Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0011296

Physical Location & Seq

Genomic Coordinates Reverse (-)

30984582 .. 30984929

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1229600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGATGCGAAGGCGACATTGTTCCGAGAATACTGATGACCAAACTGGCAAAGAGGTTGTCACTAATGTTTTCCGGGCAGCGAAGGCTGTTGATGAGTTCGGCGGGATGATTACTAATTTAAAGATGAAACTTGATGACAACATTGGTGCGAGCGAAGAAAATGTCAAGCCCTTGTCAGATGAGTACGTGAATGCACTGAAGACCATTTACAATCGCTACATTACCTATTTGGATGCATTTGGGCTTGAGGAAACCTATTTACGGAAGAAGGTTGAGACAGAGTTGGGAACTAAGTTGATATACTTGAAGATGAGATGCAGTGGAATCAGTTCTGAGTGGGAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005749 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045257 GO:0045273 GO:0045281 GO:0045283 GO:0050896 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4370

Protein Analysis

116

Amino Acids

13.27

Weight (kDa)

5.48

Isoelectric Point (pI)

29.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SDH5_plant	PF14290	6 - 113	5.5e-55	Succinate dehydrogenase subunit 5, mitochondrial

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47420
fragaria_vesca	FvH4_2g34650 FvH4_2g34650 FvH4_2g34710
malus_domestica	MD04G1229600.v1.1 MD08G1103900.v1.1 MD15G1085100.v1.1
prunus_persica	Prupe.1G439200_v2.0.a1 Prupe.1G439200_v2.0.a1
pyrus_communis	pycom08g08520 pycom15g08040
rosa_chinensis	RchiOBHm_Chr6g0307421
rosa_laevigata	RLG00000010715
rosa_multiflora	Rmu_sc0000031.1_g000016
rosa_roxburghii	Rroxscaffold_7G00161010
rosa_rugosa	Rorug06G0358500 Rorug06G0358600
rosa_samantha	Rh6CG484200 Rh6DG470900
rosa_wichuraiana	Rw6G040890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	102
AcuI	CTGAAG	1 cut(s)	218
AfaI	GTAC	1 cut(s)	185
AfiI	CCNNNNNNNGG	1 cut(s)	261
AgsI	TTSAA	1 cut(s)	307
Alw26I	GTCTC	1 cut(s)	269
ApeKI	GCWGC	1 cut(s)	77
ArsI	GACNNNNNNTTYG	4 cut(s)	42, 74, 147, 179
Asp700I	GAANNNNTTC	1 cut(s)	328
AsuC2I	CCSGG	1 cut(s)	74
BarI	GAAGNNNNNNTAC	2 cut(s)	191, 223
BbsI	GAAGAC	1 cut(s)	206
BbvI	GCAGC	1 cut(s)	89
BcnI	CCSGG	1 cut(s)	74
BcoDI	GTCTC	1 cut(s)	269
BisI	GCNGC	1 cut(s)	78
BlsI	GCNGC	1 cut(s)	79
Bme1390I	CCNGG	1 cut(s)	74
BmrFI	CCNGG	1 cut(s)	74
BmsI	GCATC	2 cut(s)	223, 305
BpiI	GAAGAC	1 cut(s)	206
BpuEI	CTTGAG	1 cut(s)	266
BpuMI	CCSGG	1 cut(s)	74
BsaAI	YACGTR	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	1 cut(s)	261
Bse1I	ACTGG	1 cut(s)	49
BseGI	GGATG	2 cut(s)	111, 238
BseLI	CCNNNNNNNGG	1 cut(s)	261
BseMII	CTCAG	1 cut(s)	324
BseNI	ACTGG	1 cut(s)	49
BseXI	GCAGC	1 cut(s)	89
BsiSI	CCGG	1 cut(s)	73
BslI	CCNNNNNNNGG	1 cut(s)	261
BsmAI	GTCTC	1 cut(s)	269
BsmI	GAATGC	1 cut(s)	196
BspACI	CCGC	1 cut(s)	102
BspCNI	CTCAG	1 cut(s)	325
BsrI	ACTGG	1 cut(s)	49
BstBAI	YACGTR	1 cut(s)	187
BstC8I	GCNNGC	1 cut(s)	151
BstDEI	CTNAG	2 cut(s)	291, 333
BstF5I	GGATG	2 cut(s)	111, 238
BstMAI	GTCTC	1 cut(s)	269
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstSCI	CCNGG	1 cut(s)	72
BstV1I	GCAGC	1 cut(s)	89
BstV2I	GAAGAC	1 cut(s)	206
BtsCI	GGATG	2 cut(s)	111, 238
BtsI	GCAGTG	1 cut(s)	325
BtsIMutI	CAGTG	2 cut(s)	194, 325
Cac8I	GCNNGC	1 cut(s)	151
Csp6I	GTAC	1 cut(s)	184
CviJI	RGCY	3 cut(s)	86, 169, 244
CviKI_1	RGCY	3 cut(s)	86, 169, 244
CviQI	GTAC	1 cut(s)	184
DdeI	CTNAG	2 cut(s)	291, 333
DraI	TTTAAA	1 cut(s)	120
Eco57I	CTGAAG	1 cut(s)	218
EcoT22I	ATGCAT	1 cut(s)	238
FaiI	YATR	1 cut(s)	301
FauI	CCCGC	1 cut(s)	95
Fnu4HI	GCNGC	1 cut(s)	78
FokI	GGATG	2 cut(s)	118, 245
Fsp4HI	GCNGC	1 cut(s)	78
GluI	GCNGC	1 cut(s)	78
HapII	CCGG	1 cut(s)	73
HinfI	GANTC	1 cut(s)	324
HpaII	CCGG	1 cut(s)	73
Hpy188I	TCNGA	3 cut(s)	25, 178, 334
HpyAV	CCTTC	3 cut(s)	3, 76, 262
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	3 cut(s)	194, 236, 318
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	2 cut(s)	291, 333
HpySE526I	ACGT	1 cut(s)	186
LpnPI	CCDG	2 cut(s)	30, 86
Lsp1109I	GCAGC	1 cut(s)	89
LweI	GCATC	2 cut(s)	223, 305
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	1 cut(s)	58
MboII	GAAGA	4 cut(s)	167, 211, 277, 319
MluCI	AATT	1 cut(s)	115
MnlI	CCTC	2 cut(s)	46, 241
Mph1103I	ATGCAT	1 cut(s)	238
MroXI	GAANNNNTTC	1 cut(s)	328
MseI	TTAA	1 cut(s)	119
MspI	CCGG	1 cut(s)	73
MspR9I	CCNGG	1 cut(s)	74
Mva1269I	GAATGC	1 cut(s)	196
MwoI	GCNNNNNNNGC	1 cut(s)	83
NciI	CCSGG	1 cut(s)	74
NmuCI	GTSAC	1 cut(s)	58
NsiI	ATGCAT	1 cut(s)	238
PctI	GAATGC	1 cut(s)	196
PdmI	GAANNNNTTC	1 cut(s)	328
PfeI	GAWTC	1 cut(s)	324
PkrI	GCNGC	1 cut(s)	79
Ppu21I	YACGTR	1 cut(s)	187
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
SaqAI	TTAA	1 cut(s)	119
SatI	GCNGC	1 cut(s)	78
ScrFI	CCNGG	1 cut(s)	74
SetI	ASST	5 cut(s)	57, 189, 227, 257, 273
SfaNI	GCATC	2 cut(s)	223, 305
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	1 cut(s)	115
SsiI	CCGC	1 cut(s)	102
StyD4I	CCNGG	1 cut(s)	72
TaiI	ACGT	1 cut(s)	189
TasI	AATT	1 cut(s)	115
TfiI	GAWTC	1 cut(s)	324
Tru1I	TTAA	1 cut(s)	119
Tru9I	TTAA	1 cut(s)	119
TscAI	CASTG	2 cut(s)	201, 325
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	1 cut(s)	77
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	1 cut(s)	140
TspGWI	ACGGA	1 cut(s)	277
TspRI	CASTG	2 cut(s)	201, 325
XmnI	GAANNNNTTC	1 cut(s)	328
Zsp2I	ATGCAT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.