Prupe.1G438800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012357
Physical Location & Seq
Forward (+)
37314920 .. 37315673
754 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G438800.1

Sequence Viewer

Length: 624 bp
ATGAGCATCTTTTATCATGAAGAAGAGCCACCAAATCCTTCCAAAAGGTGCAAATTTCTTGCTGCTTGTCTCACAGATGCGTTTTCCAATTGCCATATTGGCAGACGGCTTCCAACTTCGAGCCCAGAAGCAGAGGATCAATACATAACAAATGACTTTGATGAGGAACAGGAAGTAATTGTATCAGCAATTCGAAGTGCTGCAATGGAAAAGTTGAGGCGCAAGCCTAGCAGTTTGACAGATAGTTTTTCATTTGTCTACTCTTCAAAATCAGGAGATTTATTCATAAGCCAGAAAGGAGTACTAAACAAAAAGGATCAAGGTGAAGAAGATGATGAGAAAGAAGAATTTTTATCTGTTAAAAGTTGCTTCTCTTGCTGCTCAACTGCTGCCACAAGTAGAGATGTGTTTCTTTCTGTCAAGACAAGTTTGTCCCGCTGTTCGAGCCTTAATGGGATTGATTTTAAAGATTTTCCGAGGCAGTCTATAATTCAGCAATTCCGTCATTGTGAGGGCTGGCCCTTTGGTCTTTGCCGGAAGGCTGTGTTGCTTCCACCTCTGCCCAAGTCGCCGTCTGAGTCGTGGTCATGGCGCAAAGGCACTAAATATGTCAAGATGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

208

Amino Acids

23.45

Weight (kDa)

7.5

Isoelectric Point (pI)

70.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012357)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47410 AT1G47410
fragaria_vesca FvH4_2g34660 FvH4_2g34701
malus_domestica MD08G1103700.v1.1 MD15G1085000.v1.1
prunus_persica Prupe.1G438800_v2.0.a1
pyrus_communis pycom08g08510 pycom15g08030
rosa_chinensis RchiOBHm_Chr6g0307431
rosa_laevigata RLG00000009861 RLG00000010714
rosa_multiflora Rmu_sc0000031.1_g000017
rosa_roxburghii Rroxscaffold_7G00161000
rosa_rugosa Rorug06G0358600
rosa_samantha Rh6BG430500 Rh6CG484300 Rh6DG471000
rosa_wichuraiana Rw6G040900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 430
AccI GTMKAC 1 cut(s) 258
AciI CCGC 1 cut(s) 436
AclWI GGATC 2 cut(s) 144, 324
AcsI RAATTY 2 cut(s) 53, 347
AfaI GTAC 1 cut(s) 303
AgsI TTSAA 1 cut(s) 267
Alw26I GTCTC 1 cut(s) 74
AlwI GGATC 2 cut(s) 144, 324
AoxI GGCC 1 cut(s) 518
ApeKI GCWGC 4 cut(s) 62, 200, 378, 389
ApoI RAATTY 2 cut(s) 53, 347
AspLEI GCGC 2 cut(s) 222, 594
AspS9I GGNCC 1 cut(s) 519
AsuHPI GGTGA 1 cut(s) 335
AsuII TTCGAA 1 cut(s) 193
BanII GRGCYC 1 cut(s) 125
BbvI GCAGC 4 cut(s) 49, 187, 365, 376
BccI CCATC 1 cut(s) 610
BceAI ACGGC 2 cut(s) 122, 556
BcoDI GTCTC 1 cut(s) 74
BfaI CTAG 1 cut(s) 228
BglI GCCNNNNNGGC 1 cut(s) 99
BisI GCNGC 4 cut(s) 63, 201, 379, 390
BlsI GCNGC 4 cut(s) 64, 202, 380, 391
BmcAI AGTACT 1 cut(s) 303
BmgT120I GGNCC 1 cut(s) 519
BmsI GCATC 2 cut(s) 15, 67
Bpu14I TTCGAA 1 cut(s) 193
BsaJI CCNNGG 1 cut(s) 476
Bse3DI GCAATG 1 cut(s) 210
BseDI CCNNGG 1 cut(s) 476
BseMI GCAATG 1 cut(s) 210
BseMII CTCAG 1 cut(s) 567
BseXI GCAGC 4 cut(s) 49, 187, 365, 376
BshFI GGCC 1 cut(s) 520
BsiSI CCGG 1 cut(s) 535
BslFI GGGAC 1 cut(s) 418
BsmAI GTCTC 1 cut(s) 74
BsmFI GGGAC 1 cut(s) 418
BsnI GGCC 1 cut(s) 520
Bsp119I TTCGAA 1 cut(s) 193
Bsp1286I GDGCHC 1 cut(s) 125
Bsp143I GATC 2 cut(s) 136, 316
BspACI CCGC 1 cut(s) 436
BspANI GGCC 1 cut(s) 520
BspCNI CTCAG 1 cut(s) 568
BspHI TCATGA 1 cut(s) 16
BspPI GGATC 2 cut(s) 144, 324
BspQI GCTCTTC 1 cut(s) 18
BspT104I TTCGAA 1 cut(s) 193
BsrDI GCAATG 1 cut(s) 210
BssECI CCNNGG 1 cut(s) 476
BssMI GATC 2 cut(s) 136, 316
Bst6I CTCTTC 2 cut(s) 18, 268
BstBI TTCGAA 1 cut(s) 193
BstC8I GCNNGC 2 cut(s) 224, 518
BstDEI CTNAG 1 cut(s) 576
BstHHI GCGC 2 cut(s) 222, 594
BstKTI GATC 2 cut(s) 139, 319
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 2 cut(s) 136, 316
BstMWI GCNNNNNNNGC 5 cut(s) 99, 228, 375, 444, 568
BstV1I GCAGC 4 cut(s) 49, 187, 365, 376
BsuRI GGCC 1 cut(s) 520
Cac8I GCNNGC 2 cut(s) 224, 518
CciI TCATGA 1 cut(s) 16
CfoI GCGC 2 cut(s) 222, 594
Cfr13I GGNCC 1 cut(s) 519
Csp6I GTAC 1 cut(s) 302
CviAII CATG 2 cut(s) 17, 588
CviJI RGCY 9 cut(s) 28, 109, 123, 226, 291, 447, 516, 520, 542
CviKI_1 RGCY 9 cut(s) 28, 109, 123, 226, 291, 447, 516, 520, 542
CviQI GTAC 1 cut(s) 302
DdeI CTNAG 1 cut(s) 576
DpnI GATC 2 cut(s) 138, 318
DpnII GATC 2 cut(s) 136, 316
DraI TTTAAA 1 cut(s) 466
DrdI GACNNNNNNGTC 1 cut(s) 430
DseDI GACNNNNNNGTC 1 cut(s) 430
Eam1104I CTCTTC 2 cut(s) 18, 268
EarI CTCTTC 2 cut(s) 18, 268
Eco24I GRGCYC 1 cut(s) 125
EcoT38I GRGCYC 1 cut(s) 125
FaeI CATG 2 cut(s) 20, 591
FaiI YATR 7 cut(s) 18, 96, 146, 287, 488, 589, 609
FaqI GGGAC 1 cut(s) 418
FatI CATG 2 cut(s) 16, 587
FauI CCCGC 1 cut(s) 443
FblI GTMKAC 1 cut(s) 258
Fnu4HI GCNGC 4 cut(s) 63, 201, 379, 390
FriOI GRGCYC 1 cut(s) 125
Fsp4HI GCNGC 4 cut(s) 63, 201, 379, 390
FspBI CTAG 1 cut(s) 228
GlaI GCGC 2 cut(s) 221, 593
GluI GCNGC 4 cut(s) 63, 201, 379, 390
HaeIII GGCC 1 cut(s) 520
HapII CCGG 1 cut(s) 535
HhaI GCGC 2 cut(s) 222, 594
Hin1II CATG 2 cut(s) 20, 591
Hin6I GCGC 2 cut(s) 220, 592
HinP1I GCGC 2 cut(s) 220, 592
HinfI GANTC 1 cut(s) 578
HpaII CCGG 1 cut(s) 535
HphI GGTGA 1 cut(s) 335
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 2 cut(s) 477, 577
Hpy188III TCNNGA 4 cut(s) 17, 273, 421, 613
Hpy8I GTNNAC 1 cut(s) 259
HpyAV CCTTC 2 cut(s) 48, 532
HpyCH4V TGCA 2 cut(s) 51, 203
HpyF10VI GCNNNNNNNGC 5 cut(s) 99, 228, 375, 444, 568
HpyF3I CTNAG 1 cut(s) 576
Hsp92II CATG 2 cut(s) 20, 591
HspAI GCGC 2 cut(s) 220, 592
Kzo9I GATC 2 cut(s) 136, 316
LguI GCTCTTC 1 cut(s) 18
LpnPI CCDG 6 cut(s) 138, 155, 258, 305, 502, 548
Lsp1109I GCAGC 4 cut(s) 49, 187, 365, 376
LweI GCATC 2 cut(s) 15, 67
MaeI CTAG 1 cut(s) 228
MalI GATC 2 cut(s) 138, 318
MboI GATC 2 cut(s) 136, 316
MboII GAAGA 6 cut(s) 32, 35, 255, 338, 341, 356
MfeI CAATTG 1 cut(s) 88
MhlI GDGCHC 1 cut(s) 125
MluCI AATT 7 cut(s) 53, 88, 177, 189, 347, 489, 497
MlyI GAGTC 1 cut(s) 587
MmeI TCCRAC 1 cut(s) 137
MnlI CCTC 6 cut(s) 127, 157, 210, 471, 505, 567
MseI TTAA 4 cut(s) 360, 450, 465, 622
MspA1I CMGCKG 1 cut(s) 438
MspI CCGG 1 cut(s) 535
MunI CAATTG 1 cut(s) 88
MwoI GCNNNNNNNGC 5 cut(s) 99, 228, 375, 444, 568
NdeII GATC 2 cut(s) 136, 316
NlaIII CATG 2 cut(s) 20, 591
NspV TTCGAA 1 cut(s) 193
PagI TCATGA 1 cut(s) 16
PciSI GCTCTTC 1 cut(s) 18
PkrI GCNGC 4 cut(s) 64, 202, 380, 391
PleI GAGTC 1 cut(s) 586
PpsI GAGTC 1 cut(s) 586
PspPI GGNCC 1 cut(s) 519
RsaI GTAC 1 cut(s) 303
RsaNI GTAC 1 cut(s) 302
SapI GCTCTTC 1 cut(s) 18
SaqAI TTAA 4 cut(s) 360, 450, 465, 622
SatI GCNGC 4 cut(s) 63, 201, 379, 390
Sau3AI GATC 2 cut(s) 136, 316
Sau96I GGNCC 1 cut(s) 519
ScaI AGTACT 1 cut(s) 303
SchI GAGTC 1 cut(s) 587
SduI GDGCHC 1 cut(s) 125
SetI ASST 3 cut(s) 50, 325, 559
SfaNI GCATC 2 cut(s) 15, 67
SfuI TTCGAA 1 cut(s) 193
Sse9I AATT 7 cut(s) 53, 88, 177, 189, 347, 489, 497
SsiI CCGC 1 cut(s) 436
SspMI CTAG 1 cut(s) 228
TaqI TCGA 3 cut(s) 119, 193, 443
TasI AATT 7 cut(s) 53, 88, 177, 189, 347, 489, 497
TatI WGTACW 1 cut(s) 301
Tru1I TTAA 4 cut(s) 360, 450, 465, 622
Tru9I TTAA 4 cut(s) 360, 450, 465, 622
TseI GCWGC 4 cut(s) 62, 200, 378, 389
TspDTI ATGAA 3 cut(s) 33, 240, 274
TspGWI ACGGA 1 cut(s) 491
XapI RAATTY 2 cut(s) 53, 347
XmiI GTMKAC 1 cut(s) 258
XspI CTAG 1 cut(s) 228
ZrmI AGTACT 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.