MD08G1103700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0012357
Physical Location & Seq
Forward (+)
8765987 .. 8767250
1264 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1103700.v1.1.491

Sequence Viewer

Length: 627 bp
ATGAGCATCTTTCATCATGAAGAAGAACAGCCACCAAATCCTTCCAAAAGGTGCAAGTTTCTTGCTGCTTGTCTCACCGATGTGTTTGCGAATTGCCATACCAGCAGAAAGCTTTCGGCTTCGAGCCCTGCTGGGGAGGAGTTCCTGACAAGCGACTTTGATGAGGAACAAGAAGTTATTGTGTCTGCCATTCGAAGCCGTGCTATGGAAAAACTGACGCGCAAGCCGAGCAGTTTGACAGATAGCTTCTCTTTCGTTTACTCTTCGAAATCAGAAGATTTATTCATAACGCAGAAAGGAGCGGAAAAGCAAGAGGATCATGAAGATCACGAAGGCGATGAGAAAGAAGAATTTTTATCGGTTGCAAGCTGCCTTTCTTGCTGCTCAAGCACCGCTGCAACTAGAGACGTGTTTCTTTCTGTCAAGACAAGTTTGTCGCGTTGTTCGAGCCTTGGTGGGATCGAGTTTAGAGATTTTCCAAGGCAGTCCATAATTCAGCAATTCTATCATTGTGAGGGCTGGCCGTTTGGGCTTTGCCGGAAGGCTGTGTTGCTTCCACCGCTGCCAAAGTCGCCCTCTGAGTCGTGGATGTGGAGAAAAGGCACTAAGTTTGTTAAGATGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

209

Amino Acids

23.48

Weight (kDa)

5.9

Isoelectric Point (pI)

71.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012357)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47410 AT1G47410
fragaria_vesca FvH4_2g34660 FvH4_2g34701
malus_domestica MD08G1103700.v1.1 MD15G1085000.v1.1
prunus_persica Prupe.1G438800_v2.0.a1
pyrus_communis pycom08g08510 pycom15g08030
rosa_chinensis RchiOBHm_Chr6g0307431
rosa_laevigata RLG00000009861 RLG00000010714
rosa_multiflora Rmu_sc0000031.1_g000017
rosa_roxburghii Rroxscaffold_7G00161000
rosa_rugosa Rorug06G0358600
rosa_samantha Rh6BG430500 Rh6CG484300 Rh6DG471000
rosa_wichuraiana Rw6G040900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 433
AccBSI CCGCTC 1 cut(s) 302
AccII CGCG 2 cut(s) 220, 439
AciI CCGC 3 cut(s) 302, 393, 560
AclWI GGATC 2 cut(s) 324, 467
AcoI YGGCCR 1 cut(s) 521
AcsI RAATTY 1 cut(s) 350
AfiI CCNNNNNNNGG 2 cut(s) 133, 205
AflIII ACRYGT 1 cut(s) 408
AjiI CACGTC 1 cut(s) 409
AleI CACNNNNGTG 1 cut(s) 80
AluBI AGCT 3 cut(s) 112, 246, 369
AluI AGCT 3 cut(s) 112, 246, 369
Alw26I GTCTC 2 cut(s) 77, 399
AlwI GGATC 2 cut(s) 324, 467
AoxI GGCC 1 cut(s) 521
ApeKI GCWGC 5 cut(s) 65, 369, 381, 395, 562
ApoI RAATTY 1 cut(s) 350
Asp700I GAANNNNTTC 1 cut(s) 112
AspLEI GCGC 1 cut(s) 222
AsuHPI GGTGA 1 cut(s) 67
AsuII TTCGAA 2 cut(s) 193, 266
BanII GRGCYC 1 cut(s) 128
BbvI GCAGC 5 cut(s) 52, 356, 368, 382, 549
BccI CCATC 1 cut(s) 613
BceAI ACGGC 2 cut(s) 183, 508
BcgI CGANNNNNNTGC 2 cut(s) 68, 102
BcoDI GTCTC 2 cut(s) 77, 399
BfaI CTAG 1 cut(s) 402
BglI GCCNNNNNGGC 1 cut(s) 529
BisI GCNGC 5 cut(s) 66, 370, 382, 396, 563
BlsI GCNGC 5 cut(s) 67, 371, 383, 397, 564
BmgBI CACGTC 1 cut(s) 409
BmsI GCATC 1 cut(s) 15
Bpu14I TTCGAA 2 cut(s) 193, 266
BpuEI CTTGAG 1 cut(s) 370
BsaJI CCNNGG 2 cut(s) 451, 479
Bsc4I CCNNNNNNNGG 2 cut(s) 133, 205
BseDI CCNNGG 2 cut(s) 451, 479
BseGI GGATG 1 cut(s) 594
BseLI CCNNNNNNNGG 2 cut(s) 133, 205
BseMII CTCAG 1 cut(s) 570
BseRI GAGGAG 1 cut(s) 152
BseXI GCAGC 5 cut(s) 52, 356, 368, 382, 549
BseYI CCCAGC 1 cut(s) 131
Bsh1236I CGCG 2 cut(s) 220, 439
BshFI GGCC 1 cut(s) 523
BsiSI CCGG 1 cut(s) 538
BslI CCNNNNNNNGG 2 cut(s) 133, 205
BsmAI GTCTC 2 cut(s) 77, 399
BsmBI CGTCTC 1 cut(s) 399
BsnI GGCC 1 cut(s) 523
Bsp119I TTCGAA 2 cut(s) 193, 266
Bsp1286I GDGCHC 1 cut(s) 128
Bsp143I GATC 3 cut(s) 316, 325, 459
BspACI CCGC 3 cut(s) 302, 393, 560
BspANI GGCC 1 cut(s) 523
BspCNI CTCAG 1 cut(s) 571
BspFNI CGCG 2 cut(s) 220, 439
BspHI TCATGA 2 cut(s) 16, 319
BspPI GGATC 2 cut(s) 324, 467
BspT104I TTCGAA 2 cut(s) 193, 266
BsrBI CCGCTC 1 cut(s) 302
BssECI CCNNGG 2 cut(s) 451, 479
BssMI GATC 3 cut(s) 316, 325, 459
BssT1I CCWWGG 2 cut(s) 451, 479
Bst6I CTCTTC 1 cut(s) 268
BstBI TTCGAA 2 cut(s) 193, 266
BstC8I GCNNGC 3 cut(s) 224, 367, 521
BstDEI CTNAG 2 cut(s) 579, 606
BstF5I GGATG 1 cut(s) 594
BstFNI CGCG 2 cut(s) 220, 439
BstHHI GCGC 1 cut(s) 222
BstKTI GATC 3 cut(s) 319, 328, 462
BstMAI GTCTC 2 cut(s) 77, 399
BstMBI GATC 3 cut(s) 316, 325, 459
BstMWI GCNNNNNNNGC 7 cut(s) 102, 228, 378, 387, 529, 559, 571
BstUI CGCG 2 cut(s) 220, 439
BstV1I GCAGC 5 cut(s) 52, 356, 368, 382, 549
BsuRI GGCC 1 cut(s) 523
BtgZI GCGATG 1 cut(s) 351
BtrI CACGTC 1 cut(s) 409
BtsCI GGATG 1 cut(s) 594
Cac8I GCNNGC 3 cut(s) 224, 367, 521
CciI TCATGA 2 cut(s) 16, 319
CfoI GCGC 1 cut(s) 222
CseI GACGC 1 cut(s) 226
CviAII CATG 2 cut(s) 17, 320
DdeI CTNAG 2 cut(s) 579, 606
DpnI GATC 3 cut(s) 318, 327, 461
DpnII GATC 3 cut(s) 316, 325, 459
DrdI GACNNNNNNGTC 1 cut(s) 433
DseDI GACNNNNNNGTC 1 cut(s) 433
EaeI YGGCCR 1 cut(s) 521
Eam1104I CTCTTC 1 cut(s) 268
EarI CTCTTC 1 cut(s) 268
Eco130I CCWWGG 2 cut(s) 451, 479
Eco24I GRGCYC 1 cut(s) 128
EcoT14I CCWWGG 2 cut(s) 451, 479
EcoT38I GRGCYC 1 cut(s) 128
ErhI CCWWGG 2 cut(s) 451, 479
Esp3I CGTCTC 1 cut(s) 399
FaeI CATG 2 cut(s) 20, 323
FaiI YATR 6 cut(s) 18, 99, 206, 287, 321, 491
FatI CATG 2 cut(s) 16, 319
Fnu4HI GCNGC 5 cut(s) 66, 370, 382, 396, 563
FokI GGATG 1 cut(s) 601
FriOI GRGCYC 1 cut(s) 128
Fsp4HI GCNGC 5 cut(s) 66, 370, 382, 396, 563
FspBI CTAG 1 cut(s) 402
GlaI GCGC 1 cut(s) 221
GluI GCNGC 5 cut(s) 66, 370, 382, 396, 563
GsaI CCCAGC 1 cut(s) 135
HaeIII GGCC 1 cut(s) 523
HapII CCGG 1 cut(s) 538
HgaI GACGC 1 cut(s) 226
HhaI GCGC 1 cut(s) 222
Hin1II CATG 2 cut(s) 20, 323
Hin6I GCGC 1 cut(s) 220
HinP1I GCGC 1 cut(s) 220
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 1 cut(s) 581
HpaII CCGG 1 cut(s) 538
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 2 cut(s) 274, 580
Hpy188III TCNNGA 5 cut(s) 17, 145, 320, 329, 424
Hpy8I GTNNAC 1 cut(s) 259
HpyAV CCTTC 3 cut(s) 51, 326, 535
HpyCH4IV ACGT 1 cut(s) 408
HpyCH4V TGCA 3 cut(s) 54, 365, 398
HpyF10VI GCNNNNNNNGC 7 cut(s) 102, 228, 378, 387, 529, 559, 571
HpyF3I CTNAG 2 cut(s) 579, 606
HpySE526I ACGT 1 cut(s) 408
Hsp92II CATG 2 cut(s) 20, 323
HspAI GCGC 1 cut(s) 220
Kzo9I GATC 3 cut(s) 316, 325, 459
LmnI GCTCC 1 cut(s) 299
LpnPI CCDG 6 cut(s) 115, 117, 141, 158, 505, 551
Lsp1109I GCAGC 5 cut(s) 52, 356, 368, 382, 549
LweI GCATC 1 cut(s) 15
MaeI CTAG 1 cut(s) 402
MaeII ACGT 1 cut(s) 408
MalI GATC 3 cut(s) 318, 327, 461
MbiI CCGCTC 1 cut(s) 302
MboI GATC 3 cut(s) 316, 325, 459
MboII GAAGA 6 cut(s) 32, 35, 255, 287, 335, 359
MhlI GDGCHC 1 cut(s) 128
MluCI AATT 4 cut(s) 91, 350, 492, 500
MlyI GAGTC 1 cut(s) 590
MnlI CCTC 5 cut(s) 130, 157, 307, 508, 586
MroXI GAANNNNTTC 1 cut(s) 112
MseI TTAA 2 cut(s) 615, 625
MslI CAYNNNNRTG 1 cut(s) 80
MspA1I CMGCKG 2 cut(s) 395, 562
MspI CCGG 1 cut(s) 538
MvnI CGCG 2 cut(s) 220, 439
MwoI GCNNNNNNNGC 7 cut(s) 102, 228, 378, 387, 529, 559, 571
NdeII GATC 3 cut(s) 316, 325, 459
NlaIII CATG 2 cut(s) 20, 323
NmeAIII GCCGAG 1 cut(s) 252
NspV TTCGAA 2 cut(s) 193, 266
OliI CACNNNNGTG 1 cut(s) 80
PagI TCATGA 2 cut(s) 16, 319
PcsI WCGNNNNNNNCGW 2 cut(s) 224, 443
PdmI GAANNNNTTC 1 cut(s) 112
PkrI GCNGC 5 cut(s) 67, 371, 383, 397, 564
PleI GAGTC 1 cut(s) 589
PpsI GAGTC 1 cut(s) 589
PspFI CCCAGC 1 cut(s) 131
RseI CAYNNNNRTG 1 cut(s) 80
SaqAI TTAA 2 cut(s) 615, 625
SatI GCNGC 5 cut(s) 66, 370, 382, 396, 563
Sau3AI GATC 3 cut(s) 316, 325, 459
SchI GAGTC 1 cut(s) 590
SduI GDGCHC 1 cut(s) 128
SetI ASST 5 cut(s) 53, 114, 248, 371, 411
SfaNI GCATC 1 cut(s) 15
SfuI TTCGAA 2 cut(s) 193, 266
SmiMI CAYNNNNRTG 1 cut(s) 80
SmlI CTYRAG 1 cut(s) 385
SmoI CTYRAG 1 cut(s) 385
Sse9I AATT 4 cut(s) 91, 350, 492, 500
SsiI CCGC 3 cut(s) 302, 393, 560
SspMI CTAG 1 cut(s) 402
StyI CCWWGG 2 cut(s) 451, 479
TaiI ACGT 1 cut(s) 411
TaqI TCGA 5 cut(s) 122, 193, 266, 446, 462
TasI AATT 4 cut(s) 91, 350, 492, 500
Tru1I TTAA 2 cut(s) 615, 625
Tru9I TTAA 2 cut(s) 615, 625
TseI GCWGC 5 cut(s) 65, 369, 381, 395, 562
TspDTI ATGAA 3 cut(s) 33, 274, 336
XapI RAATTY 1 cut(s) 350
XmnI GAANNNNTTC 1 cut(s) 112
XspI CTAG 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.