Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012804

Physical Location & Seq

Genomic Coordinates Reverse (-)

60894433 .. 60896176

Gene Structure 1744 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26931

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGAGCAGAAGCAGTGGCGGTGTCCCCATCTCCGTCCTCCTCTTCCTTTACCTCCTCCAATTTCCCCTCCAATTCATTCTAGCTTTTAATTCCTCCCACATCTTGCAGGACGTCTTGAAGCAAATCACGGTCGAGCAGAGGTGGGATTTGCAGAGCGTTAGGATTTCCAGATTGGATACCGGCAAAGTACGCTTCGGGAGTGCCCAGCGCTACGAATTCCGGATCGGATTCGGCAAGTCCCACGTCGTCGTCTGGTTCCCCGACGACGTCGCTTCTTGGAGAAAGTTCCGCAAACCAAGAACCCATTTTGCCTCTCTTGTGAAGGAGCTCAGTTCCATGGCTGCAGTTGACACCTTCAAAGTGGAGGGGCCGTTTGAGTTACGAGTCGGTTCAGACCATGACCTCTCCCTTTCATTGCCGATGAACACTACGTATAGTAGAGGGTTGAAAAGGGTGCTTGTTGGTGAAGGCATTACTGTTGAGGTAACGAGGGCAACAGAAGTTTCTGTGTTTCATGCATCTGATCTGGGTGTGGCGATGAACGGAAGTGATACTATTGACAAGGAGAAAAGTGAGTTTTGGCCATTTGGGCATTCATATTGCGCGCCATTAGTTCCCATTCGCGTTGTAGGGCCTGCATCGTTGGTTGCATACAGGACTAGAAATCCTGCTGCTCACATTGAAACTAAATTTATGTCCAAGGATATAATTGAGTTGTTGCCAGAGAAATGCTTCAGCAGTCATCGTACATACAAGAAGCAGAAGCAGTCTTGCCCCATTGATTCTTTAAGTTTGAAAATATCTATGCTGGAAAGAATTTGGAAAGGCTTTCTTGGTGATAGGATTCGACAAAAAGGATTGTCCGGATTTCTTGAAGCAAAAATCAAAGCCTCAACTATTGTTTGGTTCAAGCTTCAGCTGGAAAGGGATTTTAGGAGGAAGGGGATACTCCAGCAGGACATTGCGGGATGGAGGACCAGGTCAGCTGTGGAAAGGGTTTGGTTTGAAGTTTTGGCGGGAGTTGAATTAGAGAGGTTGAGGCTGAGGCCTATCTTGGTTAAAAAGATAAGGCCATTCATTATAGCAGATTCAGTTGAATGGGATAATCCTTCGAATATTTCCTTTACCAAATCCCAATCTATCCTTGTCGCTCCTGAAGCGCTTACGTTGGATGTGAAATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 map02024 map03060

Pfam Domains

Protein Families

Peptidase_S24 Peptidase_S26

Protein Analysis

394

Amino Acids

44.93

Weight (kDa)

9.82

Isoelectric Point (pI)

45.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012804)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47310
fragaria_vesca	FvH4_2g40681 FvH4_2g40681 FvH4_2g40681
malus_domestica	MD08G1040400.v1.1 MD15G1034900.v1.1
prunus_persica	Prupe.1G389000_v2.0.a1 Prupe.1G389000_v2.0.a1
pyrus_communis	pycom08g03260 pycom15g03210
rosa_chinensis	RchiOBHm_Chr6g0299921
rosa_multiflora	Rmu_co8499763.1_g000002
rosa_roxburghii	Rroxscaffold_7G00168270
rosa_rugosa	Rorug06G0293200
rosa_samantha	Rh6AG404600 Rh6BG412900 Rh6CG419000 Rh6DG405800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	114, 270
AccII	CGCG	2 cut(s)	605, 624
AccIII	TCCGGA	2 cut(s)	219, 863
AciI	CCGC	4 cut(s)	18, 289, 965, 1016
AclWI	GGATC	1 cut(s)	230
AcoI	YGGCCR	1 cut(s)	581
AcsI	RAATTY	3 cut(s)	215, 689, 816
AcuI	CTGAAG	3 cut(s)	718, 899, 1176
AcyI	GRCGYC	2 cut(s)	111, 267
AfaI	GTAC	2 cut(s)	189, 748
AfeI	AGCGCT	2 cut(s)	209, 1161
AjiI	CACGTC	1 cut(s)	244
AjnI	CCWGG	1 cut(s)	977
AluBI	AGCT	5 cut(s)	83, 328, 913, 919, 986
AluI	AGCT	5 cut(s)	83, 328, 913, 919, 986
Alw21I	GWGCWC	1 cut(s)	330
AlwI	GGATC	1 cut(s)	230
Aor13HI	TCCGGA	2 cut(s)	219, 863
Aor51HI	AGCGCT	2 cut(s)	209, 1161
AoxI	GGCC	5 cut(s)	368, 581, 632, 1046, 1070
ApeKI	GCWGC	2 cut(s)	341, 671
ApoI	RAATTY	3 cut(s)	215, 689, 816
Asp700I	GAANNNNTTC	1 cut(s)	731
AspLEI	GCGC	4 cut(s)	210, 605, 607, 1162
AspS9I	GGNCC	3 cut(s)	368, 632, 975
AsuHPI	GGTGA	2 cut(s)	476, 848
AsuII	TTCGAA	1 cut(s)	1112
AvaII	GGWCC	1 cut(s)	975
BaeGI	GKGCMC	1 cut(s)	205
BalI	TGGCCA	1 cut(s)	583
BanII	GRGCYC	1 cut(s)	330
Bbv12I	GWGCWC	1 cut(s)	330
BbvCI	CCTCAGC	1 cut(s)	1043
BbvI	GCAGC	2 cut(s)	328, 658
BccI	CCATC	2 cut(s)	35, 963
BceAI	ACGGC	1 cut(s)	355
BciT130I	CCWGG	1 cut(s)	979
BciVI	GTATCC	2 cut(s)	169, 939
BfaI	CTAG	2 cut(s)	80, 660
BfmI	CTRYAG	1 cut(s)	342
BfoI	RGCGCY	2 cut(s)	211, 1163
BfuI	GTATCC	2 cut(s)	169, 939
BglI	GCCNNNNNGGC	1 cut(s)	589
BisI	GCNGC	2 cut(s)	342, 672
BlsI	GCNGC	2 cut(s)	343, 673
Bme1390I	CCNGG	1 cut(s)	979
Bme18I	GGWCC	1 cut(s)	975
BmgBI	CACGTC	1 cut(s)	244
BmgT120I	GGNCC	3 cut(s)	368, 632, 975
BmiI	GGNNCC	2 cut(s)	257, 369
BmrFI	CCNGG	1 cut(s)	979
BmsI	GCATC	2 cut(s)	527, 647
BpmI	CTGGAG	1 cut(s)	935
Bpu10I	CCTNAGC	1 cut(s)	1043
Bpu14I	TTCGAA	1 cut(s)	1112
BsaAI	YACGTR	1 cut(s)	432
BsaHI	GRCGYC	2 cut(s)	111, 267
BsaJI	CCNNGG	2 cut(s)	336, 699
BsaWI	WCCGGW	2 cut(s)	219, 863
BsaXI	ACNNNNNCTCC	2 cut(s)	356, 386
Bse118I	RCCGGY	1 cut(s)	179
Bse3DI	GCAATG	2 cut(s)	413, 960
BseAI	TCCGGA	2 cut(s)	219, 863
BseBI	CCWGG	1 cut(s)	979
BseDI	CCNNGG	2 cut(s)	336, 699
BseGI	GGATG	2 cut(s)	974, 1177
BseMI	GCAATG	2 cut(s)	413, 960
BseMII	CTCAG	2 cut(s)	343, 1034
BsePI	GCGCGC	1 cut(s)	603
BseRI	GAGGAG	2 cut(s)	29, 44
BseSI	GKGCMC	1 cut(s)	205
BseXI	GCAGC	2 cut(s)	328, 658
BseYI	CCCAGC	1 cut(s)	204
Bsh1236I	CGCG	2 cut(s)	605, 624
Bsh1285I	CGRYCG	1 cut(s)	132
BshFI	GGCC	5 cut(s)	370, 583, 634, 1048, 1072
BsiEI	CGRYCG	1 cut(s)	132
BsiHKAI	GWGCWC	1 cut(s)	330
BsiSI	CCGG	3 cut(s)	180, 220, 864
BslFI	GGGAC	2 cut(s)	8, 223
BsmFI	GGGAC	2 cut(s)	8, 223
BsmI	GAATGC	1 cut(s)	592
BsnI	GGCC	5 cut(s)	370, 583, 634, 1048, 1072
Bsp119I	TTCGAA	1 cut(s)	1112
Bsp1286I	GDGCHC	2 cut(s)	205, 330
Bsp13I	TCCGGA	2 cut(s)	219, 863
Bsp143I	GATC	2 cut(s)	222, 523
Bsp19I	CCATGG	1 cut(s)	336
BspACI	CCGC	4 cut(s)	18, 289, 965, 1016
BspANI	GGCC	5 cut(s)	370, 583, 634, 1048, 1072
BspCNI	CTCAG	2 cut(s)	342, 1035
BspEI	TCCGGA	2 cut(s)	219, 863
BspFNI	CGCG	2 cut(s)	605, 624
BspLI	GGNNCC	2 cut(s)	257, 369
BspMAI	CTGCAG	1 cut(s)	346
BspPI	GGATC	1 cut(s)	230
BspT104I	TTCGAA	1 cut(s)	1112
BsrDI	GCAATG	2 cut(s)	413, 960
BsrFI	RCCGGY	1 cut(s)	179
BssAI	RCCGGY	1 cut(s)	179
BssECI	CCNNGG	2 cut(s)	336, 699
BssHII	GCGCGC	1 cut(s)	603
BssMI	GATC	2 cut(s)	222, 523
BssNI	GRCGYC	2 cut(s)	111, 267
BssT1I	CCWWGG	2 cut(s)	336, 699
Bst2UI	CCWGG	1 cut(s)	979
Bst4CI	ACNGT	2 cut(s)	130, 478
Bst6I	CTCTTC	1 cut(s)	47
BstACI	GRCGYC	2 cut(s)	111, 267
BstBAI	YACGTR	1 cut(s)	432
BstBI	TTCGAA	1 cut(s)	1112
BstC8I	GCNNGC	2 cut(s)	605, 636
BstDEI	CTNAG	2 cut(s)	329, 1043
BstDSI	CCRYGG	1 cut(s)	336
BstF5I	GGATG	2 cut(s)	974, 1177
BstFNI	CGCG	2 cut(s)	605, 624
BstH2I	RGCGCY	2 cut(s)	211, 1163
BstHHI	GCGC	4 cut(s)	210, 605, 607, 1162
BstKTI	GATC	2 cut(s)	225, 526
BstMBI	GATC	2 cut(s)	222, 523
BstMCI	CGRYCG	1 cut(s)	132
BstMWI	GCNNNNNNNGC	3 cut(s)	189, 589, 1157
BstNI	CCWGG	1 cut(s)	979
BstSCI	CCNGG	1 cut(s)	977
BstSFI	CTRYAG	1 cut(s)	342
BstSLI	GKGCMC	1 cut(s)	205
BstSNI	TACGTA	1 cut(s)	432
BstUI	CGCG	2 cut(s)	605, 624
BstV1I	GCAGC	2 cut(s)	328, 658
BsuI	GTATCC	2 cut(s)	169, 939
BsuRI	GGCC	5 cut(s)	370, 583, 634, 1048, 1072
BtgI	CCRYGG	1 cut(s)	336
BtgZI	GCGATG	1 cut(s)	551
BtrI	CACGTC	1 cut(s)	244
BtsCI	GGATG	2 cut(s)	974, 1177
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	1 cut(s)	19
Cac8I	GCNNGC	2 cut(s)	605, 636
CfoI	GCGC	4 cut(s)	210, 605, 607, 1162
Cfr10I	RCCGGY	1 cut(s)	179
Cfr13I	GGNCC	3 cut(s)	368, 632, 975
CsiI	ACCWGGT	1 cut(s)	977
Csp6I	GTAC	2 cut(s)	188, 747
CviAII	CATG	3 cut(s)	337, 398, 515
CviQI	GTAC	2 cut(s)	188, 747
DdeI	CTNAG	2 cut(s)	329, 1043
DpnI	GATC	2 cut(s)	224, 525
DpnII	GATC	2 cut(s)	222, 523
EaeI	YGGCCR	1 cut(s)	581
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
Ecl136II	GAGCTC	1 cut(s)	328
Eco105I	TACGTA	1 cut(s)	432
Eco130I	CCWWGG	2 cut(s)	336, 699
Eco147I	AGGCCT	1 cut(s)	1048
Eco24I	GRGCYC	1 cut(s)	330
Eco47I	GGWCC	1 cut(s)	975
Eco47III	AGCGCT	2 cut(s)	209, 1161
Eco53kI	GAGCTC	1 cut(s)	328
Eco57I	CTGAAG	3 cut(s)	718, 899, 1176
EcoICRI	GAGCTC	1 cut(s)	328
EcoO109I	RGGNCCY	1 cut(s)	632
EcoRI	GAATTC	1 cut(s)	215
EcoRII	CCWGG	1 cut(s)	977
EcoT14I	CCWWGG	2 cut(s)	336, 699
EcoT22I	ATGCAT	1 cut(s)	520
EcoT38I	GRGCYC	1 cut(s)	330
ErhI	CCWWGG	2 cut(s)	336, 699
FaeI	CATG	3 cut(s)	340, 401, 518
FalI	AAGNNNNNCTT	2 cut(s)	816, 848
FaqI	GGGAC	2 cut(s)	8, 223
FatI	CATG	3 cut(s)	336, 397, 514
FauI	CCCGC	2 cut(s)	958, 1009
Fnu4HI	GCNGC	2 cut(s)	342, 672
FokI	GGATG	1 cut(s)	981
FriOI	GRGCYC	1 cut(s)	330
Fsp4HI	GCNGC	2 cut(s)	342, 672
FspBI	CTAG	2 cut(s)	80, 660
GlaI	GCGC	4 cut(s)	209, 604, 606, 1161
GluI	GCNGC	2 cut(s)	342, 672
GsaI	CCCAGC	1 cut(s)	208
GsuI	CTGGAG	1 cut(s)	935
HaeII	RGCGCY	2 cut(s)	211, 1163
HaeIII	GGCC	5 cut(s)	370, 583, 634, 1048, 1072
HapII	CCGG	3 cut(s)	180, 220, 864
HhaI	GCGC	4 cut(s)	210, 605, 607, 1162
Hin1I	GRCGYC	2 cut(s)	111, 267
Hin1II	CATG	3 cut(s)	340, 401, 518
Hin6I	GCGC	4 cut(s)	208, 603, 605, 1160
HinP1I	GCGC	4 cut(s)	208, 603, 605, 1160
HincII	GTYRAC	1 cut(s)	349
HindII	GTYRAC	1 cut(s)	349
HindIII	AAGCTT	1 cut(s)	911
HinfI	GANTC	5 cut(s)	228, 384, 782, 844, 1088
HpaII	CCGG	3 cut(s)	180, 220, 864
HphI	GGTGA	2 cut(s)	476, 848
Hpy166II	GTNNAC	1 cut(s)	349
Hpy188I	TCNGA	3 cut(s)	227, 394, 523
Hpy188III	TCNNGA	7 cut(s)	115, 168, 196, 220, 864, 872, 1154
Hpy8I	GTNNAC	1 cut(s)	349
Hpy99I	CGWCG	5 cut(s)	248, 251, 266, 269, 272
HpyAV	CCTTC	5 cut(s)	316, 364, 461, 934, 1119
HpyCH4III	ACNGT	2 cut(s)	130, 478
HpyCH4IV	ACGT	5 cut(s)	111, 243, 267, 431, 1166
HpyCH4V	TGCA	6 cut(s)	106, 151, 344, 518, 638, 650
HpyF10VI	GCNNNNNNNGC	3 cut(s)	189, 589, 1157
HpyF3I	CTNAG	2 cut(s)	329, 1043
HpySE526I	ACGT	5 cut(s)	111, 243, 267, 431, 1166
Hsp92I	GRCGYC	2 cut(s)	111, 267
Hsp92II	CATG	3 cut(s)	340, 401, 518
HspAI	GCGC	4 cut(s)	208, 603, 605, 1160
Kpn2I	TCCGGA	2 cut(s)	219, 863
Kzo9I	GATC	2 cut(s)	222, 523
LmnI	GCTCC	2 cut(s)	325, 1156
Lsp1109I	GCAGC	2 cut(s)	328, 658
LweI	GCATC	2 cut(s)	527, 647
MabI	ACCWGGT	1 cut(s)	977
MaeI	CTAG	2 cut(s)	80, 660
MaeII	ACGT	5 cut(s)	111, 243, 267, 431, 1166
MaeIII	GTNAC	2 cut(s)	378, 484
MalI	GATC	2 cut(s)	224, 525
MboI	GATC	2 cut(s)	222, 523
MboII	GAAGA	1 cut(s)	34
MhlI	GDGCHC	2 cut(s)	205, 330
MlsI	TGGCCA	1 cut(s)	583
MluCI	AATT	8 cut(s)	59, 71, 88, 215, 689, 708, 816, 1025
MluNI	TGGCCA	1 cut(s)	583
MlyI	GAGTC	1 cut(s)	393
MmeI	TCCRAC	1 cut(s)	1149
Mox20I	TGGCCA	1 cut(s)	583
Mph1103I	ATGCAT	1 cut(s)	520
MroI	TCCGGA	2 cut(s)	219, 863
MroXI	GAANNNNTTC	1 cut(s)	731
MscI	TGGCCA	1 cut(s)	583
MseI	TTAA	3 cut(s)	87, 788, 1059
Msp20I	TGGCCA	1 cut(s)	583
MspA1I	CMGCKG	2 cut(s)	919, 986
MspI	CCGG	3 cut(s)	180, 220, 864
MspR9I	CCNGG	1 cut(s)	979
Mva1269I	GAATGC	1 cut(s)	592
MvaI	CCWGG	1 cut(s)	979
MvnI	CGCG	2 cut(s)	605, 624
MwoI	GCNNNNNNNGC	3 cut(s)	189, 589, 1157
NcoI	CCATGG	1 cut(s)	336
NdeII	GATC	2 cut(s)	222, 523
NlaIII	CATG	3 cut(s)	340, 401, 518
NlaIV	GGNNCC	2 cut(s)	257, 369
NsiI	ATGCAT	1 cut(s)	520
NspV	TTCGAA	1 cut(s)	1112
PauI	GCGCGC	1 cut(s)	603
PceI	AGGCCT	1 cut(s)	1048
PctI	GAATGC	1 cut(s)	592
PdmI	GAANNNNTTC	1 cut(s)	731
PfeI	GAWTC	4 cut(s)	228, 782, 844, 1088
PflFI	GACNNNGTC	2 cut(s)	266, 979
PkrI	GCNGC	2 cut(s)	343, 673
PleI	GAGTC	1 cut(s)	392
PpsI	GAGTC	1 cut(s)	392
Ppu21I	YACGTR	1 cut(s)	432
Psp124BI	GAGCTC	1 cut(s)	330
Psp6I	CCWGG	1 cut(s)	977
PspFI	CCCAGC	1 cut(s)	204
PspGI	CCWGG	1 cut(s)	977
PspN4I	GGNNCC	2 cut(s)	257, 369
PspPI	GGNCC	3 cut(s)	368, 632, 975
PstI	CTGCAG	1 cut(s)	346
PsyI	GACNNNGTC	2 cut(s)	266, 979
PteI	GCGCGC	1 cut(s)	603
PvuII	CAGCTG	2 cut(s)	919, 986
RsaI	GTAC	2 cut(s)	189, 748
RsaNI	GTAC	2 cut(s)	188, 747
SacI	GAGCTC	1 cut(s)	330
SaqAI	TTAA	3 cut(s)	87, 788, 1059
SatI	GCNGC	2 cut(s)	342, 672
Sau3AI	GATC	2 cut(s)	222, 523
Sau96I	GGNCC	3 cut(s)	368, 632, 975
SchI	GAGTC	1 cut(s)	393
ScrFI	CCNGG	1 cut(s)	979
SduI	GDGCHC	2 cut(s)	205, 330
SexAI	ACCWGGT	1 cut(s)	977
SfaNI	GCATC	2 cut(s)	527, 647
SfcI	CTRYAG	1 cut(s)	342
SfuI	TTCGAA	1 cut(s)	1112
SinI	GGWCC	1 cut(s)	975
SnaBI	TACGTA	1 cut(s)	432
Sse9I	AATT	8 cut(s)	59, 71, 88, 215, 689, 708, 816, 1025
SseBI	AGGCCT	1 cut(s)	1048
SsiI	CCGC	4 cut(s)	18, 289, 965, 1016
SspI	AATATT	1 cut(s)	1117
SspMI	CTAG	2 cut(s)	80, 660
SstI	GAGCTC	1 cut(s)	330
StuI	AGGCCT	1 cut(s)	1048
StyD4I	CCNGG	1 cut(s)	977
StyI	CCWWGG	2 cut(s)	336, 699
TaaI	ACNGT	2 cut(s)	130, 478
TaiI	ACGT	5 cut(s)	114, 246, 270, 434, 1169
TaqI	TCGA	3 cut(s)	132, 847, 1112
TasI	AATT	8 cut(s)	59, 71, 88, 215, 689, 708, 816, 1025
TfiI	GAWTC	4 cut(s)	228, 782, 844, 1088
Tru1I	TTAA	3 cut(s)	87, 788, 1059
Tru9I	TTAA	3 cut(s)	87, 788, 1059
TscAI	CASTG	1 cut(s)	19
TseI	GCWGC	2 cut(s)	341, 671
TspDTI	ATGAA	7 cut(s)	64, 402, 437, 503, 554, 585, 1066
TspGWI	ACGGA	2 cut(s)	22, 558
TspRI	CASTG	1 cut(s)	19
Tth111I	GACNNNGTC	2 cut(s)	266, 979
VpaK11BI	GGWCC	1 cut(s)	975
XapI	RAATTY	3 cut(s)	215, 689, 816
XcmI	CCANNNNNNNNNTGG	1 cut(s)	985
XmnI	GAANNNNTTC	1 cut(s)	731
XspI	CTAG	2 cut(s)	80, 660
ZraI	GACGTC	2 cut(s)	112, 268
Zsp2I	ATGCAT	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.