Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0011296

Physical Location & Seq

Genomic Coordinates Reverse (-)

25677579 .. 25679561

Gene Structure 1983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g34650.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGAGAAGATGATAGCTCTCAGATCCCTCTACCGTTCTCTCTCTTCCAGATCTTACCGAACCGCCGCCGCCGCCGCCACCCATCATCTGCCACGTCACCACCACCACTCCGCCGCCGGCGCTGCTCGAACCCTCTTCAACTTCGCTTCCCCAAACTCCAAGAACCAATCTTTCGATGAACAGAGGTCTCCTCTTTCGACGAGTTTGGGGAGGGTGCGGTGTTTCAGTAACGATGTGGGTCATTTTCCTGAGATTAAAGACCCTCAGCTGCTCTACGCTTTCAAGGACTTGATGGCTGCAAATTGGGATGAGCTCCCTAGTACTCTTGTCACTAGAGTCAAGGCTGCATTGTCTAAGAACACTGATGACCAGGCTGGCAAAGAGCATCTCACCAATGTGTTGCGTGCCGCCGAAGCTGTGGAGGAGTTTGGAGGGATGGTTATGCAGCTGAAGATGGATATGGATGACAGTGTTGGTATCAGCGGAGAGAATGTGAAGAAGTTGTCGGATGAGTATGTGAATGCGCTGAAGACGATTTACAGTCGCTACGCTGCCTATTTGGATGCATTTGGGCCTGATGAGACCTACTTGCGGAAGAAGGTGGAGACTGAGTTGGGAACCAGGCTGATATACTTGAAGATGAGGTGTAGCGGCATTGGTTCTGAGTGGGGAAAGGTCAGCGTTCTCGGAACTTCTGGACTGTCAGGGTCATACGTTGAGCAAAGAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005749 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045257 GO:0045273 GO:0045281 GO:0045283 GO:0050896 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4370

Protein Analysis

244

Amino Acids

26.96

Weight (kDa)

8.74

Isoelectric Point (pI)

32.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SDH5_plant	PF14290	1 - 243	1e-108	Succinate dehydrogenase subunit 5, mitochondrial

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47420
fragaria_vesca	FvH4_2g34650 FvH4_2g34650 FvH4_2g34710
malus_domestica	MD04G1229600.v1.1 MD08G1103900.v1.1 MD15G1085100.v1.1
prunus_persica	Prupe.1G439200_v2.0.a1 Prupe.1G439200_v2.0.a1
pyrus_communis	pycom08g08520 pycom15g08040
rosa_chinensis	RchiOBHm_Chr6g0307421
rosa_laevigata	RLG00000010715
rosa_multiflora	Rmu_sc0000031.1_g000016
rosa_roxburghii	Rroxscaffold_7G00161010
rosa_rugosa	Rorug06G0358500 Rorug06G0358600
rosa_samantha	Rh6CG484200 Rh6DG470900
rosa_wichuraiana	Rw6G040890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	18
AcuI	CTGAAG	2 cut(s)	470, 548
AfaI	GTAC	1 cut(s)	322
AfiI	CCNNNNNNNGG	1 cut(s)	591
AgsI	TTSAA	3 cut(s)	139, 283, 637
AjiI	CACGTC	1 cut(s)	95
AjnI	CCWGG	2 cut(s)	369, 620
AleI	CACNNNNGTG	1 cut(s)	395
AluBI	AGCT	6 cut(s)	17, 268, 313, 416, 448, 728
AluI	AGCT	6 cut(s)	17, 268, 313, 416, 448, 728
Alw21I	GWGCWC	1 cut(s)	315
Alw26I	GTCTC	3 cut(s)	192, 575, 599
AlwI	GGATC	1 cut(s)	18
AoxI	GGCC	1 cut(s)	572
ApeKI	GCWGC	6 cut(s)	122, 268, 296, 344, 445, 551
AspLEI	GCGC	2 cut(s)	122, 526
AspS9I	GGNCC	1 cut(s)	572
AsuHPI	GGTGA	2 cut(s)	89, 382
BanII	GRGCYC	1 cut(s)	315
BarI	GAAGNNNNNNTAC	2 cut(s)	521, 553
BbsI	GAAGAC	1 cut(s)	536
Bbv12I	GWGCWC	1 cut(s)	315
BbvCI	CCTCAGC	1 cut(s)	264
BbvI	GCAGC	6 cut(s)	109, 255, 283, 331, 457, 538
BccI	CCATC	4 cut(s)	90, 286, 430, 448
BciT130I	CCWGG	2 cut(s)	371, 622
BcoDI	GTCTC	3 cut(s)	192, 575, 599
BfaI	CTAG	2 cut(s)	318, 333
BfoI	RGCGCY	1 cut(s)	123
BglII	AGATCT	1 cut(s)	50
BmcAI	AGTACT	1 cut(s)	322
Bme1390I	CCNGG	2 cut(s)	371, 622
BmgBI	CACGTC	1 cut(s)	95
BmgT120I	GGNCC	1 cut(s)	572
BmiI	GGNNCC	1 cut(s)	619
BmrFI	CCNGG	2 cut(s)	371, 622
BmsI	GCATC	2 cut(s)	394, 553
BpiI	GAAGAC	1 cut(s)	536
BplI	GAGNNNNNCTC	2 cut(s)	175, 207
Bpu10I	CCTNAGC	1 cut(s)	264
BsaI	GGTCTC	2 cut(s)	192, 575
BsaXI	ACNNNNNCTCC	8 cut(s)	92, 122, 423, 453, 477, 507, 596, 626
Bsc4I	CCNNNNNNNGG	1 cut(s)	591
Bse118I	RCCGGY	1 cut(s)	116
BseBI	CCWGG	2 cut(s)	371, 622
BseGI	GGATG	5 cut(s)	313, 441, 469, 514, 568
BseLI	CCNNNNNNNGG	1 cut(s)	591
BseMII	CTCAG	5 cut(s)	34, 240, 278, 600, 654
BseRI	GAGGAG	2 cut(s)	180, 437
BseXI	GCAGC	6 cut(s)	109, 255, 283, 331, 457, 538
BshFI	GGCC	1 cut(s)	574
BsiHKAI	GWGCWC	1 cut(s)	315
BsiSI	CCGG	1 cut(s)	117
BslI	CCNNNNNNNGG	1 cut(s)	591
BsmAI	GTCTC	3 cut(s)	192, 575, 599
BsmI	GAATGC	1 cut(s)	526
BsnI	GGCC	1 cut(s)	574
Bso31I	GGTCTC	2 cut(s)	192, 575
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp143I	GATC	2 cut(s)	23, 50
BspANI	GGCC	1 cut(s)	574
BspCNI	CTCAG	5 cut(s)	33, 241, 277, 601, 655
BspLI	GGNNCC	1 cut(s)	619
BspPI	GGATC	1 cut(s)	18
BspTNI	GGTCTC	2 cut(s)	192, 575
BsrFI	RCCGGY	1 cut(s)	116
BssAI	RCCGGY	1 cut(s)	116
BssMI	GATC	2 cut(s)	23, 50
Bst2UI	CCWGG	2 cut(s)	371, 622
Bst4CI	ACNGT	4 cut(s)	35, 470, 542, 702
Bst6I	CTCTTC	2 cut(s)	49, 140
BstC8I	GCNNGC	3 cut(s)	118, 376, 405
BstDEI	CTNAG	7 cut(s)	20, 249, 264, 354, 609, 663, 729
BstF5I	GGATG	5 cut(s)	313, 441, 469, 514, 568
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	2 cut(s)	122, 526
BstKTI	GATC	2 cut(s)	26, 53
BstMAI	GTCTC	3 cut(s)	192, 575, 599
BstMBI	GATC	2 cut(s)	23, 50
BstMWI	GCNNNNNNNGC	5 cut(s)	71, 74, 119, 122, 413
BstNI	CCWGG	2 cut(s)	371, 622
BstSCI	CCNGG	2 cut(s)	369, 620
BstV1I	GCAGC	6 cut(s)	109, 255, 283, 331, 457, 538
BstV2I	GAAGAC	1 cut(s)	536
BstX2I	RGATCY	2 cut(s)	23, 50
BstYI	RGATCY	2 cut(s)	23, 50
BsuRI	GGCC	1 cut(s)	574
BtrI	CACGTC	1 cut(s)	95
BtsCI	GGATG	5 cut(s)	313, 441, 469, 514, 568
BtsIMutI	CAGTG	2 cut(s)	360, 475
Cac8I	GCNNGC	3 cut(s)	118, 376, 405
CfoI	GCGC	2 cut(s)	122, 526
Cfr10I	RCCGGY	1 cut(s)	116
Cfr13I	GGNCC	1 cut(s)	572
Csp6I	GTAC	1 cut(s)	321
CviQI	GTAC	1 cut(s)	321
DdeI	CTNAG	7 cut(s)	20, 249, 264, 354, 609, 663, 729
DpnI	GATC	2 cut(s)	25, 52
DpnII	GATC	2 cut(s)	23, 50
Eam1104I	CTCTTC	2 cut(s)	49, 140
EarI	CTCTTC	2 cut(s)	49, 140
EciI	GGCGGA	1 cut(s)	100
Ecl136II	GAGCTC	1 cut(s)	313
Eco24I	GRGCYC	1 cut(s)	315
Eco31I	GGTCTC	2 cut(s)	192, 575
Eco53kI	GAGCTC	1 cut(s)	313
Eco57I	CTGAAG	2 cut(s)	470, 548
EcoICRI	GAGCTC	1 cut(s)	313
EcoRII	CCWGG	2 cut(s)	369, 620
EcoT22I	ATGCAT	1 cut(s)	568
EcoT38I	GRGCYC	1 cut(s)	315
FaiI	YATR	5 cut(s)	443, 461, 516, 631, 712
FokI	GGATG	5 cut(s)	320, 448, 476, 521, 575
FriOI	GRGCYC	1 cut(s)	315
FspBI	CTAG	2 cut(s)	318, 333
GlaI	GCGC	2 cut(s)	121, 525
HaeII	RGCGCY	1 cut(s)	123
HaeIII	GGCC	1 cut(s)	574
HapII	CCGG	1 cut(s)	117
HhaI	GCGC	2 cut(s)	122, 526
Hin6I	GCGC	2 cut(s)	120, 524
HinP1I	GCGC	2 cut(s)	120, 524
HinfI	GANTC	1 cut(s)	336
HpaII	CCGG	1 cut(s)	117
HphI	GGTGA	2 cut(s)	89, 382
Hpy188I	TCNGA	4 cut(s)	23, 508, 664, 689
Hpy188III	TCNNGA	3 cut(s)	48, 248, 696
Hpy99I	CGWCG	1 cut(s)	202
HpyAV	CCTTC	1 cut(s)	592
HpyCH4III	ACNGT	4 cut(s)	35, 470, 542, 702
HpyCH4IV	ACGT	2 cut(s)	94, 714
HpyCH4V	TGCA	4 cut(s)	299, 347, 445, 566
HpyF10VI	GCNNNNNNNGC	5 cut(s)	71, 74, 119, 122, 413
HpyF3I	CTNAG	7 cut(s)	20, 249, 264, 354, 609, 663, 729
HpySE526I	ACGT	2 cut(s)	94, 714
HspAI	GCGC	2 cut(s)	120, 524
KroI	GCCGGC	1 cut(s)	116
KroNI	GCCGGC	1 cut(s)	118
Kzo9I	GATC	2 cut(s)	23, 50
LmnI	GCTCC	1 cut(s)	318
Lsp1109I	GCAGC	6 cut(s)	109, 255, 283, 331, 457, 538
LweI	GCATC	2 cut(s)	394, 553
MaeI	CTAG	2 cut(s)	318, 333
MaeII	ACGT	2 cut(s)	94, 714
MaeIII	GTNAC	3 cut(s)	95, 227, 328
MalI	GATC	2 cut(s)	25, 52
MboI	GATC	2 cut(s)	23, 50
MboII	GAAGA	8 cut(s)	19, 36, 127, 463, 508, 541, 607, 649
MflI	RGATCY	2 cut(s)	23, 50
MhlI	GDGCHC	1 cut(s)	315
MluCI	AATT	1 cut(s)	301
MlyI	GAGTC	1 cut(s)	345
MmeI	TCCRAC	1 cut(s)	486
MnlI	CCTC	9 cut(s)	38, 143, 177, 201, 204, 273, 415, 425, 636
Mph1103I	ATGCAT	1 cut(s)	568
MreI	CGCCGGCG	1 cut(s)	116
MroNI	GCCGGC	1 cut(s)	116
MseI	TTAA	1 cut(s)	255
MslI	CAYNNNNRTG	1 cut(s)	395
MspA1I	CMGCKG	3 cut(s)	268, 448, 483
MspI	CCGG	1 cut(s)	117
MspR9I	CCNGG	2 cut(s)	371, 622
Mva1269I	GAATGC	1 cut(s)	526
MvaI	CCWGG	2 cut(s)	371, 622
MwoI	GCNNNNNNNGC	5 cut(s)	71, 74, 119, 122, 413
NaeI	GCCGGC	1 cut(s)	118
NdeII	GATC	2 cut(s)	23, 50
NgoMIV	GCCGGC	1 cut(s)	116
NlaIV	GGNNCC	1 cut(s)	619
NmuCI	GTSAC	2 cut(s)	95, 328
NsiI	ATGCAT	1 cut(s)	568
OliI	CACNNNNGTG	1 cut(s)	395
PctI	GAATGC	1 cut(s)	526
PdiI	GCCGGC	1 cut(s)	118
PleI	GAGTC	1 cut(s)	344
PpsI	GAGTC	1 cut(s)	344
Psp124BI	GAGCTC	1 cut(s)	315
Psp6I	CCWGG	2 cut(s)	369, 620
PspGI	CCWGG	2 cut(s)	369, 620
PspN4I	GGNNCC	1 cut(s)	619
PspPI	GGNCC	1 cut(s)	572
PsuI	RGATCY	2 cut(s)	23, 50
PvuII	CAGCTG	2 cut(s)	268, 448
RsaI	GTAC	1 cut(s)	322
RsaNI	GTAC	1 cut(s)	321
RseI	CAYNNNNRTG	1 cut(s)	395
SacI	GAGCTC	1 cut(s)	315
SaqAI	TTAA	1 cut(s)	255
Sau3AI	GATC	2 cut(s)	23, 50
Sau96I	GGNCC	1 cut(s)	572
ScaI	AGTACT	1 cut(s)	322
SchI	GAGTC	1 cut(s)	345
ScrFI	CCNGG	2 cut(s)	371, 622
SduI	GDGCHC	1 cut(s)	315
SfaNI	GCATC	2 cut(s)	394, 553
SgrAI	CRCCGGYG	1 cut(s)	116
SmiMI	CAYNNNNRTG	1 cut(s)	395
Sse9I	AATT	1 cut(s)	301
SspMI	CTAG	2 cut(s)	318, 333
SstI	GAGCTC	1 cut(s)	315
StyD4I	CCNGG	2 cut(s)	369, 620
TaaI	ACNGT	4 cut(s)	35, 470, 542, 702
TaiI	ACGT	2 cut(s)	97, 717
TaqI	TCGA	3 cut(s)	127, 174, 197
TasI	AATT	1 cut(s)	301
TatI	WGTACW	1 cut(s)	320
TauI	GCSGC	7 cut(s)	68, 71, 74, 77, 116, 410, 654
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	2 cut(s)	367, 475
TseFI	GTSAC	2 cut(s)	95, 328
TseI	GCWGC	6 cut(s)	122, 268, 296, 344, 445, 551
Tsp45I	GTSAC	2 cut(s)	95, 328
TspDTI	ATGAA	1 cut(s)	192
TspRI	CASTG	2 cut(s)	367, 475
XspI	CTAG	2 cut(s)	318, 333
ZrmI	AGTACT	1 cut(s)	322
Zsp2I	ATGCAT	1 cut(s)	568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.