pycom15g08030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0012357
Physical Location & Seq
Forward (+)
4970168 .. 4970993
826 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g08030.2

Sequence Viewer

Length: 711 bp
ATGACACACACCAAAAGCACTAGTTTTGTAGGTATCTCAAAGCACCTCTGGCTTACAGCTTACAAACCCAAAGCACTTTTTTTTTTTCACTCCAACATGAGCATCTTTTATCACGAAGATGAACAATCACCAAATCCTTCCAAAAGATGCAAATTTCTTGCTGCTTGTCTCACCGATGCGTTTGCGAATTGCCATACCGGCAGAAAGCTTTCGGTTTCGAGCCGTGCGGAGGAGTGCTTGACAAGCGACTTTGATGAGGAACAGGAAGTTATTGTGTCTGCGATTCGAAGCCGTGCTATGGAAAAGCTGAGGCGCAAGCCGCGCAGCTTCTCAGATAGCTTTTCTTTCGTCTACTCTTCAAAATCGGGTGATTTATTCATAACACAGAAAGGAGTGGAAAAGCAGGAGGATCATGAAGACGATGAGAAAGCAGATTTTTTATCGGTTGCAAGCTGCCTTTCTTGCTGCTCAAGCGACGCTGCAAGTAGAGACGTGTTTCTTTCTGTCAAGACAAGCTTGTCGCGCTGTTCGAGCCTTAATGGGATCGAGTTTAGAGATTTTCCAAGGCAGTCCATAATTCAGCAGTTCCGTCATTGTGATGGCTGGCCGTTTGGGCTTTGCCGGAAGGCTGTGTTGCTTCCACCGCTGCCAAAGTCGCCCTCTGAGTCGTGGTTATGGAAAAAAGGCACTAAGTTTGTTAAGATGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

237

Amino Acids

26.81

Weight (kDa)

8.77

Isoelectric Point (pI)

65.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012357)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47410 AT1G47410
fragaria_vesca FvH4_2g34660 FvH4_2g34701
malus_domestica MD08G1103700.v1.1 MD15G1085000.v1.1
prunus_persica Prupe.1G438800_v2.0.a1
pyrus_communis pycom08g08510 pycom15g08030
rosa_chinensis RchiOBHm_Chr6g0307431
rosa_laevigata RLG00000009861 RLG00000010714
rosa_multiflora Rmu_sc0000031.1_g000017
rosa_roxburghii Rroxscaffold_7G00161000
rosa_rugosa Rorug06G0358600
rosa_samantha Rh6BG430500 Rh6CG484300 Rh6DG471000
rosa_wichuraiana Rw6G040900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 517
AccI GTMKAC 1 cut(s) 351
AccII CGCG 2 cut(s) 322, 523
AciI CCGC 3 cut(s) 227, 320, 644
AclWI GGATC 2 cut(s) 417, 551
AcoI YGGCCR 1 cut(s) 605
AcsI RAATTY 1 cut(s) 152
AfiI CCNNNNNNNGG 2 cut(s) 229, 298
AflIII ACRYGT 1 cut(s) 492
AgsI TTSAA 1 cut(s) 360
AhlI ACTAGT 1 cut(s) 20
AjiI CACGTC 1 cut(s) 493
AluBI AGCT 7 cut(s) 59, 208, 307, 327, 339, 453, 516
AluI AGCT 7 cut(s) 59, 208, 307, 327, 339, 453, 516
Alw26I GTCTC 2 cut(s) 173, 483
AlwI GGATC 2 cut(s) 417, 551
AoxI GGCC 1 cut(s) 605
ApeKI GCWGC 6 cut(s) 161, 324, 453, 465, 479, 646
ApoI RAATTY 1 cut(s) 152
Asp700I GAANNNNTTC 1 cut(s) 208
AspLEI GCGC 3 cut(s) 315, 324, 525
AsuHPI GGTGA 3 cut(s) 120, 163, 380
AsuII TTCGAA 1 cut(s) 286
BbsI GAAGAC 1 cut(s) 423
BbvCI CCTCAGC 1 cut(s) 308
BbvI GCAGC 6 cut(s) 148, 336, 440, 452, 466, 633
BccI CCATC 2 cut(s) 593, 697
BceAI ACGGC 3 cut(s) 207, 276, 592
BcgI CGANNNNNNTGC 2 cut(s) 164, 198
BcoDI GTCTC 2 cut(s) 173, 483
BcuI ACTAGT 1 cut(s) 20
BfaI CTAG 1 cut(s) 21
BglI GCCNNNNNGGC 2 cut(s) 198, 613
BisI GCNGC 7 cut(s) 162, 320, 325, 454, 466, 480, 647
BlsI GCNGC 7 cut(s) 163, 321, 326, 455, 467, 481, 648
BmgBI CACGTC 1 cut(s) 493
BmsI GCATC 3 cut(s) 111, 137, 166
BpiI GAAGAC 1 cut(s) 423
Bpu10I CCTNAGC 1 cut(s) 308
Bpu14I TTCGAA 1 cut(s) 286
BpuEI CTTGAG 1 cut(s) 454
BsaJI CCNNGG 1 cut(s) 563
Bsc4I CCNNNNNNNGG 2 cut(s) 229, 298
Bse118I RCCGGY 1 cut(s) 197
BseDI CCNNGG 1 cut(s) 563
BseLI CCNNNNNNNGG 2 cut(s) 229, 298
BseMII CTCAG 3 cut(s) 299, 345, 654
BseRI GAGGAG 1 cut(s) 245
BseXI GCAGC 6 cut(s) 148, 336, 440, 452, 466, 633
Bsh1236I CGCG 2 cut(s) 322, 523
BshFI GGCC 1 cut(s) 607
BsiSI CCGG 2 cut(s) 198, 622
BslI CCNNNNNNNGG 2 cut(s) 229, 298
BsmAI GTCTC 2 cut(s) 173, 483
BsmBI CGTCTC 1 cut(s) 483
BsnI GGCC 1 cut(s) 607
Bsp119I TTCGAA 1 cut(s) 286
Bsp143I GATC 2 cut(s) 409, 543
BspACI CCGC 3 cut(s) 227, 320, 644
BspANI GGCC 1 cut(s) 607
BspCNI CTCAG 3 cut(s) 300, 344, 655
BspFNI CGCG 2 cut(s) 322, 523
BspHI TCATGA 1 cut(s) 412
BspPI GGATC 2 cut(s) 417, 551
BspT104I TTCGAA 1 cut(s) 286
BsrFI RCCGGY 1 cut(s) 197
BssAI RCCGGY 1 cut(s) 197
BssECI CCNNGG 1 cut(s) 563
BssMI GATC 2 cut(s) 409, 543
BssT1I CCWWGG 1 cut(s) 563
Bst6I CTCTTC 1 cut(s) 361
BstBI TTCGAA 1 cut(s) 286
BstC8I GCNNGC 3 cut(s) 317, 451, 605
BstDEI CTNAG 4 cut(s) 308, 331, 663, 690
BstFNI CGCG 2 cut(s) 322, 523
BstHHI GCGC 3 cut(s) 315, 324, 525
BstKTI GATC 2 cut(s) 412, 546
BstMAI GTCTC 2 cut(s) 173, 483
BstMBI GATC 2 cut(s) 409, 543
BstUI CGCG 2 cut(s) 322, 523
BstV1I GCAGC 6 cut(s) 148, 336, 440, 452, 466, 633
BstV2I GAAGAC 1 cut(s) 423
BsuRI GGCC 1 cut(s) 607
BtrI CACGTC 1 cut(s) 493
Cac8I GCNNGC 3 cut(s) 317, 451, 605
CciI TCATGA 1 cut(s) 412
CfoI GCGC 3 cut(s) 315, 324, 525
Cfr10I RCCGGY 1 cut(s) 197
CseI GACGC 1 cut(s) 485
CviAII CATG 2 cut(s) 97, 413
DdeI CTNAG 4 cut(s) 308, 331, 663, 690
DpnI GATC 2 cut(s) 411, 545
DpnII GATC 2 cut(s) 409, 543
DrdI GACNNNNNNGTC 1 cut(s) 517
DseDI GACNNNNNNGTC 1 cut(s) 517
EaeI YGGCCR 1 cut(s) 605
Eam1104I CTCTTC 1 cut(s) 361
EarI CTCTTC 1 cut(s) 361
Eco130I CCWWGG 1 cut(s) 563
EcoT14I CCWWGG 1 cut(s) 563
ErhI CCWWGG 1 cut(s) 563
Esp3I CGTCTC 1 cut(s) 483
FaeI CATG 2 cut(s) 100, 416
FaiI YATR 7 cut(s) 98, 195, 299, 380, 414, 575, 676
FalI AAGNNNNNCTT 2 cut(s) 500, 532
FatI CATG 2 cut(s) 96, 412
FblI GTMKAC 1 cut(s) 351
Fnu4HI GCNGC 7 cut(s) 162, 320, 325, 454, 466, 480, 647
Fsp4HI GCNGC 7 cut(s) 162, 320, 325, 454, 466, 480, 647
FspBI CTAG 1 cut(s) 21
GlaI GCGC 3 cut(s) 314, 323, 524
GluI GCNGC 7 cut(s) 162, 320, 325, 454, 466, 480, 647
HaeIII GGCC 1 cut(s) 607
HapII CCGG 2 cut(s) 198, 622
HgaI GACGC 1 cut(s) 485
HhaI GCGC 3 cut(s) 315, 324, 525
Hin1II CATG 2 cut(s) 100, 416
Hin6I GCGC 3 cut(s) 313, 322, 523
HinP1I GCGC 3 cut(s) 313, 322, 523
HindIII AAGCTT 2 cut(s) 206, 514
HinfI GANTC 2 cut(s) 283, 665
HpaII CCGG 2 cut(s) 198, 622
HphI GGTGA 3 cut(s) 120, 163, 380
Hpy166II GTNNAC 1 cut(s) 352
Hpy188I TCNGA 2 cut(s) 334, 664
Hpy188III TCNNGA 3 cut(s) 113, 413, 508
Hpy8I GTNNAC 1 cut(s) 352
Hpy99I CGWCG 1 cut(s) 479
HpyAV CCTTC 2 cut(s) 147, 619
HpyCH4IV ACGT 1 cut(s) 492
HpyCH4V TGCA 3 cut(s) 150, 449, 482
HpyF3I CTNAG 4 cut(s) 308, 331, 663, 690
HpySE526I ACGT 1 cut(s) 492
Hsp92II CATG 2 cut(s) 100, 416
HspAI GCGC 3 cut(s) 313, 322, 523
Kzo9I GATC 2 cut(s) 409, 543
LpnPI CCDG 6 cut(s) 34, 211, 248, 389, 589, 635
Lsp1109I GCAGC 6 cut(s) 148, 336, 440, 452, 466, 633
LweI GCATC 3 cut(s) 111, 137, 166
MaeI CTAG 1 cut(s) 21
MaeII ACGT 1 cut(s) 492
MalI GATC 2 cut(s) 411, 545
MboI GATC 2 cut(s) 409, 543
MboII GAAGA 3 cut(s) 128, 348, 428
MluCI AATT 3 cut(s) 152, 187, 576
MlyI GAGTC 1 cut(s) 674
MmeI TCCRAC 1 cut(s) 117
MnlI CCTC 6 cut(s) 56, 223, 250, 303, 400, 670
MroXI GAANNNNTTC 1 cut(s) 208
MseI TTAA 3 cut(s) 537, 699, 709
MslI CAYNNNNRTG 2 cut(s) 117, 597
MspA1I CMGCKG 1 cut(s) 646
MspI CCGG 2 cut(s) 198, 622
MvnI CGCG 2 cut(s) 322, 523
NdeII GATC 2 cut(s) 409, 543
NlaIII CATG 2 cut(s) 100, 416
NspV TTCGAA 1 cut(s) 286
PagI TCATGA 1 cut(s) 412
PcsI WCGNNNNNNNCGW 1 cut(s) 527
PdmI GAANNNNTTC 1 cut(s) 208
PfeI GAWTC 1 cut(s) 283
PkrI GCNGC 7 cut(s) 163, 321, 326, 455, 467, 481, 648
PleI GAGTC 1 cut(s) 673
PpsI GAGTC 1 cut(s) 673
RseI CAYNNNNRTG 2 cut(s) 117, 597
SaqAI TTAA 3 cut(s) 537, 699, 709
SatI GCNGC 7 cut(s) 162, 320, 325, 454, 466, 480, 647
Sau3AI GATC 2 cut(s) 409, 543
SchI GAGTC 1 cut(s) 674
SfaNI GCATC 3 cut(s) 111, 137, 166
SfuI TTCGAA 1 cut(s) 286
SmiMI CAYNNNNRTG 2 cut(s) 117, 597
SmlI CTYRAG 1 cut(s) 469
SmoI CTYRAG 1 cut(s) 469
SpeI ACTAGT 1 cut(s) 20
Sse9I AATT 3 cut(s) 152, 187, 576
SsiI CCGC 3 cut(s) 227, 320, 644
SspMI CTAG 1 cut(s) 21
StyI CCWWGG 1 cut(s) 563
TaiI ACGT 1 cut(s) 495
TaqI TCGA 4 cut(s) 218, 286, 530, 546
TasI AATT 3 cut(s) 152, 187, 576
TauI GCSGC 1 cut(s) 322
TfiI GAWTC 1 cut(s) 283
Tru1I TTAA 3 cut(s) 537, 699, 709
Tru9I TTAA 3 cut(s) 537, 699, 709
TseI GCWGC 6 cut(s) 161, 324, 453, 465, 479, 646
TspDTI ATGAA 3 cut(s) 135, 367, 429
TspGWI ACGGA 1 cut(s) 578
XapI RAATTY 1 cut(s) 152
XmiI GTMKAC 1 cut(s) 351
XmnI GAANNNNTTC 1 cut(s) 208
XspI CTAG 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.