Rh6BG430500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0012357
Physical Location & Seq
Forward (+)
65005375 .. 65006136
762 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG430500.1

Sequence Viewer

Length: 672 bp
ATGAGCATCTTTTATCATGAGGAGGAAGAGGTACCAAACCCTTCAAAAAGGTGCAAATTTCTTGCTGCATGTCTGATGGATGCGTTTTCCAACTGGAATATGTCCCGACGGCTTCAAACTGCGAGCCCAGAAGCAGAGGGTTACCCAACAAGTGATGACTTTGATGATGAACAGGAACTAATTGTATCTGCAATTCGGAGCCGTGCAATGGAAAAGCTGAAGCGCAAGCCGAGCGGTTTGAGTTTGACAGATAGCTTCTCCTGGGTCTACTCTACGAAAACTGGAGAATTATTCATAACTCAGAATGGAGTGCAAAAAAAAGAGGAGTGTGAAGATGAAGAAGCTGATGAGACTGAAGAGTTTTTAACAGTGGCAAGTTGCTTCTCTTGCTGCTCATCAAGTGCTGCTGCAAGTAAGGATGTGTTTCTCTCTGTCAAGACAAGCCTGTCAAGATGTTCGAGCCTTGATGGTTTTGAGTTCAACTTCAACGATTTTCAGAAGAGGCAGTCCATAATTCAACAGCTGTGCCATTGTGAGGGTTGGCCGTTTGGTCTCTGCCGAAAGGCTGTGTTGCTTCCACCTCTGCCCAAGTCTCCATCTGAGTCGTGGACATGGCGCAAAGGGATTGTAACAAAATCGAAGAGCTTACCCTCCAAATCACACACAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

223

Amino Acids

25.15

Weight (kDa)

5.39

Isoelectric Point (pI)

64.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012357)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47410 AT1G47410
fragaria_vesca FvH4_2g34660 FvH4_2g34701
malus_domestica MD08G1103700.v1.1 MD15G1085000.v1.1
prunus_persica Prupe.1G438800_v2.0.a1
pyrus_communis pycom08g08510 pycom15g08030
rosa_chinensis RchiOBHm_Chr6g0307431
rosa_laevigata RLG00000009861 RLG00000010714
rosa_multiflora Rmu_sc0000031.1_g000017
rosa_roxburghii Rroxscaffold_7G00161000
rosa_rugosa Rorug06G0358600
rosa_samantha Rh6BG430500 Rh6CG484300 Rh6DG471000
rosa_wichuraiana Rw6G040900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 445
Acc65I GGTACC 1 cut(s) 31
AccB1I GGYRCC 1 cut(s) 31
AccBSI CCGCTC 1 cut(s) 234
AccI GTMKAC 1 cut(s) 267
AciI CCGC 1 cut(s) 234
AcoI YGGCCR 1 cut(s) 542
AcsI RAATTY 1 cut(s) 56
AcuI CTGAAG 2 cut(s) 239, 375
AfaI GTAC 1 cut(s) 33
AfiI CCNNNNNNNGG 2 cut(s) 208, 535
AgsI TTSAA 5 cut(s) 45, 116, 481, 487, 518
AjnI CCWGG 1 cut(s) 260
AluBI AGCT 6 cut(s) 217, 255, 344, 523, 645, 669
AluI AGCT 6 cut(s) 217, 255, 344, 523, 645, 669
Alw26I GTCTC 3 cut(s) 344, 557, 597
AoxI GGCC 1 cut(s) 542
ApeKI GCWGC 4 cut(s) 65, 390, 404, 407
ApoI RAATTY 1 cut(s) 56
Asp718I GGTACC 1 cut(s) 31
AspLEI GCGC 2 cut(s) 225, 618
BanI GGYRCC 1 cut(s) 31
BanII GRGCYC 1 cut(s) 128
BbvI GCAGC 4 cut(s) 52, 377, 391, 394
BccI CCATC 3 cut(s) 70, 461, 604
BceAI ACGGC 3 cut(s) 125, 186, 529
BciT130I CCWGG 1 cut(s) 262
BcoDI GTCTC 3 cut(s) 344, 557, 597
BisI GCNGC 4 cut(s) 66, 391, 405, 408
BlsI GCNGC 4 cut(s) 67, 392, 406, 409
Bme1390I CCNGG 1 cut(s) 262
BmiI GGNNCC 2 cut(s) 33, 200
BmrFI CCNGG 1 cut(s) 262
BmsI GCATC 2 cut(s) 15, 70
BpmI CTGGAG 1 cut(s) 303
BsaI GGTCTC 1 cut(s) 557
BsaJI CCNNGG 1 cut(s) 261
Bsc4I CCNNNNNNNGG 2 cut(s) 208, 535
Bse1I ACTGG 2 cut(s) 98, 286
Bse3DI GCAATG 1 cut(s) 213
BseBI CCWGG 1 cut(s) 262
BseDI CCNNGG 1 cut(s) 261
BseGI GGATG 2 cut(s) 85, 424
BseLI CCNNNNNNNGG 2 cut(s) 208, 535
BseMI GCAATG 1 cut(s) 213
BseMII CTCAG 2 cut(s) 314, 591
BseNI ACTGG 2 cut(s) 98, 286
BseRI GAGGAG 2 cut(s) 35, 338
BseXI GCAGC 4 cut(s) 52, 377, 391, 394
BshFI GGCC 1 cut(s) 544
BshNI GGYRCC 1 cut(s) 31
BslFI GGGAC 1 cut(s) 88
BslI CCNNNNNNNGG 2 cut(s) 208, 535
BsmAI GTCTC 3 cut(s) 344, 557, 597
BsmFI GGGAC 1 cut(s) 88
BsnI GGCC 1 cut(s) 544
Bso31I GGTCTC 1 cut(s) 557
Bsp1286I GDGCHC 1 cut(s) 128
BspACI CCGC 1 cut(s) 234
BspANI GGCC 1 cut(s) 544
BspCNI CTCAG 2 cut(s) 313, 592
BspHI TCATGA 1 cut(s) 16
BspLI GGNNCC 2 cut(s) 33, 200
BspQI GCTCTTC 1 cut(s) 635
BspT107I GGYRCC 1 cut(s) 31
BspTNI GGTCTC 1 cut(s) 557
BsrBI CCGCTC 1 cut(s) 234
BsrDI GCAATG 1 cut(s) 213
BsrI ACTGG 2 cut(s) 98, 286
BssECI CCNNGG 1 cut(s) 261
Bst2UI CCWGG 1 cut(s) 262
Bst4CI ACNGT 1 cut(s) 370
Bst6I CTCTTC 4 cut(s) 21, 351, 494, 635
BstC8I GCNNGC 2 cut(s) 124, 227
BstDEI CTNAG 2 cut(s) 300, 600
BstEII GGTNACC 1 cut(s) 140
BstF5I GGATG 2 cut(s) 85, 424
BstHHI GCGC 2 cut(s) 225, 618
BstMAI GTCTC 3 cut(s) 344, 557, 597
BstMWI GCNNNNNNNGC 2 cut(s) 231, 387
BstNI CCWGG 1 cut(s) 262
BstNSI RCATGY 1 cut(s) 72
BstPI GGTNACC 1 cut(s) 140
BstSCI CCNGG 1 cut(s) 260
BstV1I GCAGC 4 cut(s) 52, 377, 391, 394
BsuRI GGCC 1 cut(s) 544
BtsCI GGATG 2 cut(s) 85, 424
BtsIMutI CAGTG 1 cut(s) 375
Cac8I GCNNGC 2 cut(s) 124, 227
CciI TCATGA 1 cut(s) 16
CfoI GCGC 2 cut(s) 225, 618
Csp6I GTAC 1 cut(s) 32
CviAII CATG 3 cut(s) 17, 69, 612
CviQI GTAC 1 cut(s) 32
DdeI CTNAG 2 cut(s) 300, 600
DrdI GACNNNNNNGTC 1 cut(s) 445
DseDI GACNNNNNNGTC 1 cut(s) 445
EaeI YGGCCR 1 cut(s) 542
Eam1104I CTCTTC 4 cut(s) 21, 351, 494, 635
EarI CTCTTC 4 cut(s) 21, 351, 494, 635
Eco24I GRGCYC 1 cut(s) 128
Eco31I GGTCTC 1 cut(s) 557
Eco57I CTGAAG 2 cut(s) 239, 375
Eco91I GGTNACC 1 cut(s) 140
EcoO65I GGTNACC 1 cut(s) 140
EcoRII CCWGG 1 cut(s) 260
EcoT38I GRGCYC 1 cut(s) 128
FaeI CATG 3 cut(s) 20, 72, 615
FaiI YATR 6 cut(s) 18, 70, 101, 296, 512, 613
FaqI GGGAC 1 cut(s) 88
FatI CATG 3 cut(s) 16, 68, 611
FblI GTMKAC 1 cut(s) 267
Fnu4HI GCNGC 4 cut(s) 66, 391, 405, 408
FokI GGATG 2 cut(s) 92, 431
FriOI GRGCYC 1 cut(s) 128
Fsp4HI GCNGC 4 cut(s) 66, 391, 405, 408
GlaI GCGC 2 cut(s) 224, 617
GluI GCNGC 4 cut(s) 66, 391, 405, 408
GsuI CTGGAG 1 cut(s) 303
HaeIII GGCC 1 cut(s) 544
HhaI GCGC 2 cut(s) 225, 618
Hin1II CATG 3 cut(s) 20, 72, 615
Hin6I GCGC 2 cut(s) 223, 616
HinP1I GCGC 2 cut(s) 223, 616
HinfI GANTC 1 cut(s) 602
Hpy166II GTNNAC 2 cut(s) 268, 609
Hpy188I TCNGA 5 cut(s) 75, 198, 303, 498, 601
Hpy188III TCNNGA 4 cut(s) 17, 105, 436, 450
Hpy8I GTNNAC 2 cut(s) 268, 609
Hpy99I CGWCG 1 cut(s) 111
HpyAV CCTTC 1 cut(s) 51
HpyCH4III ACNGT 1 cut(s) 370
HpyCH4V TGCA 6 cut(s) 54, 68, 191, 206, 313, 410
HpyF10VI GCNNNNNNNGC 2 cut(s) 231, 387
HpyF3I CTNAG 2 cut(s) 300, 600
Hsp92II CATG 3 cut(s) 20, 72, 615
HspAI GCGC 2 cut(s) 223, 616
KpnI GGTACC 1 cut(s) 35
LguI GCTCTTC 1 cut(s) 635
LmnI GCTCC 1 cut(s) 198
LpnPI CCDG 7 cut(s) 79, 141, 158, 247, 267, 274, 458
Lsp1109I GCAGC 4 cut(s) 52, 377, 391, 394
LweI GCATC 2 cut(s) 15, 70
MaeIII GTNAC 2 cut(s) 140, 628
MbiI CCGCTC 1 cut(s) 234
MboII GAAGA 6 cut(s) 38, 344, 350, 368, 511, 652
MhlI GDGCHC 1 cut(s) 128
MluCI AATT 5 cut(s) 56, 180, 192, 287, 513
MlyI GAGTC 1 cut(s) 611
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 9 cut(s) 13, 16, 22, 130, 316, 495, 529, 591, 661
MseI TTAA 1 cut(s) 365
MspA1I CMGCKG 1 cut(s) 523
MspR9I CCNGG 1 cut(s) 262
MvaI CCWGG 1 cut(s) 262
MwoI GCNNNNNNNGC 2 cut(s) 231, 387
NlaIII CATG 3 cut(s) 20, 72, 615
NlaIV GGNNCC 2 cut(s) 33, 200
NmeAIII GCCGAG 1 cut(s) 255
NspI RCATGY 1 cut(s) 72
PagI TCATGA 1 cut(s) 16
PciSI GCTCTTC 1 cut(s) 635
PkrI GCNGC 4 cut(s) 67, 392, 406, 409
PleI GAGTC 1 cut(s) 610
PpsI GAGTC 1 cut(s) 610
Psp6I CCWGG 1 cut(s) 260
PspEI GGTNACC 1 cut(s) 140
PspGI CCWGG 1 cut(s) 260
PspN4I GGNNCC 2 cut(s) 33, 200
PvuII CAGCTG 1 cut(s) 523
RsaI GTAC 1 cut(s) 33
RsaNI GTAC 1 cut(s) 32
SapI GCTCTTC 1 cut(s) 635
SaqAI TTAA 1 cut(s) 365
SatI GCNGC 4 cut(s) 66, 391, 405, 408
SchI GAGTC 1 cut(s) 611
ScrFI CCNGG 1 cut(s) 262
SduI GDGCHC 1 cut(s) 128
SetI ASST 9 cut(s) 33, 53, 219, 257, 346, 525, 583, 647, 671
SfaNI GCATC 2 cut(s) 15, 70
Sse9I AATT 5 cut(s) 56, 180, 192, 287, 513
SsiI CCGC 1 cut(s) 234
StyD4I CCNGG 1 cut(s) 260
TaaI ACNGT 1 cut(s) 370
TaqI TCGA 2 cut(s) 458, 638
TasI AATT 5 cut(s) 56, 180, 192, 287, 513
Tru1I TTAA 1 cut(s) 365
Tru9I TTAA 1 cut(s) 365
TscAI CASTG 1 cut(s) 375
TseI GCWGC 4 cut(s) 65, 390, 404, 407
TspDTI ATGAA 3 cut(s) 183, 283, 351
TspRI CASTG 1 cut(s) 375
XapI RAATTY 1 cut(s) 56
XceI RCATGY 1 cut(s) 72
XcmI CCANNNNNNNNNTGG 1 cut(s) 603
XmiI GTMKAC 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.