Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0011296

Physical Location & Seq

Genomic Coordinates Reverse (-)

25718469 .. 25719241

Gene Structure 773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g34710.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGTTGCGTGCCGCTGAAGCTATGGAGGAGTTTGGAGGGATGGTTATGCAGCTGAAGATGGATATGGATGACAGTGTTGGTATCAGCGGAGAGAATGTGAAGAAGTTGTCGGATGAGTATGTGAATGCGCTGAAGACGATTTACAGTCCCTACGCTGCCTATTTGGATGCATTTGGGCCCGATGAGACCTACTTGCGGAAGAAGGTGGAGACTGAGTTGGGAACCAGGCTGATATACTTGAAGATGAGGTGTAGCGGCATAGGTTCTGAGTGGGGAAAGGTCAGTGTTCTTGGAACTTCTGGACTATCAGGGTCATATGTTGAGCAAAGAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005749 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045257 GO:0045273 GO:0045281 GO:0045283 GO:0050896 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4370

Protein Analysis

112

Amino Acids

12.25

Weight (kDa)

4.97

Isoelectric Point (pI)

21.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SDH5_plant	PF14290	2 - 111	2.1e-62	Succinate dehydrogenase subunit 5, mitochondrial

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47420
fragaria_vesca	FvH4_2g34650 FvH4_2g34650 FvH4_2g34710
malus_domestica	MD04G1229600.v1.1 MD08G1103900.v1.1 MD15G1085100.v1.1
prunus_persica	Prupe.1G439200_v2.0.a1 Prupe.1G439200_v2.0.a1
pyrus_communis	pycom08g08520 pycom15g08040
rosa_chinensis	RchiOBHm_Chr6g0307421
rosa_laevigata	RLG00000010715
rosa_multiflora	Rmu_sc0000031.1_g000016
rosa_roxburghii	Rroxscaffold_7G00161010
rosa_rugosa	Rorug06G0358500 Rorug06G0358600
rosa_samantha	Rh6CG484200 Rh6DG470900
rosa_wichuraiana	Rw6G040890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	12, 87, 196, 255
AcuI	CTGAAG	3 cut(s)	36, 74, 152
AfiI	CCNNNNNNNGG	1 cut(s)	195
AgsI	TTSAA	1 cut(s)	241
AjnI	CCWGG	1 cut(s)	224
AluBI	AGCT	3 cut(s)	20, 52, 332
AluI	AGCT	3 cut(s)	20, 52, 332
Alw26I	GTCTC	2 cut(s)	179, 203
AoxI	GGCC	1 cut(s)	176
ApaI	GGGCCC	1 cut(s)	180
ApeKI	GCWGC	2 cut(s)	49, 155
AspLEI	GCGC	1 cut(s)	130
AspS9I	GGNCC	2 cut(s)	176, 177
BaeGI	GKGCMC	1 cut(s)	180
BanII	GRGCYC	1 cut(s)	180
BarI	GAAGNNNNNNTAC	2 cut(s)	125, 157
BbsI	GAAGAC	1 cut(s)	140
BbvI	GCAGC	2 cut(s)	61, 142
BccI	CCATC	2 cut(s)	34, 52
BciT130I	CCWGG	1 cut(s)	226
BcoDI	GTCTC	2 cut(s)	179, 203
BisI	GCNGC	4 cut(s)	12, 50, 156, 256
BlsI	GCNGC	4 cut(s)	13, 51, 157, 257
Bme1390I	CCNGG	1 cut(s)	226
BmgT120I	GGNCC	2 cut(s)	176, 177
BmiI	GGNNCC	2 cut(s)	178, 223
BmrFI	CCNGG	1 cut(s)	226
BmsI	GCATC	1 cut(s)	157
BpiI	GAAGAC	1 cut(s)	140
BsaI	GGTCTC	1 cut(s)	179
BsaXI	ACNNNNNCTCC	6 cut(s)	27, 57, 81, 111, 200, 230
Bsc4I	CCNNNNNNNGG	1 cut(s)	195
BseBI	CCWGG	1 cut(s)	226
BseGI	GGATG	4 cut(s)	45, 73, 118, 172
BseLI	CCNNNNNNNGG	1 cut(s)	195
BseMII	CTCAG	2 cut(s)	204, 258
BseRI	GAGGAG	1 cut(s)	41
BseSI	GKGCMC	1 cut(s)	180
BseXI	GCAGC	2 cut(s)	61, 142
BshFI	GGCC	1 cut(s)	178
BslFI	GGGAC	1 cut(s)	132
BslI	CCNNNNNNNGG	1 cut(s)	195
BsmAI	GTCTC	2 cut(s)	179, 203
BsmFI	GGGAC	1 cut(s)	132
BsmI	GAATGC	1 cut(s)	130
BsnI	GGCC	1 cut(s)	178
Bso31I	GGTCTC	1 cut(s)	179
Bsp120I	GGGCCC	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	180
BspACI	CCGC	4 cut(s)	12, 87, 196, 255
BspANI	GGCC	1 cut(s)	178
BspCNI	CTCAG	2 cut(s)	205, 259
BspLI	GGNNCC	2 cut(s)	178, 223
BspTNI	GGTCTC	1 cut(s)	179
Bst2UI	CCWGG	1 cut(s)	226
Bst4CI	ACNGT	2 cut(s)	74, 146
BstC8I	GCNNGC	1 cut(s)	9
BstDEI	CTNAG	3 cut(s)	213, 267, 333
BstF5I	GGATG	4 cut(s)	45, 73, 118, 172
BstHHI	GCGC	1 cut(s)	130
BstMAI	GTCTC	2 cut(s)	179, 203
BstMWI	GCNNNNNNNGC	1 cut(s)	17
BstNI	CCWGG	1 cut(s)	226
BstSCI	CCNGG	1 cut(s)	224
BstSLI	GKGCMC	1 cut(s)	180
BstV1I	GCAGC	2 cut(s)	61, 142
BstV2I	GAAGAC	1 cut(s)	140
BsuRI	GGCC	1 cut(s)	178
BtsCI	GGATG	4 cut(s)	45, 73, 118, 172
BtsIMutI	CAGTG	2 cut(s)	79, 289
Cac8I	GCNNGC	1 cut(s)	9
CfoI	GCGC	1 cut(s)	130
Cfr13I	GGNCC	2 cut(s)	176, 177
CviJI	RGCY	5 cut(s)	20, 52, 178, 229, 332
CviKI_1	RGCY	5 cut(s)	20, 52, 178, 229, 332
DdeI	CTNAG	3 cut(s)	213, 267, 333
Eco24I	GRGCYC	1 cut(s)	180
Eco31I	GGTCTC	1 cut(s)	179
Eco57I	CTGAAG	3 cut(s)	36, 74, 152
EcoRII	CCWGG	1 cut(s)	224
EcoT22I	ATGCAT	1 cut(s)	172
EcoT38I	GRGCYC	1 cut(s)	180
FaiI	YATR	8 cut(s)	23, 47, 65, 120, 235, 260, 316, 318
FaqI	GGGAC	1 cut(s)	132
FauNDI	CATATG	1 cut(s)	316
Fnu4HI	GCNGC	4 cut(s)	12, 50, 156, 256
FokI	GGATG	4 cut(s)	52, 80, 125, 179
FriOI	GRGCYC	1 cut(s)	180
Fsp4HI	GCNGC	4 cut(s)	12, 50, 156, 256
GlaI	GCGC	1 cut(s)	129
GluI	GCNGC	4 cut(s)	12, 50, 156, 256
HaeIII	GGCC	1 cut(s)	178
HhaI	GCGC	1 cut(s)	130
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
Hpy188I	TCNGA	2 cut(s)	112, 268
Hpy188III	TCNNGA	1 cut(s)	300
HpyAV	CCTTC	1 cut(s)	196
HpyCH4III	ACNGT	2 cut(s)	74, 146
HpyCH4V	TGCA	2 cut(s)	49, 170
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
HpyF3I	CTNAG	3 cut(s)	213, 267, 333
HspAI	GCGC	1 cut(s)	128
LpnPI	CCDG	4 cut(s)	211, 238, 285, 294
Lsp1109I	GCAGC	2 cut(s)	61, 142
LweI	GCATC	1 cut(s)	157
MboII	GAAGA	5 cut(s)	67, 112, 145, 211, 253
MhlI	GDGCHC	1 cut(s)	180
MmeI	TCCRAC	1 cut(s)	90
MnlI	CCTC	3 cut(s)	19, 29, 240
Mph1103I	ATGCAT	1 cut(s)	172
MspA1I	CMGCKG	3 cut(s)	14, 52, 87
MspR9I	CCNGG	1 cut(s)	226
Mva1269I	GAATGC	1 cut(s)	130
MvaI	CCWGG	1 cut(s)	226
MwoI	GCNNNNNNNGC	1 cut(s)	17
NdeI	CATATG	1 cut(s)	316
NlaIV	GGNNCC	2 cut(s)	178, 223
NsiI	ATGCAT	1 cut(s)	172
PctI	GAATGC	1 cut(s)	130
PkrI	GCNGC	4 cut(s)	13, 51, 157, 257
Psp6I	CCWGG	1 cut(s)	224
PspGI	CCWGG	1 cut(s)	224
PspN4I	GGNNCC	2 cut(s)	178, 223
PspOMI	GGGCCC	1 cut(s)	176
PspPI	GGNCC	2 cut(s)	176, 177
PvuII	CAGCTG	1 cut(s)	52
SatI	GCNGC	4 cut(s)	12, 50, 156, 256
Sau96I	GGNCC	2 cut(s)	176, 177
ScrFI	CCNGG	1 cut(s)	226
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	8 cut(s)	22, 54, 191, 207, 251, 265, 282, 334
SfaNI	GCATC	1 cut(s)	157
SgeI	CNNG	9 cut(s)	20, 191, 205, 237, 238, 250, 302, 312, 321
SsiI	CCGC	4 cut(s)	12, 87, 196, 255
StyD4I	CCNGG	1 cut(s)	224
TaaI	ACNGT	2 cut(s)	74, 146
TauI	GCSGC	2 cut(s)	14, 258
TscAI	CASTG	2 cut(s)	79, 289
TseI	GCWGC	2 cut(s)	49, 155
TspRI	CASTG	2 cut(s)	79, 289
Zsp2I	ATGCAT	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.