AT1G47310

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012804
Physical Location & Seq
Forward (+)
17342739 .. 17344828
2090 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G47310.1

Sequence Viewer

Length: 1188 bp
ATGAAGATCTGTCGCTCTCCTTCCTCCGTCGTACTCTCTCTATTCATCCAAGTCCTTACTCTAGCCGTCGCTCTCGATCCTTCGCAGCCAGACGAATCCAACATCACCGCAACACCGATTCTACAGGATGTGCTGAAGGAGATATCGGTGAAGCAGAAGTGGAATCTAGAGGAAGTTAGATTTTCGAAATTGGAAGTTAAGAAGATTCGTATTGGTACGAGTCGGAGATTTGAGATCCGGATCCGATTAGGGAAGAGCAGATTCGTATTCATCTTCCCGGATGAAATAACAGATTGGAGAAGAAGCGGCGGGGGTAGTGATGTTGAGTTGCAGGAACTAGTTCGGGAAGTTAATTCGAGTAAGGTTCTTGATCCGCCGCTTGTATTGAAAGGTCCATTTGAGCTACTTGTCGATGGCAATGATCGTCTCTCGCTTTCGTTACCGATGAACATTTCACATAGCGGTTTAAAACGAGTTCTTGTGAGTGAGGGCATCTCAGTAGAAATAAGGGAAGCTCAAGCAGTCTCTCTATTCCACTCATCCCATCGAAGATACGCTGCTACTGTCGATCCTGTAAATATTAAAGAAGGAAGTTCTTTATGGTCGTTTTGGGGTTCTGTGTGTGTGCCATTGCCTCCCATACAAATCATAGGGTCAGCTTCATTGGTTGCGTTTAGGACTTCAAATGCAACTACGCAAATCAAGACTTCGTACTTATCAGATGAGGCAATCCATTTATATGCAGAAAAATGTTATTATAAAGCTCACACGTACAGGCAGCATCGGTTCCCAAATGATCTTCTTGGCTTAAAGATCCACAAGTTGGAGAAAGTTCTGAACTCTTTAGGGAATGGAACACGACAAACAGTGAGTTCTGTAACAGCTAAACTAAAGGCATCAGGAATGGTACGGTTTCAGTTAGAGATCGAGAGAAGTATTGGGAAGAATGAGAGTGTGATAAGTAAAAAAGTAGCATGGAGAACAAAACCGAAGATCGAACGGGTTTGGTTTGAAGTAACGGCGAAAATCGAAGGAGATAAGTTGAAAGCAGTGAGGCTGAGAAAAGTAGTGCCTTTCATTGAAGTGGATACAGAAGCATGGAGCAGTTTGATGTCTAACATGTCATTCACAAAGTTTCCATCATTACTTGTTCCTCAAGAAGCTTTAACACTCGATGTCAAATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko02024 ko03060 map02024 map03060
Pfam Domains
Protein Families
No domains found.

Protein Analysis

395

Amino Acids

44.56

Weight (kDa)

9.65

Isoelectric Point (pI)

46.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 759
AccB7I CCANNNNNTGG 1 cut(s) 823
AccIII TCCGGA 1 cut(s) 237
AciI CCGC 6 cut(s) 108, 306, 309, 374, 377, 462
AclWI GGATC 7 cut(s) 71, 229, 235, 248, 365, 563, 808
AcuI CTGAAG 1 cut(s) 155
AfaI GTAC 5 cut(s) 33, 217, 713, 773, 909
AfiI CCNNNNNNNGG 1 cut(s) 823
AflIII ACRYGT 2 cut(s) 768, 1119
AgsI TTSAA 5 cut(s) 388, 684, 1013, 1045, 1082
AhlI ACTAGT 1 cut(s) 337
AluBI AGCT 6 cut(s) 403, 515, 659, 764, 884, 1163
AluI AGCT 6 cut(s) 403, 515, 659, 764, 884, 1163
Alw26I GTCTC 2 cut(s) 431, 529
AlwI GGATC 7 cut(s) 71, 229, 235, 248, 365, 563, 808
Aor13HI TCCGGA 1 cut(s) 237
ApeKI GCWGC 3 cut(s) 85, 557, 778
Asp700I GAANNNNTTC 1 cut(s) 339
AspS9I GGNCC 1 cut(s) 392
AsuC2I CCSGG 1 cut(s) 278
AsuHPI GGTGA 2 cut(s) 97, 160
AsuII TTCGAA 1 cut(s) 185
AvaII GGWCC 1 cut(s) 392
BamHI GGATCC 1 cut(s) 240
BbvI GCAGC 3 cut(s) 97, 544, 790
BccI CCATC 3 cut(s) 407, 552, 1147
BceAI ACGGC 2 cut(s) 50, 1035
BciVI GTATCC 1 cut(s) 1081
BcnI CCSGG 1 cut(s) 278
BcoDI GTCTC 2 cut(s) 431, 529
BcuI ACTAGT 1 cut(s) 337
BfaI CTAG 3 cut(s) 62, 167, 338
BfmI CTRYAG 1 cut(s) 122
BfuI GTATCC 1 cut(s) 1081
BglII AGATCT 1 cut(s) 6
BisI GCNGC 5 cut(s) 86, 307, 377, 558, 779
BlsI GCNGC 5 cut(s) 87, 308, 378, 559, 780
Bme1390I CCNGG 1 cut(s) 278
Bme18I GGWCC 1 cut(s) 392
BmgT120I GGNCC 1 cut(s) 392
BmiI GGNNCC 2 cut(s) 242, 788
BmrFI CCNGG 1 cut(s) 278
BmsI GCATC 3 cut(s) 501, 790, 905
BplI GAGNNNNNCTC 2 cut(s) 479, 511
Bpu14I TTCGAA 1 cut(s) 185
BpuEI CTTGAG 2 cut(s) 501, 1140
BpuMI CCSGG 1 cut(s) 278
BsaAI YACGTR 1 cut(s) 771
BsaBI GATNNNNATC 1 cut(s) 239
BsaWI WCCGGW 1 cut(s) 237
Bsc4I CCNNNNNNNGG 1 cut(s) 823
Bse3DI GCAATG 2 cut(s) 424, 629
Bse8I GATNNNNATC 1 cut(s) 239
BseAI TCCGGA 1 cut(s) 237
BseGI GGATG 4 cut(s) 45, 133, 286, 539
BseJI GATNNNNATC 1 cut(s) 239
BseLI CCNNNNNNNGG 1 cut(s) 823
BseMI GCAATG 2 cut(s) 424, 629
BseMII CTCAG 2 cut(s) 510, 1049
BseXI GCAGC 3 cut(s) 97, 544, 790
BsiSI CCGG 2 cut(s) 238, 278
BslI CCNNNNNNNGG 1 cut(s) 823
BsmAI GTCTC 2 cut(s) 431, 529
BsmBI CGTCTC 1 cut(s) 431
Bsp119I TTCGAA 1 cut(s) 185
Bsp13I TCCGGA 1 cut(s) 237
BspACI CCGC 6 cut(s) 108, 306, 309, 374, 377, 462
BspCNI CTCAG 2 cut(s) 509, 1050
BspEI TCCGGA 1 cut(s) 237
BspLI GGNNCC 2 cut(s) 242, 788
BspPI GGATC 7 cut(s) 71, 229, 235, 248, 365, 563, 808
BspQI GCTCTTC 1 cut(s) 248
BspT104I TTCGAA 1 cut(s) 185
BsrDI GCAATG 2 cut(s) 424, 629
Bst4CI ACNGT 3 cut(s) 565, 868, 912
Bst6I CTCTTC 1 cut(s) 248
BstBAI YACGTR 1 cut(s) 771
BstBI TTCGAA 1 cut(s) 185
BstDEI CTNAG 2 cut(s) 496, 1058
BstF5I GGATG 4 cut(s) 45, 133, 286, 539
BstMAI GTCTC 2 cut(s) 431, 529
BstNSI RCATGY 1 cut(s) 1123
BstSCI CCNGG 1 cut(s) 276
BstSFI CTRYAG 1 cut(s) 122
BstV1I GCAGC 3 cut(s) 97, 544, 790
BstX2I RGATCY 4 cut(s) 6, 234, 240, 813
BstYI RGATCY 4 cut(s) 6, 234, 240, 813
BsuI GTATCC 1 cut(s) 1081
BtsCI GGATG 4 cut(s) 45, 133, 286, 539
BtsI GCAGTG 1 cut(s) 1056
BtsIMutI CAGTG 2 cut(s) 873, 1056
Cfr13I GGNCC 1 cut(s) 392
Csp6I GTAC 5 cut(s) 32, 216, 712, 772, 908
CviAII CATG 3 cut(s) 975, 1098, 1120
CviQI GTAC 5 cut(s) 32, 216, 712, 772, 908
DdeI CTNAG 2 cut(s) 496, 1058
DraI TTTAAA 1 cut(s) 468
Eam1104I CTCTTC 1 cut(s) 248
EarI CTCTTC 1 cut(s) 248
EciI GGCGGA 1 cut(s) 363
Eco32I GATATC 1 cut(s) 144
Eco47I GGWCC 1 cut(s) 392
Eco57I CTGAAG 1 cut(s) 155
EcoRV GATATC 1 cut(s) 144
Esp3I CGTCTC 1 cut(s) 431
FaeI CATG 3 cut(s) 978, 1101, 1123
FatI CATG 3 cut(s) 974, 1097, 1119
FauI CCCGC 1 cut(s) 302
Fnu4HI GCNGC 5 cut(s) 86, 307, 377, 558, 779
FokI GGATG 4 cut(s) 32, 140, 293, 526
Fsp4HI GCNGC 5 cut(s) 86, 307, 377, 558, 779
FspBI CTAG 3 cut(s) 62, 167, 338
GluI GCNGC 5 cut(s) 86, 307, 377, 558, 779
HapII CCGG 2 cut(s) 238, 278
Hin1II CATG 3 cut(s) 978, 1101, 1123
HindIII AAGCTT 1 cut(s) 1161
HinfI GANTC 6 cut(s) 95, 118, 163, 205, 220, 261
HpaII CCGG 2 cut(s) 238, 278
HphI GGTGA 2 cut(s) 97, 160
Hpy188I TCNGA 4 cut(s) 225, 245, 721, 837
Hpy188III TCNNGA 9 cut(s) 74, 167, 238, 344, 368, 703, 900, 928, 1157
Hpy99I CGWCG 2 cut(s) 32, 71
HpyAV CCTTC 5 cut(s) 30, 90, 130, 581, 1025
HpyCH4III ACNGT 3 cut(s) 565, 868, 912
HpyCH4IV ACGT 1 cut(s) 770
HpyCH4V TGCA 3 cut(s) 331, 689, 743
HpyF3I CTNAG 2 cut(s) 496, 1058
HpySE526I ACGT 1 cut(s) 770
Hsp92II CATG 3 cut(s) 978, 1101, 1123
Kpn2I TCCGGA 1 cut(s) 237
LguI GCTCTTC 1 cut(s) 248
LmnI GCTCC 1 cut(s) 1101
LpnPI CCDG 8 cut(s) 102, 110, 251, 291, 317, 585, 760, 885
Lsp1109I GCAGC 3 cut(s) 97, 544, 790
LweI GCATC 3 cut(s) 501, 790, 905
MaeI CTAG 3 cut(s) 62, 167, 338
MaeII ACGT 1 cut(s) 770
MaeIII GTNAC 3 cut(s) 438, 877, 1015
MboII GAAGA 9 cut(s) 16, 214, 265, 265, 312, 561, 791, 955, 1003
MflI RGATCY 4 cut(s) 6, 234, 240, 813
MluCI AATT 2 cut(s) 188, 352
MlyI GAGTC 1 cut(s) 229
MmeI TCCRAC 3 cut(s) 123, 203, 804
MnlI CCTC 7 cut(s) 34, 163, 481, 645, 718, 1047, 1164
MroI TCCGGA 1 cut(s) 237
MroXI GAANNNNTTC 1 cut(s) 339
MseI TTAA 6 cut(s) 198, 351, 467, 582, 809, 1166
MslI CAYNNNNRTG 2 cut(s) 738, 1082
MspI CCGG 2 cut(s) 238, 278
MspR9I CCNGG 1 cut(s) 278
NciI CCSGG 1 cut(s) 278
NlaIII CATG 3 cut(s) 978, 1101, 1123
NlaIV GGNNCC 2 cut(s) 242, 788
NspI RCATGY 1 cut(s) 1123
NspV TTCGAA 1 cut(s) 185
PciI ACATGT 1 cut(s) 1119
PciSI GCTCTTC 1 cut(s) 248
PdmI GAANNNNTTC 1 cut(s) 339
PfeI GAWTC 5 cut(s) 95, 118, 163, 205, 261
PflMI CCANNNNNTGG 1 cut(s) 823
PfoI TCCNGGA 1 cut(s) 276
PkrI GCNGC 5 cut(s) 87, 308, 378, 559, 780
PleI GAGTC 1 cut(s) 228
PpsI GAGTC 1 cut(s) 228
Ppu21I YACGTR 1 cut(s) 771
PscI ACATGT 1 cut(s) 1119
PsiI TTATAA 1 cut(s) 759
PspN4I GGNNCC 2 cut(s) 242, 788
PspPI GGNCC 1 cut(s) 392
PsuI RGATCY 4 cut(s) 6, 234, 240, 813
RsaI GTAC 5 cut(s) 33, 217, 713, 773, 909
RsaNI GTAC 5 cut(s) 32, 216, 712, 772, 908
RseI CAYNNNNRTG 2 cut(s) 738, 1082
SapI GCTCTTC 1 cut(s) 248
SaqAI TTAA 6 cut(s) 198, 351, 467, 582, 809, 1166
SatI GCNGC 5 cut(s) 86, 307, 377, 558, 779
Sau96I GGNCC 1 cut(s) 392
SchI GAGTC 1 cut(s) 229
ScrFI CCNGG 1 cut(s) 278
SetI ASST 9 cut(s) 366, 394, 405, 517, 661, 766, 773, 886, 1165
SfaNI GCATC 3 cut(s) 501, 790, 905
SfcI CTRYAG 1 cut(s) 122
SfuI TTCGAA 1 cut(s) 185
SinI GGWCC 1 cut(s) 392
SmiMI CAYNNNNRTG 2 cut(s) 738, 1082
SmlI CTYRAG 2 cut(s) 516, 1155
SmoI CTYRAG 2 cut(s) 516, 1155
SpeI ACTAGT 1 cut(s) 337
Sse9I AATT 2 cut(s) 188, 352
SsiI CCGC 6 cut(s) 108, 306, 309, 374, 377, 462
SspI AATATT 1 cut(s) 580
SspMI CTAG 3 cut(s) 62, 167, 338
StyD4I CCNGG 1 cut(s) 276
TaaI ACNGT 3 cut(s) 565, 868, 912
TaiI ACGT 1 cut(s) 773
TasI AATT 2 cut(s) 188, 352
TauI GCSGC 2 cut(s) 309, 379
TfiI GAWTC 5 cut(s) 95, 118, 163, 205, 261
Tru1I TTAA 6 cut(s) 198, 351, 467, 582, 809, 1166
Tru9I TTAA 6 cut(s) 198, 351, 467, 582, 809, 1166
TscAI CASTG 2 cut(s) 873, 1056
TseI GCWGC 3 cut(s) 85, 557, 778
TspDTI ATGAA 7 cut(s) 17, 34, 259, 297, 461, 651, 1066
TspGWI ACGGA 1 cut(s) 16
TspRI CASTG 2 cut(s) 873, 1056
Van91I CCANNNNNTGG 1 cut(s) 823
VpaK11BI GGWCC 1 cut(s) 392
XbaI TCTAGA 1 cut(s) 166
XceI RCATGY 1 cut(s) 1123
XmnI GAANNNNTTC 1 cut(s) 339
XspI CTAG 3 cut(s) 62, 167, 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.