FvH4_2g34660

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0012357
Physical Location & Seq
Forward (+)
25676593 .. 25677723
1131 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g34660.t1

Sequence Viewer

Length: 696 bp
ATGAGCATCGTTTATCATGAAGAGGAGGAGGAGGAGGTGCCCAACCCTTCAAAAAGATCCAAGTTTCTTGCTGCATGTCTCATGGATGCGTTTTCCAACTGCCATATGCCTCGGCTTCGAACTTCAAGCCCAGAAGCAGAGGATCACCCGGCAAGTGATGACTTTGAAGATGAACAGGAACTGATTGTATCTGCAATCCGGAGCCGTGCAATGGAAAAGCTGAAGCGCAAGCCGAGCAGTTTGAGTTTGACAGATAGCTTTTCTTGGGTTTACTCTACGAAAACTGGAGAGTTATACATAACTCAAAAAGCAGCGGAGAAGAAAGAGGAGTGTGAAGATGAAGAAGATGATGAAAAGGAAGAGTTCTTATCAGTGGCCAGTTGCTTCTCTTGCTGCTCAGCTAGTGCTGCTGCAAGTAGGGATGTGTTTCTCTCTGTCAAGACTAGTCTTTCAAGATGTTCGAGCCTTGATGGTTTTGAGTTCAACTTCAACGACTTTCAGAAGAGGCAGTCCATAATTCAACAGCTGTGCCATTGTGAGGGCTGGCCGTTTGGCCTTTGCCGGAAGGCTGTGTTGCTTCCGCCTCTGCCCAAGTCTCCGTCGGAGTCGTGGACATGGCGCAAAGGGACTGTAACAAAATCGAAGAGCTTACCCTCCAGATCACATACAATGACACCAAATATAGTGCCTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

232

Amino Acids

26.1

Weight (kDa)

5.29

Isoelectric Point (pI)

71.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012357)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47410 AT1G47410
fragaria_vesca FvH4_2g34660 FvH4_2g34701
malus_domestica MD08G1103700.v1.1 MD15G1085000.v1.1
prunus_persica Prupe.1G438800_v2.0.a1
pyrus_communis pycom08g08510 pycom15g08030
rosa_chinensis RchiOBHm_Chr6g0307431
rosa_laevigata RLG00000009861 RLG00000010714
rosa_multiflora Rmu_sc0000031.1_g000017
rosa_roxburghii Rroxscaffold_7G00161000
rosa_rugosa Rorug06G0358600
rosa_samantha Rh6BG430500 Rh6CG484300 Rh6DG471000
rosa_wichuraiana Rw6G040900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 37
AccIII TCCGGA 1 cut(s) 198
AciI CCGC 2 cut(s) 314, 581
AclWI GGATC 2 cut(s) 51, 150
AcoI YGGCCR 2 cut(s) 375, 545
AcuI CTGAAG 1 cut(s) 242
AfiI CCNNNNNNNGG 2 cut(s) 211, 538
AgsI TTSAA 7 cut(s) 51, 126, 167, 453, 484, 490, 521
AhlI ACTAGT 1 cut(s) 443
AluBI AGCT 5 cut(s) 220, 258, 401, 526, 648
AluI AGCT 5 cut(s) 220, 258, 401, 526, 648
Alw26I GTCTC 2 cut(s) 83, 600
AlwI GGATC 2 cut(s) 51, 150
AlwNI CAGNNNCTG 1 cut(s) 181
Aor13HI TCCGGA 1 cut(s) 198
AoxI GGCC 3 cut(s) 375, 545, 553
ApeKI GCWGC 5 cut(s) 71, 311, 393, 407, 410
AspLEI GCGC 2 cut(s) 228, 621
AsuC2I CCSGG 1 cut(s) 149
AsuHPI GGTGA 1 cut(s) 137
AsuII TTCGAA 1 cut(s) 118
BaeGI GKGCMC 1 cut(s) 42
BalI TGGCCA 1 cut(s) 377
BanI GGYRCC 1 cut(s) 37
BbvI GCAGC 5 cut(s) 58, 323, 380, 394, 397
BccI CCATC 1 cut(s) 464
BceAI ACGGC 2 cut(s) 189, 532
BcnI CCSGG 1 cut(s) 149
BcoDI GTCTC 2 cut(s) 83, 600
BcuI ACTAGT 1 cut(s) 443
BfaI CTAG 2 cut(s) 402, 444
BisI GCNGC 5 cut(s) 72, 312, 394, 408, 411
BlpI GCTNAGC 1 cut(s) 397
BlsI GCNGC 5 cut(s) 73, 313, 395, 409, 412
Bme1390I CCNGG 1 cut(s) 149
BmiI GGNNCC 2 cut(s) 39, 203
BmrFI CCNGG 1 cut(s) 149
BmsI GCATC 2 cut(s) 15, 76
BpmI CTGGAG 2 cut(s) 306, 640
Bpu1102I GCTNAGC 1 cut(s) 397
Bpu14I TTCGAA 1 cut(s) 118
BpuMI CCSGG 1 cut(s) 149
BsaJI CCNNGG 1 cut(s) 110
BsaWI WCCGGW 1 cut(s) 198
Bsc4I CCNNNNNNNGG 2 cut(s) 211, 538
Bse1I ACTGG 2 cut(s) 289, 378
Bse3DI GCAATG 1 cut(s) 216
BseAI TCCGGA 1 cut(s) 198
BseDI CCNNGG 1 cut(s) 110
BseGI GGATG 2 cut(s) 91, 427
BseLI CCNNNNNNNGG 2 cut(s) 211, 538
BseMI GCAATG 1 cut(s) 216
BseMII CTCAG 1 cut(s) 411
BseNI ACTGG 2 cut(s) 289, 378
BseRI GAGGAG 5 cut(s) 38, 41, 44, 47, 341
BseSI GKGCMC 1 cut(s) 42
BseXI GCAGC 5 cut(s) 58, 323, 380, 394, 397
BshFI GGCC 3 cut(s) 377, 547, 555
BshNI GGYRCC 1 cut(s) 37
BsiSI CCGG 3 cut(s) 149, 199, 562
BslFI GGGAC 1 cut(s) 640
BslI CCNNNNNNNGG 2 cut(s) 211, 538
BsmAI GTCTC 2 cut(s) 83, 600
BsmFI GGGAC 1 cut(s) 640
BsnI GGCC 3 cut(s) 377, 547, 555
Bsp119I TTCGAA 1 cut(s) 118
Bsp1286I GDGCHC 1 cut(s) 42
Bsp13I TCCGGA 1 cut(s) 198
Bsp143I GATC 3 cut(s) 56, 142, 659
Bsp1720I GCTNAGC 1 cut(s) 397
BspACI CCGC 2 cut(s) 314, 581
BspANI GGCC 3 cut(s) 377, 547, 555
BspCNI CTCAG 1 cut(s) 410
BspEI TCCGGA 1 cut(s) 198
BspHI TCATGA 1 cut(s) 16
BspLI GGNNCC 2 cut(s) 39, 203
BspPI GGATC 2 cut(s) 51, 150
BspQI GCTCTTC 1 cut(s) 638
BspT104I TTCGAA 1 cut(s) 118
BspT107I GGYRCC 1 cut(s) 37
BsrDI GCAATG 1 cut(s) 216
BsrI ACTGG 2 cut(s) 289, 378
BssECI CCNNGG 1 cut(s) 110
BssMI GATC 3 cut(s) 56, 142, 659
Bst4CI ACNGT 1 cut(s) 631
Bst6I CTCTTC 4 cut(s) 15, 354, 497, 638
BstBI TTCGAA 1 cut(s) 118
BstC8I GCNNGC 2 cut(s) 230, 545
BstDEI CTNAG 1 cut(s) 397
BstF5I GGATG 2 cut(s) 91, 427
BstHHI GCGC 2 cut(s) 228, 621
BstKTI GATC 3 cut(s) 59, 145, 662
BstMAI GTCTC 2 cut(s) 83, 600
BstMBI GATC 3 cut(s) 56, 142, 659
BstMWI GCNNNNNNNGC 3 cut(s) 234, 390, 407
BstNSI RCATGY 1 cut(s) 78
BstSCI CCNGG 1 cut(s) 147
BstSLI GKGCMC 1 cut(s) 42
BstV1I GCAGC 5 cut(s) 58, 323, 380, 394, 397
BstX2I RGATCY 1 cut(s) 56
BstYI RGATCY 1 cut(s) 56
BsuRI GGCC 3 cut(s) 377, 547, 555
BtsCI GGATG 2 cut(s) 91, 427
BtsIMutI CAGTG 1 cut(s) 378
Cac8I GCNNGC 2 cut(s) 230, 545
CaiI CAGNNNCTG 1 cut(s) 181
CciI TCATGA 1 cut(s) 16
CfoI GCGC 2 cut(s) 228, 621
CviAII CATG 4 cut(s) 17, 75, 82, 615
DdeI CTNAG 1 cut(s) 397
DpnI GATC 3 cut(s) 58, 144, 661
DpnII GATC 3 cut(s) 56, 142, 659
EaeI YGGCCR 2 cut(s) 375, 545
Eam1104I CTCTTC 4 cut(s) 15, 354, 497, 638
EarI CTCTTC 4 cut(s) 15, 354, 497, 638
EciI GGCGGA 1 cut(s) 570
Eco57I CTGAAG 1 cut(s) 242
FaeI CATG 4 cut(s) 20, 78, 85, 618
FaqI GGGAC 1 cut(s) 640
FatI CATG 4 cut(s) 16, 74, 81, 614
FauNDI CATATG 1 cut(s) 105
Fnu4HI GCNGC 5 cut(s) 72, 312, 394, 408, 411
FokI GGATG 2 cut(s) 98, 434
Fsp4HI GCNGC 5 cut(s) 72, 312, 394, 408, 411
FspBI CTAG 2 cut(s) 402, 444
GlaI GCGC 2 cut(s) 227, 620
GluI GCNGC 5 cut(s) 72, 312, 394, 408, 411
GsuI CTGGAG 2 cut(s) 306, 640
HaeIII GGCC 3 cut(s) 377, 547, 555
HapII CCGG 3 cut(s) 149, 199, 562
HhaI GCGC 2 cut(s) 228, 621
Hin1II CATG 4 cut(s) 20, 78, 85, 618
Hin6I GCGC 2 cut(s) 226, 619
HinP1I GCGC 2 cut(s) 226, 619
HinfI GANTC 1 cut(s) 605
HpaII CCGG 3 cut(s) 149, 199, 562
HphI GGTGA 1 cut(s) 137
Hpy166II GTNNAC 2 cut(s) 271, 612
Hpy188I TCNGA 2 cut(s) 501, 604
Hpy188III TCNNGA 5 cut(s) 17, 199, 439, 453, 657
Hpy8I GTNNAC 2 cut(s) 271, 612
Hpy99I CGWCG 1 cut(s) 604
HpyAV CCTTC 2 cut(s) 57, 559
HpyCH4III ACNGT 1 cut(s) 631
HpyCH4V TGCA 4 cut(s) 74, 194, 209, 413
HpyF10VI GCNNNNNNNGC 3 cut(s) 234, 390, 407
HpyF3I CTNAG 1 cut(s) 397
Hsp92II CATG 4 cut(s) 20, 78, 85, 618
HspAI GCGC 2 cut(s) 226, 619
Kpn2I TCCGGA 1 cut(s) 198
Kzo9I GATC 3 cut(s) 56, 142, 659
LguI GCTCTTC 1 cut(s) 638
LmnI GCTCC 1 cut(s) 201
LpnPI CCDG 9 cut(s) 144, 161, 162, 212, 270, 391, 529, 575, 670
Lsp1109I GCAGC 5 cut(s) 58, 323, 380, 394, 397
LweI GCATC 2 cut(s) 15, 76
MaeI CTAG 2 cut(s) 402, 444
MaeIII GTNAC 1 cut(s) 631
MalI GATC 3 cut(s) 58, 144, 661
MboI GATC 3 cut(s) 56, 142, 659
MboII GAAGA 9 cut(s) 32, 179, 331, 347, 353, 356, 371, 514, 655
MflI RGATCY 1 cut(s) 56
MhlI GDGCHC 1 cut(s) 42
MlsI TGGCCA 1 cut(s) 377
MluCI AATT 1 cut(s) 516
MluNI TGGCCA 1 cut(s) 377
MlyI GAGTC 1 cut(s) 614
MmeI TCCRAC 2 cut(s) 120, 582
Mox20I TGGCCA 1 cut(s) 377
MroI TCCGGA 1 cut(s) 198
MscI TGGCCA 1 cut(s) 377
Msp20I TGGCCA 1 cut(s) 377
MspA1I CMGCKG 2 cut(s) 314, 526
MspI CCGG 3 cut(s) 149, 199, 562
MspR9I CCNGG 1 cut(s) 149
MwoI GCNNNNNNNGC 3 cut(s) 234, 390, 407
NciI CCSGG 1 cut(s) 149
NdeI CATATG 1 cut(s) 105
NdeII GATC 3 cut(s) 56, 142, 659
NlaIII CATG 4 cut(s) 20, 78, 85, 618
NlaIV GGNNCC 2 cut(s) 39, 203
NmeAIII GCCGAG 2 cut(s) 91, 258
NspI RCATGY 1 cut(s) 78
NspV TTCGAA 1 cut(s) 118
PagI TCATGA 1 cut(s) 16
PciSI GCTCTTC 1 cut(s) 638
PkrI GCNGC 5 cut(s) 73, 313, 395, 409, 412
PleI GAGTC 1 cut(s) 613
PpsI GAGTC 1 cut(s) 613
PspN4I GGNNCC 2 cut(s) 39, 203
PstNI CAGNNNCTG 1 cut(s) 181
PsuI RGATCY 1 cut(s) 56
PvuII CAGCTG 1 cut(s) 526
SapI GCTCTTC 1 cut(s) 638
SatI GCNGC 5 cut(s) 72, 312, 394, 408, 411
Sau3AI GATC 3 cut(s) 56, 142, 659
SchI GAGTC 1 cut(s) 614
ScrFI CCNGG 1 cut(s) 149
SduI GDGCHC 1 cut(s) 42
SetI ASST 6 cut(s) 39, 222, 260, 403, 528, 650
SfaNI GCATC 2 cut(s) 15, 76
SfuI TTCGAA 1 cut(s) 118
SpeI ACTAGT 1 cut(s) 443
Sse9I AATT 1 cut(s) 516
SsiI CCGC 2 cut(s) 314, 581
SspMI CTAG 2 cut(s) 402, 444
StyD4I CCNGG 1 cut(s) 147
TaaI ACNGT 1 cut(s) 631
TaqI TCGA 3 cut(s) 118, 461, 641
TasI AATT 1 cut(s) 516
TscAI CASTG 1 cut(s) 378
TseI GCWGC 5 cut(s) 71, 311, 393, 407, 410
TspDTI ATGAA 4 cut(s) 33, 186, 354, 366
TspGWI ACGGA 1 cut(s) 588
TspRI CASTG 1 cut(s) 378
XceI RCATGY 1 cut(s) 78
XspI CTAG 2 cut(s) 402, 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.