Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0012804

Physical Location & Seq

Genomic Coordinates Reverse (-)

59312851 .. 59314789

Gene Structure 1939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG405800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGCTGCAGTTGACACCTTCAAAGTGGAGGGGCCGTTTGAGTTACGAGTCGGTTCAGACCATGACCTCTCCCTTTCATTGCCGATGAACACTACGTATAGTAGAGGGTTGAAAAGGGTGCTTGTTGGTGAAGGCATTACTGTTGAGGTAACGAGAGCAACAGAAGTTTCTGTGTTTCATGCATCTGATCTTGGTGTAGCGATGAACGGAAGTGATACTAACAAGGAGAAAAGTGAGTTTTGGCCATTTTGGCATTCATATTGCGCGCCATTAGTTCCCATTCGCGTTGTAGGGCCTGCATCGTTGGTTGCATACAGGACTAGAAATCCTGCTGCTCACATTGAAACTAAATTTATGTCCAAGGATATAATTGAGTTGTTGCCAGAGAAATGCTTCAGCAGTCATCCTACATACAAGAAGCAGAAGCAGTCTTGCCCCATTGATTCTTTAAGTTTGAAAATATCTATGCTGGAAAGAATTTGGAAAGGCTTTCTTGGTGATAGGATTCGACAAAAAGGATTGTCCGGATTTCTTGAAGCAAAAATCAAAGCCTCAACTATTGTTCGGTTCAAGCTTCAGCTGGAAAGGGATTTTAGGAGGAAGGGGATACTCCAGCAGGACATTGCGGGATGGAGGACCAGGCCAGCAGTGGAAAGGGTTTGGTTTGAAGTTTTGGCGAGAGTTGAATTAGAGAGGTGGAGGCTGAGGCCTATCTTGGTTAAAAAGATAAGGCCATTCATTATAGCAGATTCAGTTGAATGGGATAATCCTTTGAATATTTCCTTTACCAAATCCCAATCTATCCTTGTCGCTCCTGAAGCGCTAACGTTGGATGTGAAATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S26

Protein Analysis

281

Amino Acids

32.08

Weight (kDa)

9.63

Isoelectric Point (pI)

43.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47310
fragaria_vesca	FvH4_2g40681 FvH4_2g40681 FvH4_2g40681
malus_domestica	MD08G1040400.v1.1 MD15G1034900.v1.1
prunus_persica	Prupe.1G389000_v2.0.a1 Prupe.1G389000_v2.0.a1
pyrus_communis	pycom08g03260 pycom15g03210
rosa_chinensis	RchiOBHm_Chr6g0299921
rosa_multiflora	Rmu_co8499763.1_g000002
rosa_roxburghii	Rroxscaffold_7G00168270
rosa_rugosa	Rorug06G0293200
rosa_samantha	Rh6AG404600 Rh6BG412900 Rh6CG419000 Rh6DG405800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	266, 285
AccIII	TCCGGA	1 cut(s)	524
AciI	CCGC	1 cut(s)	626
AclI	AACGTT	1 cut(s)	827
AcoI	YGGCCR	1 cut(s)	242
AcsI	RAATTY	2 cut(s)	350, 477
AcuI	CTGAAG	3 cut(s)	379, 560, 837
AfeI	AGCGCT	1 cut(s)	822
AjnI	CCWGG	1 cut(s)	638
AluBI	AGCT	2 cut(s)	574, 580
AluI	AGCT	2 cut(s)	574, 580
Aor13HI	TCCGGA	1 cut(s)	524
Aor51HI	AGCGCT	1 cut(s)	822
AoxI	GGCC	6 cut(s)	32, 242, 293, 641, 707, 731
ApeKI	GCWGC	2 cut(s)	5, 332
ApoI	RAATTY	2 cut(s)	350, 477
Asp700I	GAANNNNTTC	1 cut(s)	392
AspLEI	GCGC	3 cut(s)	266, 268, 823
AspS9I	GGNCC	3 cut(s)	32, 293, 636
AsuHPI	GGTGA	2 cut(s)	140, 509
AvaII	GGWCC	1 cut(s)	636
BalI	TGGCCA	1 cut(s)	244
BbvCI	CCTCAGC	1 cut(s)	704
BbvI	GCAGC	1 cut(s)	319
BccI	CCATC	1 cut(s)	624
BceAI	ACGGC	1 cut(s)	19
BciT130I	CCWGG	1 cut(s)	640
BciVI	GTATCC	1 cut(s)	600
BfaI	CTAG	1 cut(s)	321
BfmI	CTRYAG	1 cut(s)	6
BfoI	RGCGCY	1 cut(s)	824
BfuI	GTATCC	1 cut(s)	600
BglI	GCCNNNNNGGC	1 cut(s)	250
BisI	GCNGC	2 cut(s)	6, 333
BlsI	GCNGC	2 cut(s)	7, 334
Bme1390I	CCNGG	1 cut(s)	640
Bme18I	GGWCC	1 cut(s)	636
BmgT120I	GGNCC	3 cut(s)	32, 293, 636
BmiI	GGNNCC	1 cut(s)	33
BmrFI	CCNGG	1 cut(s)	640
BmsI	GCATC	2 cut(s)	191, 308
BpmI	CTGGAG	1 cut(s)	596
Bpu10I	CCTNAGC	1 cut(s)	704
BsaAI	YACGTR	1 cut(s)	96
BsaJI	CCNNGG	1 cut(s)	360
BsaWI	WCCGGW	1 cut(s)	524
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bse3DI	GCAATG	2 cut(s)	77, 621
BseAI	TCCGGA	1 cut(s)	524
BseBI	CCWGG	1 cut(s)	640
BseDI	CCNNGG	1 cut(s)	360
BseGI	GGATG	3 cut(s)	403, 635, 838
BseMI	GCAATG	2 cut(s)	77, 621
BseMII	CTCAG	1 cut(s)	695
BsePI	GCGCGC	1 cut(s)	264
BseXI	GCAGC	1 cut(s)	319
Bsh1236I	CGCG	2 cut(s)	266, 285
BshFI	GGCC	6 cut(s)	34, 244, 295, 643, 709, 733
BsiSI	CCGG	1 cut(s)	525
BsmI	GAATGC	1 cut(s)	253
BsnI	GGCC	6 cut(s)	34, 244, 295, 643, 709, 733
Bsp13I	TCCGGA	1 cut(s)	524
Bsp143I	GATC	1 cut(s)	187
BspACI	CCGC	1 cut(s)	626
BspANI	GGCC	6 cut(s)	34, 244, 295, 643, 709, 733
BspCNI	CTCAG	1 cut(s)	696
BspEI	TCCGGA	1 cut(s)	524
BspFNI	CGCG	2 cut(s)	266, 285
BspLI	GGNNCC	1 cut(s)	33
BspMAI	CTGCAG	1 cut(s)	10
BsrDI	GCAATG	2 cut(s)	77, 621
BssECI	CCNNGG	1 cut(s)	360
BssHII	GCGCGC	1 cut(s)	264
BssMI	GATC	1 cut(s)	187
BssT1I	CCWWGG	1 cut(s)	360
Bst2UI	CCWGG	1 cut(s)	640
Bst4CI	ACNGT	1 cut(s)	142
BstBAI	YACGTR	1 cut(s)	96
BstC8I	GCNNGC	3 cut(s)	266, 297, 645
BstDEI	CTNAG	1 cut(s)	704
BstF5I	GGATG	3 cut(s)	403, 635, 838
BstFNI	CGCG	2 cut(s)	266, 285
BstH2I	RGCGCY	1 cut(s)	824
BstHHI	GCGC	3 cut(s)	266, 268, 823
BstKTI	GATC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	187
BstMWI	GCNNNNNNNGC	2 cut(s)	250, 818
BstNI	CCWGG	1 cut(s)	640
BstSCI	CCNGG	1 cut(s)	638
BstSFI	CTRYAG	1 cut(s)	6
BstSNI	TACGTA	1 cut(s)	96
BstUI	CGCG	2 cut(s)	266, 285
BstV1I	GCAGC	1 cut(s)	319
BsuI	GTATCC	1 cut(s)	600
BsuRI	GGCC	6 cut(s)	34, 244, 295, 643, 709, 733
BtgZI	GCGATG	1 cut(s)	215
BtsCI	GGATG	3 cut(s)	403, 635, 838
BtsI	GCAGTG	1 cut(s)	654
BtsIMutI	CAGTG	1 cut(s)	654
Cac8I	GCNNGC	3 cut(s)	266, 297, 645
CfoI	GCGC	3 cut(s)	266, 268, 823
Cfr13I	GGNCC	3 cut(s)	32, 293, 636
CviAII	CATG	2 cut(s)	62, 179
DdeI	CTNAG	1 cut(s)	704
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
EaeI	YGGCCR	1 cut(s)	242
Eco105I	TACGTA	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	360
Eco147I	AGGCCT	1 cut(s)	709
Eco47I	GGWCC	1 cut(s)	636
Eco47III	AGCGCT	1 cut(s)	822
Eco57I	CTGAAG	3 cut(s)	379, 560, 837
EcoO109I	RGGNCCY	1 cut(s)	293
EcoRII	CCWGG	1 cut(s)	638
EcoT14I	CCWWGG	1 cut(s)	360
EcoT22I	ATGCAT	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	360
FaeI	CATG	2 cut(s)	65, 182
FalI	AAGNNNNNCTT	2 cut(s)	477, 509
FatI	CATG	2 cut(s)	61, 178
FauI	CCCGC	1 cut(s)	619
Fnu4HI	GCNGC	2 cut(s)	6, 333
FokI	GGATG	2 cut(s)	390, 642
Fsp4HI	GCNGC	2 cut(s)	6, 333
FspBI	CTAG	1 cut(s)	321
GlaI	GCGC	3 cut(s)	265, 267, 822
GluI	GCNGC	2 cut(s)	6, 333
GsuI	CTGGAG	1 cut(s)	596
HaeII	RGCGCY	1 cut(s)	824
HaeIII	GGCC	6 cut(s)	34, 244, 295, 643, 709, 733
HapII	CCGG	1 cut(s)	525
HhaI	GCGC	3 cut(s)	266, 268, 823
Hin1II	CATG	2 cut(s)	65, 182
Hin6I	GCGC	3 cut(s)	264, 266, 821
HinP1I	GCGC	3 cut(s)	264, 266, 821
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HindIII	AAGCTT	1 cut(s)	572
HinfI	GANTC	4 cut(s)	48, 443, 505, 749
HpaII	CCGG	1 cut(s)	525
HphI	GGTGA	2 cut(s)	140, 509
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	2 cut(s)	58, 187
Hpy188III	TCNNGA	3 cut(s)	525, 533, 815
Hpy8I	GTNNAC	1 cut(s)	13
HpyAV	CCTTC	3 cut(s)	28, 125, 595
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4IV	ACGT	2 cut(s)	95, 827
HpyCH4V	TGCA	4 cut(s)	8, 182, 299, 311
HpyF10VI	GCNNNNNNNGC	2 cut(s)	250, 818
HpyF3I	CTNAG	1 cut(s)	704
HpySE526I	ACGT	2 cut(s)	95, 827
Hsp92II	CATG	2 cut(s)	65, 182
HspAI	GCGC	3 cut(s)	264, 266, 821
Kpn2I	TCCGGA	1 cut(s)	524
Kzo9I	GATC	1 cut(s)	187
LmnI	GCTCC	1 cut(s)	817
Lsp1109I	GCAGC	1 cut(s)	319
LweI	GCATC	2 cut(s)	191, 308
MaeI	CTAG	1 cut(s)	321
MaeII	ACGT	2 cut(s)	95, 827
MaeIII	GTNAC	2 cut(s)	42, 148
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MlsI	TGGCCA	1 cut(s)	244
MluCI	AATT	4 cut(s)	350, 369, 477, 686
MluNI	TGGCCA	1 cut(s)	244
MlyI	GAGTC	1 cut(s)	57
MmeI	TCCRAC	1 cut(s)	810
Mox20I	TGGCCA	1 cut(s)	244
Mph1103I	ATGCAT	1 cut(s)	184
MroI	TCCGGA	1 cut(s)	524
MroXI	GAANNNNTTC	1 cut(s)	392
MscI	TGGCCA	1 cut(s)	244
MseI	TTAA	2 cut(s)	449, 720
Msp20I	TGGCCA	1 cut(s)	244
MspA1I	CMGCKG	1 cut(s)	580
MspI	CCGG	1 cut(s)	525
MspR9I	CCNGG	1 cut(s)	640
Mva1269I	GAATGC	1 cut(s)	253
MvaI	CCWGG	1 cut(s)	640
MvnI	CGCG	2 cut(s)	266, 285
MwoI	GCNNNNNNNGC	2 cut(s)	250, 818
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	2 cut(s)	65, 182
NlaIV	GGNNCC	1 cut(s)	33
NsiI	ATGCAT	1 cut(s)	184
PauI	GCGCGC	1 cut(s)	264
PceI	AGGCCT	1 cut(s)	709
PctI	GAATGC	1 cut(s)	253
PdmI	GAANNNNTTC	1 cut(s)	392
PfeI	GAWTC	3 cut(s)	443, 505, 749
PkrI	GCNGC	2 cut(s)	7, 334
PleI	GAGTC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	56
Ppu21I	YACGTR	1 cut(s)	96
Psp1406I	AACGTT	1 cut(s)	827
Psp6I	CCWGG	1 cut(s)	638
PspGI	CCWGG	1 cut(s)	638
PspN4I	GGNNCC	1 cut(s)	33
PspPI	GGNCC	3 cut(s)	32, 293, 636
PstI	CTGCAG	1 cut(s)	10
PteI	GCGCGC	1 cut(s)	264
PvuII	CAGCTG	1 cut(s)	580
SaqAI	TTAA	2 cut(s)	449, 720
SatI	GCNGC	2 cut(s)	6, 333
Sau3AI	GATC	1 cut(s)	187
Sau96I	GGNCC	3 cut(s)	32, 293, 636
SchI	GAGTC	1 cut(s)	57
ScrFI	CCNGG	1 cut(s)	640
SetI	ASST	8 cut(s)	20, 69, 98, 150, 576, 582, 698, 830
SfaNI	GCATC	2 cut(s)	191, 308
SfcI	CTRYAG	1 cut(s)	6
SinI	GGWCC	1 cut(s)	636
SnaBI	TACGTA	1 cut(s)	96
Sse9I	AATT	4 cut(s)	350, 369, 477, 686
SseBI	AGGCCT	1 cut(s)	709
SsiI	CCGC	1 cut(s)	626
SspI	AATATT	1 cut(s)	778
SspMI	CTAG	1 cut(s)	321
StuI	AGGCCT	1 cut(s)	709
StyD4I	CCNGG	1 cut(s)	638
StyI	CCWWGG	1 cut(s)	360
TaaI	ACNGT	1 cut(s)	142
TaiI	ACGT	2 cut(s)	98, 830
TaqI	TCGA	1 cut(s)	508
TasI	AATT	4 cut(s)	350, 369, 477, 686
TfiI	GAWTC	3 cut(s)	443, 505, 749
Tru1I	TTAA	2 cut(s)	449, 720
Tru9I	TTAA	2 cut(s)	449, 720
TscAI	CASTG	1 cut(s)	654
TseI	GCWGC	2 cut(s)	5, 332
TspDTI	ATGAA	6 cut(s)	66, 101, 167, 218, 246, 727
TspGWI	ACGGA	1 cut(s)	222
TspRI	CASTG	1 cut(s)	654
VpaK11BI	GGWCC	1 cut(s)	636
XapI	RAATTY	2 cut(s)	350, 477
XcmI	CCANNNNNNNNNTGG	1 cut(s)	646
XmnI	GAANNNNTTC	1 cut(s)	392
XspI	CTAG	1 cut(s)	321
Zsp2I	ATGCAT	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.