AT1G47420

BEST Arabidopsis thaliana protein match is gamma

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011296
Physical Location & Seq
Reverse (-)
17395518 .. 17397263
1746 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G47420.1

Sequence Viewer

Length: 774 bp
ATGGGAACCCTAGGACGAGCGATTCACACTGTGGGTAATCGGATTCGTGGAACTGCCCAAGCCCAAGCTCGCGTTGGTTCTCTTCTTCAAGGAAGCCACCACATCGAGAAACATCTGTCGAGGCATCGGACGTTGATTACTGTGGCTCCGAACGCTTCTGTGATTGGTGATGTTCAGATCAATAAAGGCTCGTTCATTTCGTATGCAAGTGTTTCTCGTGATTTGCAGTATCCTCGTGCAATGGGAATGGGACAGGTCCGGAGATTTAGCGAAGATGTTTCTCACATGCCTGAAATGGAAGACTCTGATGTTCTGAATGCATTCAAAGACTTGATGGCTGCAGATTGGGCTGAGCTTCCTTCTGCTGTTGTTAAAGATGCTAAAACCGCGATATCGAAAAACACAGATGACAAGGCAGGGCAAGAGGCTTTGAAAAATGTGTTCCGAGCAGCTGAAGCTGTAGAGGAATTTGGTGGGATTCTCACTTCGATTAAGATGGAAATCGATGATAGCATTGGAATGAGTGGGGAGGGTGTGAAGCCTTTACCAAATGATATAACCGATGCGCTGCGTACTGCTTATCAGAGGTATGCTGAGTATCTAGACTCCTTTGAACCTGAAGAAGTCTACTTGAAGAAGAAGGTTGAGATGGAGTTGGGGACTAAGATGATCCACTTGAAGATGAGATGCAGCGGGCTTGGTTCTGAATGGGGAAAGGTTACTGTTCTTGGAACCTCAGGACTCTCGGGATCTTACGTGGAGCAAAGGGCCTAA

Protein Analysis

257

Amino Acids

28.11

Weight (kDa)

6.19

Isoelectric Point (pI)

37.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SDH5_plant PF14290 7 - 257 4.8e-123 Succinate dehydrogenase subunit 5, mitochondrial
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011296)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47420
fragaria_vesca FvH4_2g34650 FvH4_2g34650 FvH4_2g34710
malus_domestica MD04G1229600.v1.1 MD08G1103900.v1.1 MD15G1085100.v1.1
prunus_persica Prupe.1G439200_v2.0.a1 Prupe.1G439200_v2.0.a1
pyrus_communis pycom08g08520 pycom15g08040
rosa_chinensis RchiOBHm_Chr6g0307421
rosa_laevigata RLG00000010715
rosa_multiflora Rmu_sc0000031.1_g000016
rosa_roxburghii Rroxscaffold_7G00161010
rosa_rugosa Rorug06G0358500 Rorug06G0358600
rosa_samantha Rh6CG484200 Rh6DG470900
rosa_wichuraiana Rw6G040890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 627
AccII CGCG 2 cut(s) 72, 389
AccIII TCCGGA 1 cut(s) 258
AciI CCGC 2 cut(s) 387, 693
AclWI GGATC 2 cut(s) 664, 757
AcsI RAATTY 1 cut(s) 467
AcuI CTGAAG 2 cut(s) 474, 639
AdeI CACNNNGTG 1 cut(s) 31
AfaI GTAC 1 cut(s) 574
AgsI TTSAA 6 cut(s) 89, 325, 433, 614, 634, 679
AluBI AGCT 4 cut(s) 68, 355, 452, 458
AluI AGCT 4 cut(s) 68, 355, 452, 458
AlwI GGATC 2 cut(s) 664, 757
Ama87I CYCGRG 1 cut(s) 745
Aor13HI TCCGGA 1 cut(s) 258
AoxI GGCC 1 cut(s) 768
ApeKI GCWGC 4 cut(s) 338, 449, 568, 690
ApoI RAATTY 1 cut(s) 467
Asp700I GAANNNNTTC 1 cut(s) 320
AspA2I CCTAGG 1 cut(s) 10
AspLEI GCGC 1 cut(s) 568
AspS9I GGNCC 2 cut(s) 256, 768
AsuHPI GGTGA 1 cut(s) 179
AvaI CYCGRG 1 cut(s) 745
AvaII GGWCC 1 cut(s) 256
AvrII CCTAGG 1 cut(s) 10
AxyI CCTNAGG 1 cut(s) 736
BauI CACGAG 2 cut(s) 216, 234
BbsI GAAGAC 1 cut(s) 306
BbvI GCAGC 4 cut(s) 325, 461, 555, 702
BccI CCATC 3 cut(s) 328, 490, 643
BcgI CGANNNNNNTGC 2 cut(s) 215, 249
BciVI GTATCC 1 cut(s) 240
BfaI CTAG 2 cut(s) 11, 602
BfmI CTRYAG 2 cut(s) 339, 459
BfuI GTATCC 1 cut(s) 240
BisI GCNGC 4 cut(s) 339, 450, 569, 691
BlnI CCTAGG 1 cut(s) 10
BlpI GCTNAGC 1 cut(s) 351
BlsI GCNGC 4 cut(s) 340, 451, 570, 692
Bme18I GGWCC 1 cut(s) 256
BmeT110I CYCGRG 1 cut(s) 745
BmgT120I GGNCC 2 cut(s) 256, 768
BmiI GGNNCC 3 cut(s) 7, 147, 733
BmsI GCATC 4 cut(s) 133, 367, 553, 677
BpiI GAAGAC 1 cut(s) 306
Bpu1102I GCTNAGC 1 cut(s) 351
Bsa29I ATCGAT 1 cut(s) 504
BsaAI YACGTR 1 cut(s) 757
BsaBI GATNNNNATC 1 cut(s) 500
BsaJI CCNNGG 1 cut(s) 10
BsaWI WCCGGW 1 cut(s) 258
BsaXI ACNNNNNCTCC 2 cut(s) 130, 160
Bse21I CCTNAGG 1 cut(s) 736
Bse3DI GCAATG 1 cut(s) 246
Bse8I GATNNNNATC 1 cut(s) 500
BseAI TCCGGA 1 cut(s) 258
BseCI ATCGAT 1 cut(s) 504
BseDI CCNNGG 1 cut(s) 10
BseJI GATNNNNATC 1 cut(s) 500
BseMI GCAATG 1 cut(s) 246
BseMII CTCAG 3 cut(s) 342, 585, 750
BseXI GCAGC 4 cut(s) 325, 461, 555, 702
Bsh1236I CGCG 2 cut(s) 72, 389
BshFI GGCC 1 cut(s) 770
BshVI ATCGAT 1 cut(s) 504
BsiHKCI CYCGRG 1 cut(s) 745
BsiSI CCGG 1 cut(s) 259
BslFI GGGAC 2 cut(s) 264, 673
BsmFI GGGAC 2 cut(s) 264, 673
BsmI GAATGC 2 cut(s) 320, 322
BsnI GGCC 1 cut(s) 770
BsoBI CYCGRG 1 cut(s) 745
Bsp13I TCCGGA 1 cut(s) 258
Bsp143I GATC 3 cut(s) 177, 669, 749
Bsp1720I GCTNAGC 1 cut(s) 351
BspACI CCGC 2 cut(s) 387, 693
BspANI GGCC 1 cut(s) 770
BspCNI CTCAG 3 cut(s) 343, 586, 749
BspDI ATCGAT 1 cut(s) 504
BspEI TCCGGA 1 cut(s) 258
BspFNI CGCG 2 cut(s) 72, 389
BspLI GGNNCC 3 cut(s) 7, 147, 733
BspMAI CTGCAG 1 cut(s) 343
BspPI GGATC 2 cut(s) 664, 757
BsrDI GCAATG 1 cut(s) 246
BssECI CCNNGG 1 cut(s) 10
BssMI GATC 3 cut(s) 177, 669, 749
BssSI CACGAG 2 cut(s) 216, 234
BssT1I CCWWGG 1 cut(s) 10
Bst2BI CACGAG 2 cut(s) 216, 234
Bst4CI ACNGT 3 cut(s) 31, 142, 724
Bst6I CTCTTC 1 cut(s) 87
BstBAI YACGTR 1 cut(s) 757
BstC8I GCNNGC 2 cut(s) 70, 695
BstDEI CTNAG 4 cut(s) 351, 594, 663, 736
BstFNI CGCG 2 cut(s) 72, 389
BstHHI GCGC 1 cut(s) 568
BstKTI GATC 3 cut(s) 180, 672, 752
BstMBI GATC 3 cut(s) 177, 669, 749
BstMWI GCNNNNNNNGC 4 cut(s) 152, 347, 386, 455
BstNSI RCATGY 1 cut(s) 289
BstSFI CTRYAG 2 cut(s) 339, 459
BstUI CGCG 2 cut(s) 72, 389
BstV1I GCAGC 4 cut(s) 325, 461, 555, 702
BstV2I GAAGAC 1 cut(s) 306
BstX2I RGATCY 1 cut(s) 749
BstYI RGATCY 1 cut(s) 749
Bsu15I ATCGAT 1 cut(s) 504
Bsu36I CCTNAGG 1 cut(s) 736
BsuI GTATCC 1 cut(s) 240
BsuRI GGCC 1 cut(s) 770
BsuTUI ATCGAT 1 cut(s) 504
BtsIMutI CAGTG 1 cut(s) 27
Cac8I GCNNGC 2 cut(s) 70, 695
CfoI GCGC 1 cut(s) 568
Cfr13I GGNCC 2 cut(s) 256, 768
ClaI ATCGAT 1 cut(s) 504
Csp6I GTAC 1 cut(s) 573
CviAII CATG 1 cut(s) 286
CviQI GTAC 1 cut(s) 573
DdeI CTNAG 4 cut(s) 351, 594, 663, 736
DpnI GATC 3 cut(s) 179, 671, 751
DpnII GATC 3 cut(s) 177, 669, 749
DraIII CACNNNGTG 1 cut(s) 31
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 10
Eco32I GATATC 1 cut(s) 393
Eco47I GGWCC 1 cut(s) 256
Eco57I CTGAAG 2 cut(s) 474, 639
Eco81I CCTNAGG 1 cut(s) 736
Eco88I CYCGRG 1 cut(s) 745
EcoO109I RGGNCCY 1 cut(s) 768
EcoRV GATATC 1 cut(s) 393
EcoT14I CCWWGG 1 cut(s) 10
EcoT22I ATGCAT 1 cut(s) 322
ErhI CCWWGG 1 cut(s) 10
FaeI CATG 1 cut(s) 289
FaiI YATR 4 cut(s) 204, 287, 557, 591
FaqI GGGAC 2 cut(s) 264, 673
FatI CATG 1 cut(s) 285
FauI CCCGC 1 cut(s) 686
FblI GTMKAC 1 cut(s) 627
Fnu4HI GCNGC 4 cut(s) 339, 450, 569, 691
Fsp4HI GCNGC 4 cut(s) 339, 450, 569, 691
FspBI CTAG 2 cut(s) 11, 602
GlaI GCGC 1 cut(s) 567
GluI GCNGC 4 cut(s) 339, 450, 569, 691
HaeIII GGCC 1 cut(s) 770
HapII CCGG 1 cut(s) 259
HhaI GCGC 1 cut(s) 568
Hin1II CATG 1 cut(s) 289
Hin6I GCGC 1 cut(s) 566
HinP1I GCGC 1 cut(s) 566
HinfI GANTC 6 cut(s) 22, 43, 302, 478, 605, 741
HpaII CCGG 1 cut(s) 259
HphI GGTGA 1 cut(s) 179
Hpy166II GTNNAC 1 cut(s) 628
Hpy188I TCNGA 9 cut(s) 42, 129, 150, 177, 307, 315, 446, 585, 706
Hpy188III TCNNGA 6 cut(s) 106, 218, 259, 602, 738, 747
Hpy8I GTNNAC 1 cut(s) 628
HpyAV CCTTC 2 cut(s) 369, 634
HpyCH4III ACNGT 3 cut(s) 31, 142, 724
HpyCH4IV ACGT 2 cut(s) 131, 756
HpyCH4V TGCA 6 cut(s) 206, 226, 239, 320, 341, 690
HpyF10VI GCNNNNNNNGC 4 cut(s) 152, 347, 386, 455
HpyF3I CTNAG 4 cut(s) 351, 594, 663, 736
HpySE526I ACGT 2 cut(s) 131, 756
Hsp92II CATG 1 cut(s) 289
HspAI GCGC 1 cut(s) 566
Kpn2I TCCGGA 1 cut(s) 258
Kzo9I GATC 3 cut(s) 177, 669, 749
LmnI GCTCC 2 cut(s) 151, 760
LpnPI CCDG 6 cut(s) 239, 272, 303, 402, 630, 723
Lsp1109I GCAGC 4 cut(s) 325, 461, 555, 702
LweI GCATC 4 cut(s) 133, 367, 553, 677
MaeI CTAG 2 cut(s) 11, 602
MaeII ACGT 2 cut(s) 131, 756
MaeIII GTNAC 1 cut(s) 718
MalI GATC 3 cut(s) 179, 671, 751
MboI GATC 3 cut(s) 177, 669, 749
MboII GAAGA 8 cut(s) 74, 77, 284, 311, 632, 646, 649, 691
MflI RGATCY 1 cut(s) 749
MluCI AATT 1 cut(s) 467
MlyI GAGTC 3 cut(s) 296, 599, 735
MnlI CCTC 7 cut(s) 114, 243, 418, 457, 523, 579, 745
Mph1103I ATGCAT 1 cut(s) 322
MroI TCCGGA 1 cut(s) 258
MroXI GAANNNNTTC 1 cut(s) 320
MseI TTAA 2 cut(s) 372, 492
MslI CAYNNNNRTG 1 cut(s) 518
MspA1I CMGCKG 2 cut(s) 452, 693
MspI CCGG 1 cut(s) 259
Mva1269I GAATGC 2 cut(s) 320, 322
MvnI CGCG 2 cut(s) 72, 389
MwoI GCNNNNNNNGC 4 cut(s) 152, 347, 386, 455
NdeII GATC 3 cut(s) 177, 669, 749
NlaIII CATG 1 cut(s) 289
NlaIV GGNNCC 3 cut(s) 7, 147, 733
NsiI ATGCAT 1 cut(s) 322
NspI RCATGY 1 cut(s) 289
PcsI WCGNNNNNNNCGW 1 cut(s) 197
PctI GAATGC 2 cut(s) 320, 322
PdmI GAANNNNTTC 1 cut(s) 320
PfeI GAWTC 3 cut(s) 22, 43, 478
PkrI GCNGC 4 cut(s) 340, 451, 570, 692
PleI GAGTC 3 cut(s) 296, 599, 735
PpsI GAGTC 3 cut(s) 296, 599, 735
Ppu21I YACGTR 1 cut(s) 757
PspN4I GGNNCC 3 cut(s) 7, 147, 733
PspPI GGNCC 2 cut(s) 256, 768
PstI CTGCAG 1 cut(s) 343
PsuI RGATCY 1 cut(s) 749
PvuII CAGCTG 1 cut(s) 452
RsaI GTAC 1 cut(s) 574
RsaNI GTAC 1 cut(s) 573
RseI CAYNNNNRTG 1 cut(s) 518
SaqAI TTAA 2 cut(s) 372, 492
SatI GCNGC 4 cut(s) 339, 450, 569, 691
Sau3AI GATC 3 cut(s) 177, 669, 749
Sau96I GGNCC 2 cut(s) 256, 768
SchI GAGTC 3 cut(s) 296, 599, 735
SfaNI GCATC 4 cut(s) 133, 367, 553, 677
SfcI CTRYAG 2 cut(s) 339, 459
SinI GGWCC 1 cut(s) 256
SmiMI CAYNNNNRTG 1 cut(s) 518
Sse9I AATT 1 cut(s) 467
SsiI CCGC 2 cut(s) 387, 693
SspMI CTAG 2 cut(s) 11, 602
StyI CCWWGG 1 cut(s) 10
TaaI ACNGT 3 cut(s) 31, 142, 724
TaiI ACGT 2 cut(s) 134, 759
TaqI TCGA 5 cut(s) 105, 119, 395, 488, 504
TasI AATT 1 cut(s) 467
TfiI GAWTC 3 cut(s) 22, 43, 478
Tru1I TTAA 2 cut(s) 372, 492
Tru9I TTAA 2 cut(s) 372, 492
TscAI CASTG 1 cut(s) 34
TseI GCWGC 4 cut(s) 338, 449, 568, 690
TspDTI ATGAA 1 cut(s) 184
TspRI CASTG 1 cut(s) 34
VpaK11BI GGWCC 1 cut(s) 256
XapI RAATTY 1 cut(s) 467
XbaI TCTAGA 1 cut(s) 601
XceI RCATGY 1 cut(s) 289
XcmI CCANNNNNNNNNTGG 1 cut(s) 71
XmaJI CCTAGG 1 cut(s) 10
XmiI GTMKAC 1 cut(s) 627
XmnI GAANNNNTTC 1 cut(s) 320
XspI CTAG 2 cut(s) 11, 602
Zsp2I ATGCAT 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.