Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0012804

Physical Location & Seq

Genomic Coordinates Forward (+)

28950278 .. 28953340

Gene Structure 3063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g40681.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGAGCAGACCCATCTCCGTCCTCCTCTTCCTTTCCCTCCTCCAATTCCCACTTCATTTAATCTTCGCTTTCAATTCTTCCCTCTTAAACGACTCCCACATCTTGCAGGACGTATTGAAGCAAATCTCGGCCAAGCACAGGTGGGATTTGCAGAACGTTAGGGTTTCCAGATTGGATTCCAGCAAAGTACGCTTCGGCAGTGCCCAGCGCTACGAGTTCCGGATCGGTTTCGGCAAGTCCCACGTCGTCGTTTTGTTCTCCGACGACGTCGTTTCTTGGAGAAAGTTCCGCAAGCCCAGAACCCATTTCGCCTCTGTGATCAAGGAGCTCAGTTCCGTGGCTGCAGTTGACACCTTCACAGTGGAGGGCCCATTTGAGTTGCGAGTCGATTCTGACCATGACCTCTCCCTTTCATTGCCGATGAACACTACCTATAGTAGAGGGTTGAAAAGAGTGCTTGTTGGTGAAGGCATTACTGTAGAGGTAACAAGAGCAACTGGAGTTTCTGTGTTTCATGCATCTGATCTTGGTTCACCGCTAAACGCAAGTGACACTACTACTGATAAAGGGAAAAGTGAATTTTGGCCCTTTTGGCATTCATACTGCGCGTCGTTAGTTCCCATTCGCGTTATTGGGCCTGCTTCTTTGGTCGCATACAGGACTAGAAATCCTGCTGCTCATATCGAGACTAAGTTTATGTCCAAGGAGATTATTGAGTTGTTGCCAGAGAAATGCTTCAGCAGTCATCGTACATACAGGAAGCAGAAGCAGAGGCAGTCTAGCCCCATTGATTCTTTATGTTCGAAAATAACTATGCTGGAAAGAATTTGGAAAGGAAAAATCAAAGCCTCAACCATTGGTATTGAAGGAAAAATCAAAGCCTCAACTATTGTTCAGTTCAAGCTTCAGCTGGAAAGGGATTTTAGGAGGAGGGGGATACTCCGGCAGAACATTGCGGGATGGAGGACCAGGCCAGATGTGGAAAGGGTTTGGTTTGAAGTTTTGGCGAGAGTTGAATTACAGAGGTTGAGACTGAGGCCTATCTTGGTTAAGAAGATAAAGCCCTTCATTATTGCAGATTCAGCTGAATGGGATAATCCGTCAAATATGTCCTTTACAAAATCCCAATCCATCCTTGTCGCTCCAGAAGCGCTAACGTTGGATGTGAAATGGTGTAGTAAAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 map02024 map03060

Pfam Domains

Protein Families

Peptidase_S24 Peptidase_S26

Protein Analysis

396

Amino Acids

45.08

Weight (kDa)

10.08

Isoelectric Point (pI)

45.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47310
fragaria_vesca	FvH4_2g40681 FvH4_2g40681 FvH4_2g40681
malus_domestica	MD08G1040400.v1.1 MD15G1034900.v1.1
prunus_persica	Prupe.1G389000_v2.0.a1 Prupe.1G389000_v2.0.a1
pyrus_communis	pycom08g03260 pycom15g03210
rosa_chinensis	RchiOBHm_Chr6g0299921
rosa_multiflora	Rmu_co8499763.1_g000002
rosa_roxburghii	Rroxscaffold_7G00168270
rosa_rugosa	Rorug06G0293200
rosa_samantha	Rh6AG404600 Rh6BG412900 Rh6CG419000 Rh6DG405800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	270
AccII	CGCG	2 cut(s)	608, 627
AccIII	TCCGGA	1 cut(s)	219
AciI	CCGC	3 cut(s)	289, 536, 956
AclI	AACGTT	2 cut(s)	156, 1157
AclWI	GGATC	1 cut(s)	230
AcoI	YGGCCR	1 cut(s)	129
AcsI	RAATTY	2 cut(s)	578, 825
AcuI	CTGAAG	2 cut(s)	721, 890
AcyI	GRCGYC	1 cut(s)	267
AfaI	GTAC	2 cut(s)	189, 751
AfeI	AGCGCT	2 cut(s)	209, 1152
AfiI	CCNNNNNNNGG	1 cut(s)	138
AgsI	TTSAA	7 cut(s)	73, 118, 448, 866, 901, 998, 1016
AjiI	CACGTC	1 cut(s)	244
AjnI	CCWGG	1 cut(s)	968
AjuI	GAANNNNNNNTTGG	2 cut(s)	36, 68
AluBI	AGCT	4 cut(s)	328, 904, 910, 1085
AluI	AGCT	4 cut(s)	328, 904, 910, 1085
Alw21I	GWGCWC	1 cut(s)	330
Alw26I	GTCTC	2 cut(s)	680, 1024
AlwI	GGATC	1 cut(s)	230
Aor13HI	TCCGGA	1 cut(s)	219
Aor51HI	AGCGCT	2 cut(s)	209, 1152
AoxI	GGCC	6 cut(s)	129, 367, 584, 635, 971, 1037
ApaI	GGGCCC	1 cut(s)	371
ApeKI	GCWGC	2 cut(s)	341, 674
ApoI	RAATTY	2 cut(s)	578, 825
Asp700I	GAANNNNTTC	1 cut(s)	734
AspLEI	GCGC	3 cut(s)	210, 608, 1153
AspS9I	GGNCC	5 cut(s)	367, 368, 585, 635, 966
AsuHPI	GGTGA	2 cut(s)	476, 525
AsuII	TTCGAA	1 cut(s)	803
AvaII	GGWCC	1 cut(s)	966
BaeGI	GKGCMC	2 cut(s)	205, 371
BanII	GRGCYC	2 cut(s)	330, 371
Bbv12I	GWGCWC	1 cut(s)	330
BbvI	GCAGC	2 cut(s)	328, 661
BccI	CCATC	3 cut(s)	20, 954, 1139
BciT130I	CCWGG	1 cut(s)	970
BciVI	GTATCC	1 cut(s)	930
BclI	TGATCA	1 cut(s)	318
BcoDI	GTCTC	2 cut(s)	680, 1024
BfaI	CTAG	2 cut(s)	663, 780
BfmI	CTRYAG	3 cut(s)	342, 433, 477
BfoI	RGCGCY	2 cut(s)	211, 1154
BfuI	GTATCC	1 cut(s)	930
BglI	GCCNNNNNGGC	1 cut(s)	592
BisI	GCNGC	2 cut(s)	342, 675
BlsI	GCNGC	2 cut(s)	343, 676
Bme1390I	CCNGG	1 cut(s)	970
Bme18I	GGWCC	1 cut(s)	966
BmgBI	CACGTC	1 cut(s)	244
BmgT120I	GGNCC	5 cut(s)	367, 368, 585, 635, 966
BmiI	GGNNCC	1 cut(s)	369
BmrFI	CCNGG	1 cut(s)	970
BmsI	GCATC	1 cut(s)	527
BpmI	CTGGAG	2 cut(s)	519, 1128
Bpu14I	TTCGAA	1 cut(s)	803
BsaHI	GRCGYC	1 cut(s)	267
BsaJI	CCNNGG	2 cut(s)	336, 702
BsaWI	WCCGGW	1 cut(s)	219
BsaXI	ACNNNNNCTCC	2 cut(s)	492, 522
Bsc4I	CCNNNNNNNGG	1 cut(s)	138
Bse1I	ACTGG	1 cut(s)	502
Bse3DI	GCAATG	2 cut(s)	413, 951
BseAI	TCCGGA	1 cut(s)	219
BseBI	CCWGG	1 cut(s)	970
BseDI	CCNNGG	2 cut(s)	336, 702
BseGI	GGATG	3 cut(s)	965, 1131, 1168
BseLI	CCNNNNNNNGG	1 cut(s)	138
BseMI	GCAATG	2 cut(s)	413, 951
BseMII	CTCAG	2 cut(s)	343, 1025
BseNI	ACTGG	1 cut(s)	502
BseRI	GAGGAG	3 cut(s)	14, 29, 943
BseSI	GKGCMC	2 cut(s)	205, 371
BseXI	GCAGC	2 cut(s)	328, 661
BseYI	CCCAGC	1 cut(s)	204
Bsh1236I	CGCG	2 cut(s)	608, 627
BshFI	GGCC	6 cut(s)	131, 369, 586, 637, 973, 1039
BsiHKAI	GWGCWC	1 cut(s)	330
BsiSI	CCGG	2 cut(s)	220, 943
BslFI	GGGAC	1 cut(s)	223
BslI	CCNNNNNNNGG	1 cut(s)	138
BsmAI	GTCTC	2 cut(s)	680, 1024
BsmFI	GGGAC	1 cut(s)	223
BsmI	GAATGC	1 cut(s)	595
BsnI	GGCC	6 cut(s)	131, 369, 586, 637, 973, 1039
Bsp119I	TTCGAA	1 cut(s)	803
Bsp120I	GGGCCC	1 cut(s)	367
Bsp1286I	GDGCHC	3 cut(s)	205, 330, 371
Bsp13I	TCCGGA	1 cut(s)	219
Bsp143I	GATC	3 cut(s)	222, 318, 523
BspACI	CCGC	3 cut(s)	289, 536, 956
BspANI	GGCC	6 cut(s)	131, 369, 586, 637, 973, 1039
BspCNI	CTCAG	2 cut(s)	342, 1026
BspEI	TCCGGA	1 cut(s)	219
BspFNI	CGCG	2 cut(s)	608, 627
BspLI	GGNNCC	1 cut(s)	369
BspMAI	CTGCAG	1 cut(s)	346
BspPI	GGATC	1 cut(s)	230
BspT104I	TTCGAA	1 cut(s)	803
BsrDI	GCAATG	2 cut(s)	413, 951
BsrI	ACTGG	1 cut(s)	502
BssECI	CCNNGG	2 cut(s)	336, 702
BssMI	GATC	3 cut(s)	222, 318, 523
BssNI	GRCGYC	1 cut(s)	267
BssT1I	CCWWGG	1 cut(s)	702
Bst2UI	CCWGG	1 cut(s)	970
Bst4CI	ACNGT	2 cut(s)	361, 478
Bst6I	CTCTTC	1 cut(s)	32
BstACI	GRCGYC	1 cut(s)	267
BstBI	TTCGAA	1 cut(s)	803
BstC8I	GCNNGC	2 cut(s)	293, 639
BstDEI	CTNAG	3 cut(s)	329, 690, 1034
BstDSI	CCRYGG	1 cut(s)	336
BstF5I	GGATG	3 cut(s)	965, 1131, 1168
BstFNI	CGCG	2 cut(s)	608, 627
BstH2I	RGCGCY	2 cut(s)	211, 1154
BstHHI	GCGC	3 cut(s)	210, 608, 1153
BstKTI	GATC	3 cut(s)	225, 321, 526
BstMAI	GTCTC	2 cut(s)	680, 1024
BstMBI	GATC	3 cut(s)	222, 318, 523
BstMWI	GCNNNNNNNGC	4 cut(s)	189, 592, 1082, 1148
BstNI	CCWGG	1 cut(s)	970
BstSCI	CCNGG	1 cut(s)	968
BstSFI	CTRYAG	3 cut(s)	342, 433, 477
BstSLI	GKGCMC	2 cut(s)	205, 371
BstUI	CGCG	2 cut(s)	608, 627
BstV1I	GCAGC	2 cut(s)	328, 661
BsuI	GTATCC	1 cut(s)	930
BsuRI	GGCC	6 cut(s)	131, 369, 586, 637, 973, 1039
BtgI	CCRYGG	1 cut(s)	336
BtrI	CACGTC	1 cut(s)	244
BtsCI	GGATG	3 cut(s)	965, 1131, 1168
BtsI	GCAGTG	1 cut(s)	205
BtsIMutI	CAGTG	2 cut(s)	205, 366
Cac8I	GCNNGC	2 cut(s)	293, 639
CfoI	GCGC	3 cut(s)	210, 608, 1153
Cfr13I	GGNCC	5 cut(s)	367, 368, 585, 635, 966
CseI	GACGC	1 cut(s)	597
Csp6I	GTAC	2 cut(s)	188, 750
CviAII	CATG	2 cut(s)	398, 515
CviQI	GTAC	2 cut(s)	188, 750
DdeI	CTNAG	3 cut(s)	329, 690, 1034
DpnI	GATC	3 cut(s)	224, 320, 525
DpnII	GATC	3 cut(s)	222, 318, 523
EaeI	YGGCCR	1 cut(s)	129
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Ecl136II	GAGCTC	1 cut(s)	328
Eco130I	CCWWGG	1 cut(s)	702
Eco147I	AGGCCT	1 cut(s)	1039
Eco24I	GRGCYC	2 cut(s)	330, 371
Eco47I	GGWCC	1 cut(s)	966
Eco47III	AGCGCT	2 cut(s)	209, 1152
Eco53kI	GAGCTC	1 cut(s)	328
Eco57I	CTGAAG	2 cut(s)	721, 890
EcoICRI	GAGCTC	1 cut(s)	328
EcoO109I	RGGNCCY	1 cut(s)	367
EcoRII	CCWGG	1 cut(s)	968
EcoT14I	CCWWGG	1 cut(s)	702
EcoT22I	ATGCAT	1 cut(s)	520
EcoT38I	GRGCYC	2 cut(s)	330, 371
ErhI	CCWWGG	1 cut(s)	702
FaeI	CATG	2 cut(s)	401, 518
FaqI	GGGAC	1 cut(s)	223
FatI	CATG	2 cut(s)	397, 514
FauI	CCCGC	1 cut(s)	949
FbaI	TGATCA	1 cut(s)	318
Fnu4HI	GCNGC	2 cut(s)	342, 675
FokI	GGATG	3 cut(s)	972, 1118, 1175
FriOI	GRGCYC	2 cut(s)	330, 371
Fsp4HI	GCNGC	2 cut(s)	342, 675
FspBI	CTAG	2 cut(s)	663, 780
GlaI	GCGC	3 cut(s)	209, 607, 1152
GluI	GCNGC	2 cut(s)	342, 675
GsaI	CCCAGC	1 cut(s)	208
GsuI	CTGGAG	2 cut(s)	519, 1128
HaeII	RGCGCY	2 cut(s)	211, 1154
HaeIII	GGCC	6 cut(s)	131, 369, 586, 637, 973, 1039
HapII	CCGG	2 cut(s)	220, 943
HgaI	GACGC	1 cut(s)	597
HhaI	GCGC	3 cut(s)	210, 608, 1153
Hin1I	GRCGYC	1 cut(s)	267
Hin1II	CATG	2 cut(s)	401, 518
Hin6I	GCGC	3 cut(s)	208, 606, 1151
HinP1I	GCGC	3 cut(s)	208, 606, 1151
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HindIII	AAGCTT	1 cut(s)	902
HinfI	GANTC	6 cut(s)	92, 176, 384, 389, 791, 1079
HpaII	CCGG	2 cut(s)	220, 943
HphI	GGTGA	2 cut(s)	476, 525
Hpy166II	GTNNAC	2 cut(s)	349, 533
Hpy188I	TCNGA	3 cut(s)	262, 394, 523
Hpy188III	TCNNGA	4 cut(s)	168, 220, 685, 1145
Hpy8I	GTNNAC	2 cut(s)	349, 533
Hpy99I	CGWCG	6 cut(s)	248, 251, 266, 269, 272, 613
HpyAV	CCTTC	4 cut(s)	364, 461, 860, 1075
HpyCH4III	ACNGT	2 cut(s)	361, 478
HpyCH4IV	ACGT	5 cut(s)	111, 156, 243, 267, 1157
HpyCH4V	TGCA	5 cut(s)	106, 151, 344, 518, 1076
HpyF10VI	GCNNNNNNNGC	4 cut(s)	189, 592, 1082, 1148
HpyF3I	CTNAG	3 cut(s)	329, 690, 1034
HpySE526I	ACGT	5 cut(s)	111, 156, 243, 267, 1157
Hsp92I	GRCGYC	1 cut(s)	267
Hsp92II	CATG	2 cut(s)	401, 518
HspAI	GCGC	3 cut(s)	208, 606, 1151
Kpn2I	TCCGGA	1 cut(s)	219
Ksp22I	TGATCA	1 cut(s)	318
Kzo9I	GATC	3 cut(s)	222, 318, 523
LmnI	GCTCC	2 cut(s)	325, 1147
Lsp1109I	GCAGC	2 cut(s)	328, 661
LweI	GCATC	1 cut(s)	527
MaeI	CTAG	2 cut(s)	663, 780
MaeII	ACGT	5 cut(s)	111, 156, 243, 267, 1157
MaeIII	GTNAC	2 cut(s)	484, 548
MalI	GATC	3 cut(s)	224, 320, 525
MboI	GATC	3 cut(s)	222, 318, 523
MboII	GAAGA	4 cut(s)	19, 55, 69, 1066
MhlI	GDGCHC	3 cut(s)	205, 330, 371
MluCI	AATT	5 cut(s)	44, 73, 578, 825, 1016
MlyI	GAGTC	2 cut(s)	86, 393
MmeI	TCCRAC	2 cut(s)	285, 1140
Mph1103I	ATGCAT	1 cut(s)	520
MroI	TCCGGA	1 cut(s)	219
MroXI	GAANNNNTTC	1 cut(s)	734
MseI	TTAA	4 cut(s)	59, 86, 1050, 1186
MspA1I	CMGCKG	2 cut(s)	910, 1085
MspI	CCGG	2 cut(s)	220, 943
MspR9I	CCNGG	1 cut(s)	970
Mva1269I	GAATGC	1 cut(s)	595
MvaI	CCWGG	1 cut(s)	970
MvnI	CGCG	2 cut(s)	608, 627
MwoI	GCNNNNNNNGC	4 cut(s)	189, 592, 1082, 1148
NdeII	GATC	3 cut(s)	222, 318, 523
NlaIII	CATG	2 cut(s)	401, 518
NlaIV	GGNNCC	1 cut(s)	369
NmeAIII	GCCGAG	1 cut(s)	107
NmuCI	GTSAC	1 cut(s)	548
NsiI	ATGCAT	1 cut(s)	520
NspV	TTCGAA	1 cut(s)	803
PceI	AGGCCT	1 cut(s)	1039
PctI	GAATGC	1 cut(s)	595
PdmI	GAANNNNTTC	1 cut(s)	734
PfeI	GAWTC	4 cut(s)	176, 389, 791, 1079
PflFI	GACNNNGTC	1 cut(s)	266
PkrI	GCNGC	2 cut(s)	343, 676
PleI	GAGTC	2 cut(s)	86, 392
PpsI	GAGTC	2 cut(s)	86, 392
Psp124BI	GAGCTC	1 cut(s)	330
Psp1406I	AACGTT	2 cut(s)	156, 1157
Psp6I	CCWGG	1 cut(s)	968
PspFI	CCCAGC	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	968
PspN4I	GGNNCC	1 cut(s)	369
PspOMI	GGGCCC	1 cut(s)	367
PspPI	GGNCC	5 cut(s)	367, 368, 585, 635, 966
PstI	CTGCAG	1 cut(s)	346
PsyI	GACNNNGTC	1 cut(s)	266
PvuII	CAGCTG	2 cut(s)	910, 1085
RsaI	GTAC	2 cut(s)	189, 751
RsaNI	GTAC	2 cut(s)	188, 750
SacI	GAGCTC	1 cut(s)	330
SaqAI	TTAA	4 cut(s)	59, 86, 1050, 1186
SatI	GCNGC	2 cut(s)	342, 675
Sau3AI	GATC	3 cut(s)	222, 318, 523
Sau96I	GGNCC	5 cut(s)	367, 368, 585, 635, 966
SchI	GAGTC	2 cut(s)	86, 393
ScrFI	CCNGG	1 cut(s)	970
SduI	GDGCHC	3 cut(s)	205, 330, 371
SfaNI	GCATC	1 cut(s)	527
SfcI	CTRYAG	3 cut(s)	342, 433, 477
SfuI	TTCGAA	1 cut(s)	803
SinI	GGWCC	1 cut(s)	966
Sse9I	AATT	5 cut(s)	44, 73, 578, 825, 1016
SseBI	AGGCCT	1 cut(s)	1039
SsiI	CCGC	3 cut(s)	289, 536, 956
SspMI	CTAG	2 cut(s)	663, 780
SstI	GAGCTC	1 cut(s)	330
StuI	AGGCCT	1 cut(s)	1039
StyD4I	CCNGG	1 cut(s)	968
StyI	CCWWGG	1 cut(s)	702
TaaI	ACNGT	2 cut(s)	361, 478
TaiI	ACGT	5 cut(s)	114, 159, 246, 270, 1160
TaqI	TCGA	3 cut(s)	387, 684, 803
TasI	AATT	5 cut(s)	44, 73, 578, 825, 1016
TfiI	GAWTC	4 cut(s)	176, 389, 791, 1079
Tru1I	TTAA	4 cut(s)	59, 86, 1050, 1186
Tru9I	TTAA	4 cut(s)	59, 86, 1050, 1186
TscAI	CASTG	2 cut(s)	205, 366
TseFI	GTSAC	1 cut(s)	548
TseI	GCWGC	2 cut(s)	341, 674
Tsp45I	GTSAC	1 cut(s)	548
TspDTI	ATGAA	6 cut(s)	44, 402, 437, 503, 588, 1057
TspGWI	ACGGA	3 cut(s)	7, 325, 1089
TspRI	CASTG	2 cut(s)	205, 366
Tth111I	GACNNNGTC	1 cut(s)	266
VpaK11BI	GGWCC	1 cut(s)	966
XapI	RAATTY	2 cut(s)	578, 825
XcmI	CCANNNNNNNNNTGG	1 cut(s)	976
XmnI	GAANNNNTTC	1 cut(s)	734
XspI	CTAG	2 cut(s)	663, 780
ZraI	GACGTC	1 cut(s)	268
Zsp2I	ATGCAT	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.