	1 cut(s)	240
Kzo9I	GATC	1 cut(s)	616
LmnI	GCTCC	1 cut(s)	623
Lsp1109I	GCAGC	5 cut(s)	67, 351, 373, 463, 497
LweI	GCATC	3 cut(s)	45, 78, 645
MaeI	CTAG	2 cut(s)	527, 578
MaeII	ACGT	2 cut(s)	96, 574
MaeIII	GTNAC	2 cut(s)	352, 487
MalI	GATC	1 cut(s)	618
MboI	GATC	1 cut(s)	616
MboII	GAAGA	2 cut(s)	148, 614
MflI	RGATCY	1 cut(s)	616
MluCI	AATT	1 cut(s)	648
MmeI	TCCRAC	1 cut(s)	312
MnlI	CCTC	9 cut(s)	29, 121, 144, 149, 201, 278, 373, 561, 574
MroNI	GCCGGC	1 cut(s)	238
MseI	TTAA	4 cut(s)	417, 540, 588, 651
MslI	CAYNNNNRTG	2 cut(s)	341, 563
MspA1I	CMGCKG	1 cut(s)	364
MspCI	CTTAAG	1 cut(s)	587
MspI	CCGG	4 cut(s)	239, 320, 368, 413
MwoI	GCNNNNNNNGC	3 cut(s)	55, 232, 392
NaeI	GCCGGC	1 cut(s)	240
NdeII	GATC	1 cut(s)	616
NgoMIV	GCCGGC	1 cut(s)	238
NlaIV	GGNNCC	3 cut(s)	17, 108, 519
NmeAIII	GCCGAG	1 cut(s)	25
NmuCI	GTSAC	1 cut(s)	352
NspV	TTCGAA	1 cut(s)	505
OliI	CACNNNNGTG	1 cut(s)	341
PcsI	WCGNNNNNNNCGW	3 cut(s)	29, 93, 96
PdiI	GCCGGC	1 cut(s)	240
PfeI	GAWTC	5 cut(s)	202, 246, 325, 401, 502
PflFI	GACNNNGTC	1 cut(s)	95
PkrI	GCNGC	8 cut(s)	57, 237, 363, 366, 394, 397, 478, 512
PspFI	CCCAGC	1 cut(s)	458
PspN4I	GGNNCC	3 cut(s)	17, 108, 519
PspPI	GGNCC	1 cut(s)	16
PsuI	RGATCY	1 cut(s)	616
PsyI	GACNNNGTC	1 cut(s)	95
PvuII	CAGCTG	1 cut(s)	364
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
RseI	CAYNNNNRTG	2 cut(s)	341, 563
SalI	GTCGAC	1 cut(s)	268
SaqAI	TTAA	4 cut(s)	417, 540, 588, 651
SatI	GCNGC	8 cut(s)	56, 236, 362, 365, 393, 396, 477, 511
Sau3AI	GATC	1 cut(s)	616
Sau96I	GGNCC	1 cut(s)	16
ScaI	AGTACT	1 cut(s)	431
SetI	ASST	9 cut(s)	99, 155, 352, 366, 384, 470, 512, 577, 628
SfaNI	GCATC	3 cut(s)	45, 78, 645
SfuI	TTCGAA	1 cut(s)	505
SmiMI	CAYNNNNRTG	2 cut(s)	341, 563
SmlI	CTYRAG	1 cut(s)	587
SmoI	CTYRAG	1 cut(s)	587
Sse9I	AATT	1 cut(s)	648
SsiI	CCGC	8 cut(s)	13, 236, 275, 279, 290, 392, 395, 521
SspMI	CTAG	2 cut(s)	527, 578
TaaI	ACNGT	2 cut(s)	343, 517
TaiI	ACGT	2 cut(s)	99, 577
TaqI	TCGA	2 cut(s)	269, 505
TasI	AATT	1 cut(s)	648
TatI	WGTACW	1 cut(s)	429
TauI	GCSGC	3 cut(s)	238, 395, 398
TfiI	GAWTC	5 cut(s)	202, 246, 325, 401, 502
Tru1I	TTAA	4 cut(s)	417, 540, 588, 651
Tru9I	TTAA	4 cut(s)	417, 540, 588, 651
TscAI	CASTG	1 cut(s)	316
TseFI	GTSAC	1 cut(s)	352
TseI	GCWGC	5 cut(s)	55, 361, 364, 476, 510
Tsp45I	GTSAC	1 cut(s)	352
TspRI	CASTG	1 cut(s)	316
Tth111I	GACNNNGTC	1 cut(s)	95
Vha464I	CTTAAG	1 cut(s)	587
XbaI	TCTAGA	1 cut(s)	577
XcmI	CCANNNNNNNNNTGG	1 cut(s)	455
XmiI	GTMKAC	1 cut(s)	269
XspI	CTAG	2 cut(s)	527, 578
ZraI	GACGTC	1 cut(s)	97
ZrmI	AGTACT	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.