RLG00000010714

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0012357
Physical Location & Seq
Forward (+)
3815709 .. 3816466
758 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010714

Sequence Viewer

Length: 669 bp
ATGAGCATCTTTTATCATGAGGAGGAAGAGGTACCAAACCCTTCAAAAAGGTGCAAATTTCTTGCTACATGTCTGATGGATGCGTTTTCCAACTGCAATATGTCCCGACGGCTTCAAACTGCGAGCCCAGAAGCAGAGGATCACCCAGCAAGTGATGACTTTGATGATGAACAGGAACTAATTGTATCTGCAATTCGGAGCCGTGCAATGGAAAAGCTGAAGCGCAAGCCGAGCGGTTTGAGTTTGACAGATAGCTTCTCCTGGGTCTACTCTACCAAAACTGGAGAATTATTCATTACTCAGAATGGAGTGCCAAAAAAAGAGGAGTGTGGAGATGAAGAAGATGAGACTGAAGAGTTTTTATCAGTGGCAAGTTGCTTCTCTTGCTGCTCATCAAGTGCTGCTGCAAGTAAGGATGTGTTTCTCTCTGTCAAGACAAGCCTTTCAAGATGTTCGAGCCTTGATGGTTTTGAGTTCAACTTCAACGATTTTCAGAAGAGGCGATCCATAATTCAACAGCTGTGCCATTGTGAGGGTTGGCCGTTTGGTCTCTGCCGAAAGGCTGTGTTGCTTCCACCTCTGCCCAAGTCTCCATCTGAGTCGTGGACATGGCGCAAAGGGATTGTAACAAAATCGAAGAGCTTACCCCCCAAATCACACACAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

223

Amino Acids

24.95

Weight (kDa)

5.68

Isoelectric Point (pI)

67.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012357)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47410 AT1G47410
fragaria_vesca FvH4_2g34660 FvH4_2g34701
malus_domestica MD08G1103700.v1.1 MD15G1085000.v1.1
prunus_persica Prupe.1G438800_v2.0.a1
pyrus_communis pycom08g08510 pycom15g08030
rosa_chinensis RchiOBHm_Chr6g0307431
rosa_laevigata RLG00000009861 RLG00000010714
rosa_multiflora Rmu_sc0000031.1_g000017
rosa_roxburghii Rroxscaffold_7G00161000
rosa_rugosa Rorug06G0358600
rosa_samantha Rh6BG430500 Rh6CG484300 Rh6DG471000
rosa_wichuraiana Rw6G040900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 31
AccB1I GGYRCC 1 cut(s) 31
AccBSI CCGCTC 1 cut(s) 234
AccI GTMKAC 1 cut(s) 267
AciI CCGC 1 cut(s) 234
AclWI GGATC 2 cut(s) 147, 498
AcoI YGGCCR 1 cut(s) 539
AcsI RAATTY 1 cut(s) 56
AcuI CTGAAG 2 cut(s) 239, 372
AfaI GTAC 1 cut(s) 33
AfiI CCNNNNNNNGG 2 cut(s) 208, 532
AflIII ACRYGT 1 cut(s) 68
AgsI TTSAA 6 cut(s) 45, 116, 447, 478, 484, 515
AjnI CCWGG 1 cut(s) 260
AluBI AGCT 5 cut(s) 217, 255, 520, 642, 666
AluI AGCT 5 cut(s) 217, 255, 520, 642, 666
Alw26I GTCTC 3 cut(s) 341, 554, 594
AlwI GGATC 2 cut(s) 147, 498
AoxI GGCC 1 cut(s) 539
ApeKI GCWGC 3 cut(s) 387, 401, 404
ApoI RAATTY 1 cut(s) 56
Asp718I GGTACC 1 cut(s) 31
AspLEI GCGC 2 cut(s) 225, 615
AsuHPI GGTGA 1 cut(s) 134
BanI GGYRCC 1 cut(s) 31
BanII GRGCYC 1 cut(s) 128
BbvI GCAGC 3 cut(s) 374, 388, 391
BccI CCATC 3 cut(s) 70, 458, 601
BceAI ACGGC 3 cut(s) 125, 186, 526
BciT130I CCWGG 1 cut(s) 262
BcoDI GTCTC 3 cut(s) 341, 554, 594
BisI GCNGC 3 cut(s) 388, 402, 405
BlsI GCNGC 3 cut(s) 389, 403, 406
Bme1390I CCNGG 1 cut(s) 262
BmiI GGNNCC 2 cut(s) 33, 200
BmrFI CCNGG 1 cut(s) 262
BmsI GCATC 2 cut(s) 15, 70
BpmI CTGGAG 1 cut(s) 303
BsaI GGTCTC 1 cut(s) 554
BsaJI CCNNGG 1 cut(s) 261
Bsc4I CCNNNNNNNGG 2 cut(s) 208, 532
Bse1I ACTGG 1 cut(s) 286
Bse3DI GCAATG 1 cut(s) 213
BseBI CCWGG 1 cut(s) 262
BseDI CCNNGG 1 cut(s) 261
BseGI GGATG 2 cut(s) 85, 421
BseLI CCNNNNNNNGG 2 cut(s) 208, 532
BseMI GCAATG 1 cut(s) 213
BseMII CTCAG 2 cut(s) 314, 588
BseNI ACTGG 1 cut(s) 286
BseRI GAGGAG 2 cut(s) 35, 338
BseXI GCAGC 3 cut(s) 374, 388, 391
BseYI CCCAGC 1 cut(s) 145
BshFI GGCC 1 cut(s) 541
BshNI GGYRCC 1 cut(s) 31
BslFI GGGAC 1 cut(s) 88
BslI CCNNNNNNNGG 2 cut(s) 208, 532
BsmAI GTCTC 3 cut(s) 341, 554, 594
BsmFI GGGAC 1 cut(s) 88
BsnI GGCC 1 cut(s) 541
Bso31I GGTCTC 1 cut(s) 554
Bsp1286I GDGCHC 1 cut(s) 128
Bsp143I GATC 2 cut(s) 139, 503
BspACI CCGC 1 cut(s) 234
BspANI GGCC 1 cut(s) 541
BspCNI CTCAG 2 cut(s) 313, 589
BspHI TCATGA 1 cut(s) 16
BspLI GGNNCC 2 cut(s) 33, 200
BspPI GGATC 2 cut(s) 147, 498
BspQI GCTCTTC 1 cut(s) 632
BspT107I GGYRCC 1 cut(s) 31
BspTNI GGTCTC 1 cut(s) 554
BsrBI CCGCTC 1 cut(s) 234
BsrDI GCAATG 1 cut(s) 213
BsrI ACTGG 1 cut(s) 286
BssECI CCNNGG 1 cut(s) 261
BssMI GATC 2 cut(s) 139, 503
Bst2UI CCWGG 1 cut(s) 262
Bst6I CTCTTC 4 cut(s) 21, 348, 491, 632
BstC8I GCNNGC 2 cut(s) 124, 227
BstDEI CTNAG 2 cut(s) 300, 597
BstF5I GGATG 2 cut(s) 85, 421
BstHHI GCGC 2 cut(s) 225, 615
BstKTI GATC 2 cut(s) 142, 506
BstMAI GTCTC 3 cut(s) 341, 554, 594
BstMBI GATC 2 cut(s) 139, 503
BstMWI GCNNNNNNNGC 2 cut(s) 231, 384
BstNI CCWGG 1 cut(s) 262
BstNSI RCATGY 1 cut(s) 72
BstSCI CCNGG 1 cut(s) 260
BstV1I GCAGC 3 cut(s) 374, 388, 391
BsuRI GGCC 1 cut(s) 541
BtsCI GGATG 2 cut(s) 85, 421
BtsIMutI CAGTG 1 cut(s) 372
Cac8I GCNNGC 2 cut(s) 124, 227
CciI TCATGA 1 cut(s) 16
CfoI GCGC 2 cut(s) 225, 615
Csp6I GTAC 1 cut(s) 32
CviAII CATG 3 cut(s) 17, 69, 609
CviQI GTAC 1 cut(s) 32
DdeI CTNAG 2 cut(s) 300, 597
DpnI GATC 2 cut(s) 141, 505
DpnII GATC 2 cut(s) 139, 503
EaeI YGGCCR 1 cut(s) 539
Eam1104I CTCTTC 4 cut(s) 21, 348, 491, 632
EarI CTCTTC 4 cut(s) 21, 348, 491, 632
Eco24I GRGCYC 1 cut(s) 128
Eco31I GGTCTC 1 cut(s) 554
Eco57I CTGAAG 2 cut(s) 239, 372
EcoRII CCWGG 1 cut(s) 260
EcoT38I GRGCYC 1 cut(s) 128
FaeI CATG 3 cut(s) 20, 72, 612
FaiI YATR 5 cut(s) 18, 70, 101, 509, 610
FaqI GGGAC 1 cut(s) 88
FatI CATG 3 cut(s) 16, 68, 608
FblI GTMKAC 1 cut(s) 267
Fnu4HI GCNGC 3 cut(s) 388, 402, 405
FokI GGATG 2 cut(s) 92, 428
FriOI GRGCYC 1 cut(s) 128
Fsp4HI GCNGC 3 cut(s) 388, 402, 405
GlaI GCGC 2 cut(s) 224, 614
GluI GCNGC 3 cut(s) 388, 402, 405
GsaI CCCAGC 1 cut(s) 149
GsuI CTGGAG 1 cut(s) 303
HaeIII GGCC 1 cut(s) 541
HhaI GCGC 2 cut(s) 225, 615
Hin1II CATG 3 cut(s) 20, 72, 612
Hin6I GCGC 2 cut(s) 223, 613
HinP1I GCGC 2 cut(s) 223, 613
HinfI GANTC 1 cut(s) 599
HphI GGTGA 1 cut(s) 134
Hpy166II GTNNAC 2 cut(s) 268, 606
Hpy188I TCNGA 5 cut(s) 75, 198, 303, 495, 598
Hpy188III TCNNGA 4 cut(s) 17, 105, 433, 447
Hpy8I GTNNAC 2 cut(s) 268, 606
Hpy99I CGWCG 1 cut(s) 111
HpyAV CCTTC 1 cut(s) 51
HpyCH4V TGCA 5 cut(s) 54, 96, 191, 206, 407
HpyF10VI GCNNNNNNNGC 2 cut(s) 231, 384
HpyF3I CTNAG 2 cut(s) 300, 597
Hsp92II CATG 3 cut(s) 20, 72, 612
HspAI GCGC 2 cut(s) 223, 613
KpnI GGTACC 1 cut(s) 35
Kzo9I GATC 2 cut(s) 139, 503
LguI GCTCTTC 1 cut(s) 632
LmnI GCTCC 1 cut(s) 198
LpnPI CCDG 6 cut(s) 141, 158, 159, 247, 267, 274
Lsp1109I GCAGC 3 cut(s) 374, 388, 391
LweI GCATC 2 cut(s) 15, 70
MaeIII GTNAC 1 cut(s) 625
MalI GATC 2 cut(s) 141, 505
MbiI CCGCTC 1 cut(s) 234
MboI GATC 2 cut(s) 139, 503
MboII GAAGA 6 cut(s) 38, 350, 353, 365, 508, 649
MhlI GDGCHC 1 cut(s) 128
MluCI AATT 5 cut(s) 56, 180, 192, 287, 510
MlyI GAGTC 1 cut(s) 608
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 8 cut(s) 13, 16, 22, 130, 316, 492, 526, 588
MspA1I CMGCKG 1 cut(s) 520
MspR9I CCNGG 1 cut(s) 262
MvaI CCWGG 1 cut(s) 262
MwoI GCNNNNNNNGC 2 cut(s) 231, 384
NdeII GATC 2 cut(s) 139, 503
NlaIII CATG 3 cut(s) 20, 72, 612
NlaIV GGNNCC 2 cut(s) 33, 200
NmeAIII GCCGAG 1 cut(s) 255
NspI RCATGY 1 cut(s) 72
PagI TCATGA 1 cut(s) 16
PciI ACATGT 1 cut(s) 68
PciSI GCTCTTC 1 cut(s) 632
PkrI GCNGC 3 cut(s) 389, 403, 406
PleI GAGTC 1 cut(s) 607
PpsI GAGTC 1 cut(s) 607
PscI ACATGT 1 cut(s) 68
Psp6I CCWGG 1 cut(s) 260
PspFI CCCAGC 1 cut(s) 145
PspGI CCWGG 1 cut(s) 260
PspN4I GGNNCC 2 cut(s) 33, 200
PvuII CAGCTG 1 cut(s) 520
RsaI GTAC 1 cut(s) 33
RsaNI GTAC 1 cut(s) 32
SapI GCTCTTC 1 cut(s) 632
SatI GCNGC 3 cut(s) 388, 402, 405
Sau3AI GATC 2 cut(s) 139, 503
SchI GAGTC 1 cut(s) 608
ScrFI CCNGG 1 cut(s) 262
SduI GDGCHC 1 cut(s) 128
SetI ASST 8 cut(s) 33, 53, 219, 257, 522, 580, 644, 668
SfaNI GCATC 2 cut(s) 15, 70
Sse9I AATT 5 cut(s) 56, 180, 192, 287, 510
SsiI CCGC 1 cut(s) 234
StyD4I CCNGG 1 cut(s) 260
TaqI TCGA 2 cut(s) 455, 635
TasI AATT 5 cut(s) 56, 180, 192, 287, 510
TscAI CASTG 1 cut(s) 372
TseI GCWGC 3 cut(s) 387, 401, 404
TspDTI ATGAA 3 cut(s) 183, 283, 351
TspRI CASTG 1 cut(s) 372
XapI RAATTY 1 cut(s) 56
XceI RCATGY 1 cut(s) 72
XcmI CCANNNNNNNNNTGG 1 cut(s) 600
XmiI GTMKAC 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.