Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0011296

Physical Location & Seq

Genomic Coordinates Forward (+)

65263523 .. 65264508

Gene Structure 986 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG484200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGAGAAGATGATAGCTCTCAGATCGCTCTGCCGTTCACTCTCTTCCAGATCTTACCGAACAGCCGCCGTCGCCGCCGCCACCCAGCAGCTGCCACGTCACCAACCTCACCACCACTCCGCCGGCGCTGCTCGAACCCTCTTCAGTTTCGCTTCCCCAAACTCCAAGAACCAGTCTTCGGATGAACACAGGTCTCCTCTTTCAACCAGTTTGGGGAGTAGGCGGTTTTCCAGTAACGATGTGGGTCATTTTCCTGAGATTAAAGACCCTGTGCTGCTTAATGCTTTTAAGGACTTGATGGCTGCAAGTTGGGATGAGCTCCCTAAGCTTGTGGTCCGTGAAGTTAAGGCAGCATTGTCTAAGAACACTGATGATCAGACTGGCAAAGAGCATCTCATGAATGTGTTGCGTGCGGCCGAAGCTGTGGAGGAGTTTGGAGGGATGGTTATGCAGTTGAAGATGGATATGGATGACAGTGTCGGTCTGAGTGGAGAGGATGTGAAGCCGTTGTCAGATGAGTATGTGAATGCTCTGAAGACGATTTACAGTCGCTACGCTGCCTATTTGGATTCATTTGGGCCTGACGAGACCTATTTGAGGAAGAAGGTGGAGACTGAGCTGGGAACCAGGCTGATATACTTGAAGATGAGGTGTAGTGGCATTGGTTCTGAGTGGGGAAAGGTACTGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005749 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045257 GO:0045273 GO:0045281 GO:0045283 GO:0050896 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4370

Protein Analysis

230

Amino Acids

25.57

Weight (kDa)

7.79

Isoelectric Point (pI)

40.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SDH5_plant	PF14290	1 - 229	1.7e-95	Succinate dehydrogenase subunit 5, mitochondrial

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47420
fragaria_vesca	FvH4_2g34650 FvH4_2g34650 FvH4_2g34710
malus_domestica	MD04G1229600.v1.1 MD08G1103900.v1.1 MD15G1085100.v1.1
prunus_persica	Prupe.1G439200_v2.0.a1 Prupe.1G439200_v2.0.a1
pyrus_communis	pycom08g08520 pycom15g08040
rosa_chinensis	RchiOBHm_Chr6g0307421
rosa_laevigata	RLG00000010715
rosa_multiflora	Rmu_sc0000031.1_g000016
rosa_roxburghii	Rroxscaffold_7G00161010
rosa_rugosa	Rorug06G0358500 Rorug06G0358600
rosa_samantha	Rh6CG484200 Rh6DG470900
rosa_wichuraiana	Rw6G040890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	66, 75, 78, 120, 223, 413
AcoI	YGGCCR	1 cut(s)	414
AcuI	CTGAAG	2 cut(s)	127, 554
AfaI	GTAC	1 cut(s)	684
AfiI	CCNNNNNNNGG	3 cut(s)	178, 213, 597
AgsI	TTSAA	3 cut(s)	204, 457, 643
AjiI	CACGTC	1 cut(s)	98
AjnI	CCWGG	1 cut(s)	626
AluBI	AGCT	6 cut(s)	17, 91, 319, 328, 422, 619
AluI	AGCT	6 cut(s)	17, 91, 319, 328, 422, 619
Alw21I	GWGCWC	1 cut(s)	321
Alw26I	GTCTC	3 cut(s)	198, 581, 605
AlwNI	CAGNNNCTG	1 cut(s)	91
AoxI	GGCC	2 cut(s)	414, 578
ApeKI	GCWGC	7 cut(s)	88, 91, 128, 274, 302, 350, 557
AspLEI	GCGC	1 cut(s)	128
AspS9I	GGNCC	2 cut(s)	334, 578
AsuHPI	GGTGA	2 cut(s)	92, 101
AvaII	GGWCC	1 cut(s)	334
BanII	GRGCYC	1 cut(s)	321
BarI	GAAGNNNNNNTAC	2 cut(s)	527, 559
BbsI	GAAGAC	2 cut(s)	168, 542
Bbv12I	GWGCWC	1 cut(s)	321
BbvI	GCAGC	7 cut(s)	78, 100, 115, 261, 289, 362, 544
BccI	CCATC	3 cut(s)	292, 436, 454
BceAI	ACGGC	3 cut(s)	18, 53, 490
BciT130I	CCWGG	1 cut(s)	628
BclI	TGATCA	1 cut(s)	373
BcoDI	GTCTC	3 cut(s)	198, 581, 605
BfoI	RGCGCY	1 cut(s)	129
BglII	AGATCT	1 cut(s)	50
Bme1390I	CCNGG	1 cut(s)	628
Bme18I	GGWCC	1 cut(s)	334
BmgBI	CACGTC	1 cut(s)	98
BmgT120I	GGNCC	2 cut(s)	334, 578
BmiI	GGNNCC	1 cut(s)	625
BmrFI	CCNGG	1 cut(s)	628
BmsI	GCATC	1 cut(s)	400
BpiI	GAAGAC	2 cut(s)	168, 542
Bpu10I	CCTNAGC	1 cut(s)	324
BsaI	GGTCTC	2 cut(s)	198, 581
BsaXI	ACNNNNNCTCC	6 cut(s)	101, 131, 429, 459, 483, 513
Bsc4I	CCNNNNNNNGG	3 cut(s)	178, 213, 597
Bse118I	RCCGGY	1 cut(s)	122
Bse1I	ACTGG	4 cut(s)	172, 207, 231, 385
BseBI	CCWGG	1 cut(s)	628
BseGI	GGATG	5 cut(s)	187, 319, 447, 475, 502
BseLI	CCNNNNNNNGG	3 cut(s)	178, 213, 597
BseMII	CTCAG	5 cut(s)	34, 246, 476, 606, 660
BseNI	ACTGG	4 cut(s)	172, 207, 231, 385
BseRI	GAGGAG	2 cut(s)	186, 443
BseX3I	CGGCCG	1 cut(s)	414
BseXI	GCAGC	7 cut(s)	78, 100, 115, 261, 289, 362, 544
BseYI	CCCAGC	2 cut(s)	84, 619
Bsh1285I	CGRYCG	1 cut(s)	417
BshFI	GGCC	2 cut(s)	416, 580
BsiEI	CGRYCG	1 cut(s)	417
BsiHKAI	GWGCWC	1 cut(s)	321
BsiSI	CCGG	1 cut(s)	123
BslI	CCNNNNNNNGG	3 cut(s)	178, 213, 597
BsmAI	GTCTC	3 cut(s)	198, 581, 605
BsmI	GAATGC	1 cut(s)	532
BsnI	GGCC	2 cut(s)	416, 580
Bso31I	GGTCTC	2 cut(s)	198, 581
Bsp1286I	GDGCHC	1 cut(s)	321
Bsp143I	GATC	3 cut(s)	23, 50, 373
BspACI	CCGC	6 cut(s)	66, 75, 78, 120, 223, 413
BspANI	GGCC	2 cut(s)	416, 580
BspCNI	CTCAG	5 cut(s)	33, 247, 477, 607, 661
BspHI	TCATGA	1 cut(s)	396
BspLI	GGNNCC	1 cut(s)	625
BspTNI	GGTCTC	2 cut(s)	198, 581
BsrFI	RCCGGY	1 cut(s)	122
BsrI	ACTGG	4 cut(s)	172, 207, 231, 385
BssAI	RCCGGY	1 cut(s)	122
BssMI	GATC	3 cut(s)	23, 50, 373
Bst2UI	CCWGG	1 cut(s)	628
Bst4CI	ACNGT	2 cut(s)	476, 548
Bst6I	CTCTTC	2 cut(s)	49, 146
BstC8I	GCNNGC	2 cut(s)	124, 411
BstDEI	CTNAG	7 cut(s)	20, 255, 324, 360, 485, 615, 669
BstENI	CCTNNNNNAGG	1 cut(s)	595
BstF5I	GGATG	5 cut(s)	187, 319, 447, 475, 502
BstH2I	RGCGCY	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	128
BstKTI	GATC	3 cut(s)	26, 53, 376
BstMAI	GTCTC	3 cut(s)	198, 581, 605
BstMBI	GATC	3 cut(s)	23, 50, 373
BstMCI	CGRYCG	1 cut(s)	417
BstMWI	GCNNNNNNNGC	5 cut(s)	71, 74, 128, 325, 419
BstNI	CCWGG	1 cut(s)	628
BstSCI	CCNGG	1 cut(s)	626
BstV1I	GCAGC	7 cut(s)	78, 100, 115, 261, 289, 362, 544
BstV2I	GAAGAC	2 cut(s)	168, 542
BstX2I	RGATCY	1 cut(s)	50
BstYI	RGATCY	1 cut(s)	50
BstZI	CGGCCG	1 cut(s)	414
BsuRI	GGCC	2 cut(s)	416, 580
BtrI	CACGTC	1 cut(s)	98
BtsCI	GGATG	5 cut(s)	187, 319, 447, 475, 502
BtsIMutI	CAGTG	2 cut(s)	366, 481
Cac8I	GCNNGC	2 cut(s)	124, 411
CaiI	CAGNNNCTG	1 cut(s)	91
CciI	TCATGA	1 cut(s)	396
CfoI	GCGC	1 cut(s)	128
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	2 cut(s)	334, 578
Csp6I	GTAC	1 cut(s)	683
CviAII	CATG	1 cut(s)	397
CviQI	GTAC	1 cut(s)	683
DdeI	CTNAG	7 cut(s)	20, 255, 324, 360, 485, 615, 669
DpnI	GATC	3 cut(s)	25, 52, 375
DpnII	GATC	3 cut(s)	23, 50, 373
EaeI	YGGCCR	1 cut(s)	414
EagI	CGGCCG	1 cut(s)	414
Eam1104I	CTCTTC	2 cut(s)	49, 146
EarI	CTCTTC	2 cut(s)	49, 146
EciI	GGCGGA	1 cut(s)	109
Ecl136II	GAGCTC	1 cut(s)	319
EclXI	CGGCCG	1 cut(s)	414
Eco24I	GRGCYC	1 cut(s)	321
Eco31I	GGTCTC	2 cut(s)	198, 581
Eco47I	GGWCC	1 cut(s)	334
Eco52I	CGGCCG	1 cut(s)	414
Eco53kI	GAGCTC	1 cut(s)	319
Eco57I	CTGAAG	2 cut(s)	127, 554
EcoICRI	GAGCTC	1 cut(s)	319
EcoNI	CCTNNNNNAGG	1 cut(s)	595
EcoRII	CCWGG	1 cut(s)	626
EcoT38I	GRGCYC	1 cut(s)	321
FaeI	CATG	1 cut(s)	400
FaiI	YATR	6 cut(s)	398, 449, 467, 522, 637, 691
FatI	CATG	1 cut(s)	396
FbaI	TGATCA	1 cut(s)	373
FokI	GGATG	5 cut(s)	194, 326, 454, 482, 509
FriOI	GRGCYC	1 cut(s)	321
GlaI	GCGC	1 cut(s)	127
GsaI	CCCAGC	2 cut(s)	88, 623
HaeII	RGCGCY	1 cut(s)	129
HaeIII	GGCC	2 cut(s)	416, 580
HapII	CCGG	1 cut(s)	123
HhaI	GCGC	1 cut(s)	128
Hin1II	CATG	1 cut(s)	400
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HindIII	AAGCTT	1 cut(s)	326
HinfI	GANTC	1 cut(s)	569
HpaII	CCGG	1 cut(s)	123
HphI	GGTGA	2 cut(s)	92, 101
Hpy166II	GTNNAC	1 cut(s)	38
Hpy188I	TCNGA	7 cut(s)	23, 181, 378, 486, 514, 534, 670
Hpy188III	TCNNGA	3 cut(s)	48, 254, 397
Hpy8I	GTNNAC	1 cut(s)	38
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	1 cut(s)	598
HpyCH4III	ACNGT	2 cut(s)	476, 548
HpyCH4IV	ACGT	1 cut(s)	97
HpyCH4V	TGCA	2 cut(s)	305, 451
HpyF10VI	GCNNNNNNNGC	5 cut(s)	71, 74, 128, 325, 419
HpyF3I	CTNAG	7 cut(s)	20, 255, 324, 360, 485, 615, 669
HpySE526I	ACGT	1 cut(s)	97
Hsp92II	CATG	1 cut(s)	400
HspAI	GCGC	1 cut(s)	126
KroI	GCCGGC	1 cut(s)	122
KroNI	GCCGGC	1 cut(s)	124
Ksp22I	TGATCA	1 cut(s)	373
Kzo9I	GATC	3 cut(s)	23, 50, 373
LmnI	GCTCC	1 cut(s)	324
Lsp1109I	GCAGC	7 cut(s)	78, 100, 115, 261, 289, 362, 544
LweI	GCATC	1 cut(s)	400
MaeII	ACGT	1 cut(s)	97
MaeIII	GTNAC	2 cut(s)	98, 233
MalI	GATC	3 cut(s)	25, 52, 375
MboI	GATC	3 cut(s)	23, 50, 373
MboII	GAAGA	8 cut(s)	19, 36, 133, 168, 469, 547, 613, 655
MflI	RGATCY	1 cut(s)	50
MhlI	GDGCHC	1 cut(s)	321
MnlI	CCTC	8 cut(s)	117, 149, 207, 421, 431, 487, 591, 642
MreI	CGCCGGCG	1 cut(s)	122
MroNI	GCCGGC	1 cut(s)	122
MseI	TTAA	4 cut(s)	261, 279, 288, 345
MslI	CAYNNNNRTG	1 cut(s)	401
MspA1I	CMGCKG	1 cut(s)	91
MspI	CCGG	1 cut(s)	123
MspR9I	CCNGG	1 cut(s)	628
Mva1269I	GAATGC	1 cut(s)	532
MvaI	CCWGG	1 cut(s)	628
MwoI	GCNNNNNNNGC	5 cut(s)	71, 74, 128, 325, 419
NaeI	GCCGGC	1 cut(s)	124
NdeII	GATC	3 cut(s)	23, 50, 373
NgoMIV	GCCGGC	1 cut(s)	122
NlaIII	CATG	1 cut(s)	400
NlaIV	GGNNCC	1 cut(s)	625
NmuCI	GTSAC	1 cut(s)	98
PagI	TCATGA	1 cut(s)	396
PctI	GAATGC	1 cut(s)	532
PdiI	GCCGGC	1 cut(s)	124
PfeI	GAWTC	1 cut(s)	569
PflFI	GACNNNGTC	1 cut(s)	476
Psp124BI	GAGCTC	1 cut(s)	321
Psp6I	CCWGG	1 cut(s)	626
PspFI	CCCAGC	2 cut(s)	84, 619
PspGI	CCWGG	1 cut(s)	626
PspN4I	GGNNCC	1 cut(s)	625
PspPI	GGNCC	2 cut(s)	334, 578
PstNI	CAGNNNCTG	1 cut(s)	91
PsuI	RGATCY	1 cut(s)	50
PsyI	GACNNNGTC	1 cut(s)	476
PvuII	CAGCTG	1 cut(s)	91
RsaI	GTAC	1 cut(s)	684
RsaNI	GTAC	1 cut(s)	683
RseI	CAYNNNNRTG	1 cut(s)	401
SacI	GAGCTC	1 cut(s)	321
SaqAI	TTAA	4 cut(s)	261, 279, 288, 345
Sau3AI	GATC	3 cut(s)	23, 50, 373
Sau96I	GGNCC	2 cut(s)	334, 578
ScrFI	CCNGG	1 cut(s)	628
SduI	GDGCHC	1 cut(s)	321
SfaNI	GCATC	1 cut(s)	400
SgrAI	CRCCGGYG	1 cut(s)	122
SinI	GGWCC	1 cut(s)	334
SmiMI	CAYNNNNRTG	1 cut(s)	401
SsiI	CCGC	6 cut(s)	66, 75, 78, 120, 223, 413
SstI	GAGCTC	1 cut(s)	321
StyD4I	CCNGG	1 cut(s)	626
TaaI	ACNGT	2 cut(s)	476, 548
TaiI	ACGT	1 cut(s)	100
TaqI	TCGA	1 cut(s)	133
TaqII	GACCGA	1 cut(s)	470
TauI	GCSGC	4 cut(s)	68, 77, 80, 416
TfiI	GAWTC	1 cut(s)	569
Tru1I	TTAA	4 cut(s)	261, 279, 288, 345
Tru9I	TTAA	4 cut(s)	261, 279, 288, 345
TscAI	CASTG	2 cut(s)	373, 481
TseFI	GTSAC	1 cut(s)	98
TseI	GCWGC	7 cut(s)	88, 91, 128, 274, 302, 350, 557
Tsp45I	GTSAC	1 cut(s)	98
TspDTI	ATGAA	3 cut(s)	198, 413, 561
TspGWI	ACGGA	1 cut(s)	326
TspRI	CASTG	2 cut(s)	373, 481
Tth111I	GACNNNGTC	1 cut(s)	476
VpaK11BI	GGWCC	1 cut(s)	334
XagI	CCTNNNNNAGG	1 cut(s)	595
XcmI	CCANNNNNNNNNTGG	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.