AT1G47410

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012357
Physical Location & Seq
Forward (+)
17394072 .. 17395673
1602 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G47410.1

Sequence Viewer

Length: 570 bp
ATGGTATTTTGCGGTGACGACGTTGCCACAGGGGTGAGAGATGCTATCACTTATTGTTACAGATGCAAAGGCAGAAAAGTTACACTTTCTGATCACGAAGCCGATGATGATAACAAGCCTATCGGGGATTTTGACTACGACCATGAAGTTGTTGTTTTCGAGATCAGAAGTCGGGCGATGGAAAAACTAAGGAAGAAGCGAAGGACAGGAATGGAGGGGCTAACTTACAAATTCGTAAAAGAATATGACATCGAAAACGAATTCTGTTCGGTAAGAAGCAGTTTTTCGGAATGTTGCATGAGTGATATCAGCATAGAAGGATACATGACAGCGAAAACTGAGTTCTCAAGGAGTTCAAGCTTGAAAGGTTTAGAGCTGGAGAATCAATGGAAGATGCATTACGTTAATGAAATTAAGAAAGGATCAGTGATTCAAGAGTTCTGTCATTGCCAAGGATGGCCATTTGGATTGGGACGAAAAGCTGCGTTGCTTCCACCGCTTCCAAAGTCACCTGCAGAGTCATGGTCTTGGAGGAAGCCTACAAGAGTTACTCCAGTTCCTTTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

21.76

Weight (kDa)

7.54

Isoelectric Point (pI)

62.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012357)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47410 AT1G47410
fragaria_vesca FvH4_2g34660 FvH4_2g34701
malus_domestica MD08G1103700.v1.1 MD15G1085000.v1.1
prunus_persica Prupe.1G438800_v2.0.a1
pyrus_communis pycom08g08510 pycom15g08030
rosa_chinensis RchiOBHm_Chr6g0307431
rosa_laevigata RLG00000009861 RLG00000010714
rosa_multiflora Rmu_sc0000031.1_g000017
rosa_roxburghii Rroxscaffold_7G00161000
rosa_rugosa Rorug06G0358600
rosa_samantha Rh6BG430500 Rh6CG484300 Rh6DG471000
rosa_wichuraiana Rw6G040900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 520
Acc36I ACCTGC 1 cut(s) 520
AciI CCGC 2 cut(s) 12, 497
AclWI GGATC 1 cut(s) 430
AcoI YGGCCR 1 cut(s) 458
AcsI RAATTY 2 cut(s) 230, 260
AgsI TTSAA 3 cut(s) 357, 364, 434
AleI CACNNNNGTG 1 cut(s) 32
AluBI AGCT 3 cut(s) 360, 376, 482
AluI AGCT 3 cut(s) 360, 376, 482
AlwI GGATC 1 cut(s) 430
AoxI GGCC 1 cut(s) 458
ApeKI GCWGC 1 cut(s) 482
ApoI RAATTY 2 cut(s) 230, 260
AsuHPI GGTGA 3 cut(s) 26, 46, 501
BalI TGGCCA 1 cut(s) 460
BarI GAAGNNNNNNTAC 2 cut(s) 383, 415
BbvI GCAGC 1 cut(s) 469
BccI CCATC 2 cut(s) 172, 450
BciVI GTATCC 1 cut(s) 314
BclI TGATCA 1 cut(s) 91
BfmI CTRYAG 1 cut(s) 513
BfuAI ACCTGC 1 cut(s) 520
BfuI GTATCC 1 cut(s) 314
BisI GCNGC 1 cut(s) 483
BlsI GCNGC 1 cut(s) 484
BmsI GCATC 3 cut(s) 31, 53, 384
BpmI CTGGAG 2 cut(s) 398, 537
BpuEI CTTGAG 1 cut(s) 331
BsaJI CCNNGG 1 cut(s) 451
Bse1I ACTGG 1 cut(s) 554
Bse3DI GCAATG 1 cut(s) 445
BseDI CCNNGG 1 cut(s) 451
BseGI GGATG 1 cut(s) 461
BseMI GCAATG 1 cut(s) 445
BseMII CTCAG 1 cut(s) 330
BseNI ACTGG 1 cut(s) 554
BseXI GCAGC 1 cut(s) 469
BshFI GGCC 1 cut(s) 460
BslFI GGGAC 1 cut(s) 486
BsmFI GGGAC 1 cut(s) 486
BsnI GGCC 1 cut(s) 460
Bsp143I GATC 3 cut(s) 91, 162, 422
BspACI CCGC 2 cut(s) 12, 497
BspANI GGCC 1 cut(s) 460
BspCNI CTCAG 1 cut(s) 331
BspMAI CTGCAG 1 cut(s) 517
BspMI ACCTGC 1 cut(s) 520
BspPI GGATC 1 cut(s) 430
BsrDI GCAATG 1 cut(s) 445
BsrI ACTGG 1 cut(s) 554
BssECI CCNNGG 1 cut(s) 451
BssMI GATC 3 cut(s) 91, 162, 422
BssT1I CCWWGG 1 cut(s) 451
BstDEI CTNAG 2 cut(s) 188, 339
BstF5I GGATG 1 cut(s) 461
BstKTI GATC 3 cut(s) 94, 165, 425
BstMBI GATC 3 cut(s) 91, 162, 422
BstMWI GCNNNNNNNGC 1 cut(s) 496
BstSFI CTRYAG 1 cut(s) 513
BstV1I GCAGC 1 cut(s) 469
BsuI GTATCC 1 cut(s) 314
BsuRI GGCC 1 cut(s) 460
BtgZI GCGATG 1 cut(s) 191
BtsCI GGATG 1 cut(s) 461
BtsIMutI CAGTG 1 cut(s) 432
BveI ACCTGC 1 cut(s) 520
CviAII CATG 4 cut(s) 143, 298, 325, 522
CviJI RGCY 8 cut(s) 101, 118, 220, 360, 376, 460, 482, 538
CviKI_1 RGCY 8 cut(s) 101, 118, 220, 360, 376, 460, 482, 538
DdeI CTNAG 2 cut(s) 188, 339
DpnI GATC 3 cut(s) 93, 164, 424
DpnII GATC 3 cut(s) 91, 162, 422
EaeI YGGCCR 1 cut(s) 458
Eco130I CCWWGG 1 cut(s) 451
Eco32I GATATC 1 cut(s) 307
EcoRI GAATTC 1 cut(s) 260
EcoRV GATATC 1 cut(s) 307
EcoT14I CCWWGG 1 cut(s) 451
EcoT22I ATGCAT 1 cut(s) 399
ErhI CCWWGG 1 cut(s) 451
FaeI CATG 4 cut(s) 146, 301, 328, 525
FaiI YATR 6 cut(s) 144, 246, 299, 314, 326, 523
FalI AAGNNNNNCTT 2 cut(s) 69, 101
FaqI GGGAC 1 cut(s) 486
FatI CATG 4 cut(s) 142, 297, 324, 521
FbaI TGATCA 1 cut(s) 91
Fnu4HI GCNGC 1 cut(s) 483
FokI GGATG 1 cut(s) 468
Fsp4HI GCNGC 1 cut(s) 483
GluI GCNGC 1 cut(s) 483
GsuI CTGGAG 2 cut(s) 398, 537
HaeIII GGCC 1 cut(s) 460
Hin1II CATG 4 cut(s) 146, 301, 328, 525
HindIII AAGCTT 1 cut(s) 358
HinfI GANTC 3 cut(s) 382, 430, 518
HphI GGTGA 3 cut(s) 26, 46, 501
Hpy188I TCNGA 3 cut(s) 91, 167, 289
Hpy188III TCNNGA 3 cut(s) 95, 160, 434
Hpy99I CGWCG 1 cut(s) 23
HpyAV CCTTC 2 cut(s) 195, 311
HpyCH4IV ACGT 2 cut(s) 21, 402
HpyCH4V TGCA 4 cut(s) 66, 297, 397, 515
HpyF10VI GCNNNNNNNGC 1 cut(s) 496
HpyF3I CTNAG 2 cut(s) 188, 339
HpySE526I ACGT 2 cut(s) 21, 402
Hsp92II CATG 4 cut(s) 146, 301, 328, 525
Ksp22I TGATCA 1 cut(s) 91
Kzo9I GATC 3 cut(s) 91, 162, 422
LpnPI CCDG 4 cut(s) 15, 192, 362, 525
Lsp1109I GCAGC 1 cut(s) 469
LweI GCATC 3 cut(s) 31, 53, 384
MaeII ACGT 2 cut(s) 21, 402
MaeIII GTNAC 5 cut(s) 14, 56, 79, 507, 547
MalI GATC 3 cut(s) 93, 164, 424
MboI GATC 3 cut(s) 91, 162, 422
MboII GAAGA 2 cut(s) 205, 403
MlsI TGGCCA 1 cut(s) 460
MluCI AATT 3 cut(s) 230, 260, 411
MluNI TGGCCA 1 cut(s) 460
MlyI GAGTC 1 cut(s) 527
MnlI CCTC 2 cut(s) 208, 525
Mox20I TGGCCA 1 cut(s) 460
Mph1103I ATGCAT 1 cut(s) 399
MscI TGGCCA 1 cut(s) 460
MseI TTAA 2 cut(s) 405, 414
MslI CAYNNNNRTG 1 cut(s) 32
Msp20I TGGCCA 1 cut(s) 460
MwoI GCNNNNNNNGC 1 cut(s) 496
NdeII GATC 3 cut(s) 91, 162, 422
NlaIII CATG 4 cut(s) 146, 301, 328, 525
NmuCI GTSAC 2 cut(s) 14, 507
NsiI ATGCAT 1 cut(s) 399
OliI CACNNNNGTG 1 cut(s) 32
PaqCI CACCTGC 1 cut(s) 520
PfeI GAWTC 2 cut(s) 382, 430
PkrI GCNGC 1 cut(s) 484
PleI GAGTC 1 cut(s) 526
PpsI GAGTC 1 cut(s) 526
PstI CTGCAG 1 cut(s) 517
RseI CAYNNNNRTG 1 cut(s) 32
SaqAI TTAA 2 cut(s) 405, 414
SatI GCNGC 1 cut(s) 483
Sau3AI GATC 3 cut(s) 91, 162, 422
SchI GAGTC 1 cut(s) 527
SetI ASST 7 cut(s) 24, 362, 370, 378, 405, 484, 514
SfaNI GCATC 3 cut(s) 31, 53, 384
SfcI CTRYAG 1 cut(s) 513
SmiMI CAYNNNNRTG 1 cut(s) 32
SmlI CTYRAG 1 cut(s) 346
SmoI CTYRAG 1 cut(s) 346
Sse9I AATT 3 cut(s) 230, 260, 411
SsiI CCGC 2 cut(s) 12, 497
StyI CCWWGG 1 cut(s) 451
TaiI ACGT 2 cut(s) 24, 405
TaqI TCGA 2 cut(s) 159, 252
TasI AATT 3 cut(s) 230, 260, 411
TfiI GAWTC 2 cut(s) 382, 430
Tru1I TTAA 2 cut(s) 405, 414
Tru9I TTAA 2 cut(s) 405, 414
TscAI CASTG 1 cut(s) 432
TseFI GTSAC 2 cut(s) 14, 507
TseI GCWGC 1 cut(s) 482
Tsp45I GTSAC 2 cut(s) 14, 507
TspDTI ATGAA 2 cut(s) 159, 423
TspRI CASTG 1 cut(s) 432
XapI RAATTY 2 cut(s) 230, 260
Zsp2I ATGCAT 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.