Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011296

Physical Location & Seq

Genomic Coordinates Reverse (-)

37362398 .. 37364569

Gene Structure 2172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G439200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGAGAAAATGGTAGCTCTGAGATCGCTGTATCGCTCACTCTCCTCCAGATCTTATCGAGTAGCAGCCCTCAACCAGCAGCTGCTATGTCACTCCCAACCTCACCACCACAACGCTGGCGCTGCTCGAACCCTCTTCAGTTTCTCATCCCCCATGGTCAAGGACCTCTTTTCTGATGATTGCAGGTCCCCTCTTTCAACCGGTTTGGGAAGTAGGCGATTTTATAGTGATGATTTGAGTCACATGCCTCCCATTAAAGACCCTGAGCTGCTCAATGTTTTCAAAGATTTGATGGCTGCAAGTTGGGATAAGCTACCTGATAGTGTTGTCCATGATGCAAAGGCTGCAGTTTCCAAGAATACCGATGACCAGACTGGCAAGGAGTCTGTCACTAATGTCTTCCGTGCAGCCGAAGCTGTTGAGGAGTTCGGTGGGATGATTACAACATTGAAGATGGAACTCGATGACAGCATTGGTTTGAGTGGAGAGAATGTTAAGCCCTTGTCAGATGAGTACGTGAATGCACTAAAGACAATTTACAACCGCTATACTGCCTATTTGGATGCATTTGGGCCTGAGGAGACTTATTTGCGGAAGAAGGTAGAGACAGAGTTGGGAACCAAGTTGATATACTTGAAGATGAGATGCAGTGGCATAGGCTCTGAGTGGGGAAGGATCACTGTTCTCGGAACTTCTGGACTTTCCGGGTCATATGTTGAGCAAAGAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005749 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045257 GO:0045273 GO:0045281 GO:0045283 GO:0050896 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4370

Protein Analysis

244

Amino Acids

26.99

Weight (kDa)

6.32

Isoelectric Point (pI)

38.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47420
fragaria_vesca	FvH4_2g34650 FvH4_2g34650 FvH4_2g34710
malus_domestica	MD04G1229600.v1.1 MD08G1103900.v1.1 MD15G1085100.v1.1
prunus_persica	Prupe.1G439200_v2.0.a1 Prupe.1G439200_v2.0.a1
pyrus_communis	pycom08g08520 pycom15g08040
rosa_chinensis	RchiOBHm_Chr6g0307421
rosa_laevigata	RLG00000010715
rosa_multiflora	Rmu_sc0000031.1_g000016
rosa_roxburghii	Rroxscaffold_7G00161010
rosa_rugosa	Rorug06G0358500 Rorug06G0358600
rosa_samantha	Rh6CG484200 Rh6DG470900
rosa_wichuraiana	Rw6G040890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	174
AciI	CCGC	2 cut(s)	544, 592
AclWI	GGATC	1 cut(s)	683
AcuI	CTGAAG	1 cut(s)	121
AfaI	GTAC	1 cut(s)	515
AgeI	ACCGGT	1 cut(s)	200
AgsI	TTSAA	4 cut(s)	198, 283, 451, 637
AluBI	AGCT	6 cut(s)	17, 82, 268, 313, 416, 728
AluI	AGCT	6 cut(s)	17, 82, 268, 313, 416, 728
Alw26I	GTCTC	2 cut(s)	575, 599
AlwI	GGATC	1 cut(s)	683
AlwNI	CAGNNNCTG	1 cut(s)	82
AoxI	GGCC	1 cut(s)	572
ApeKI	GCWGC	8 cut(s)	65, 79, 82, 122, 268, 296, 344, 407
AsiGI	ACCGGT	1 cut(s)	200
AspLEI	GCGC	1 cut(s)	122
AspS9I	GGNCC	3 cut(s)	163, 186, 572
AsuC2I	CCSGG	1 cut(s)	706
AsuHPI	GGTGA	1 cut(s)	95
AvaII	GGWCC	2 cut(s)	163, 186
AxyI	CCTNAGG	1 cut(s)	576
BbsI	GAAGAC	1 cut(s)	391
BbvI	GCAGC	8 cut(s)	69, 77, 91, 109, 255, 283, 331, 419
BccI	CCATC	2 cut(s)	286, 448
BcnI	CCSGG	1 cut(s)	706
BcoDI	GTCTC	2 cut(s)	575, 599
BfmI	CTRYAG	1 cut(s)	345
BfoI	RGCGCY	1 cut(s)	123
BfuAI	ACCTGC	1 cut(s)	174
BglII	AGATCT	1 cut(s)	50
BisI	GCNGC	8 cut(s)	66, 80, 83, 123, 269, 297, 345, 408
BlsI	GCNGC	8 cut(s)	67, 81, 84, 124, 270, 298, 346, 409
Bme1390I	CCNGG	1 cut(s)	706
Bme18I	GGWCC	2 cut(s)	163, 186
BmgT120I	GGNCC	3 cut(s)	163, 186, 572
BmiI	GGNNCC	2 cut(s)	188, 619
BmrFI	CCNGG	1 cut(s)	706
BmsI	GCATC	3 cut(s)	325, 553, 635
BpiI	GAAGAC	1 cut(s)	391
BpmI	CTGGAG	1 cut(s)	31
Bpu10I	CCTNAGC	1 cut(s)	264
BpuMI	CCSGG	1 cut(s)	706
BsaAI	YACGTR	1 cut(s)	517
BsaJI	CCNNGG	1 cut(s)	153
BsaWI	WCCGGW	1 cut(s)	200
BsaXI	ACNNNNNCTCC	2 cut(s)	477, 507
Bse118I	RCCGGY	1 cut(s)	200
Bse1I	ACTGG	1 cut(s)	379
Bse21I	CCTNAGG	1 cut(s)	576
BseDI	CCNNGG	1 cut(s)	153
BseGI	GGATG	3 cut(s)	146, 441, 568
BseMII	CTCAG	4 cut(s)	11, 255, 567, 654
BseNI	ACTGG	1 cut(s)	379
BseRI	GAGGAG	3 cut(s)	34, 437, 593
BseXI	GCAGC	8 cut(s)	69, 77, 91, 109, 255, 283, 331, 419
BsgI	GTGCAG	1 cut(s)	426
BshFI	GGCC	1 cut(s)	574
BshTI	ACCGGT	1 cut(s)	200
BsiSI	CCGG	2 cut(s)	201, 705
BslFI	GGGAC	1 cut(s)	172
BsmAI	GTCTC	2 cut(s)	575, 599
BsmFI	GGGAC	1 cut(s)	172
BsmI	GAATGC	1 cut(s)	526
BsnI	GGCC	1 cut(s)	574
Bsp143I	GATC	3 cut(s)	23, 50, 675
Bsp19I	CCATGG	1 cut(s)	153
BspACI	CCGC	2 cut(s)	544, 592
BspANI	GGCC	1 cut(s)	574
BspCNI	CTCAG	4 cut(s)	12, 256, 568, 655
BspLI	GGNNCC	2 cut(s)	188, 619
BspMAI	CTGCAG	1 cut(s)	349
BspMI	ACCTGC	1 cut(s)	174
BspPI	GGATC	1 cut(s)	683
BsrFI	RCCGGY	1 cut(s)	200
BsrI	ACTGG	1 cut(s)	379
BssAI	RCCGGY	1 cut(s)	200
BssECI	CCNNGG	1 cut(s)	153
BssMI	GATC	3 cut(s)	23, 50, 675
BssT1I	CCWWGG	1 cut(s)	153
Bst4CI	ACNGT	1 cut(s)	682
Bst6I	CTCTTC	1 cut(s)	140
BstAPI	GCANNNNNTGC	1 cut(s)	344
BstBAI	YACGTR	1 cut(s)	517
BstC8I	GCNNGC	1 cut(s)	118
BstDEI	CTNAG	5 cut(s)	20, 264, 576, 663, 729
BstDSI	CCRYGG	1 cut(s)	153
BstF5I	GGATG	3 cut(s)	146, 441, 568
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	122
BstKTI	GATC	3 cut(s)	26, 53, 678
BstMAI	GTCTC	2 cut(s)	575, 599
BstMBI	GATC	3 cut(s)	23, 50, 675
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 344, 413
BstNSI	RCATGY	1 cut(s)	247
BstSCI	CCNGG	1 cut(s)	704
BstSFI	CTRYAG	1 cut(s)	345
BstV1I	GCAGC	8 cut(s)	69, 77, 91, 109, 255, 283, 331, 419
BstV2I	GAAGAC	1 cut(s)	391
BstX2I	RGATCY	1 cut(s)	50
BstXI	CCANNNNNNTGG	1 cut(s)	116
BstYI	RGATCY	1 cut(s)	50
Bsu36I	CCTNAGG	1 cut(s)	576
BsuRI	GGCC	1 cut(s)	574
BtgI	CCRYGG	1 cut(s)	153
BtsCI	GGATG	3 cut(s)	146, 441, 568
BtsI	GCAGTG	1 cut(s)	655
BtsIMutI	CAGTG	2 cut(s)	655, 678
BveI	ACCTGC	1 cut(s)	174
Cac8I	GCNNGC	1 cut(s)	118
CaiI	CAGNNNCTG	1 cut(s)	82
CfoI	GCGC	1 cut(s)	122
Cfr10I	RCCGGY	1 cut(s)	200
Cfr13I	GGNCC	3 cut(s)	163, 186, 572
Csp6I	GTAC	1 cut(s)	514
CspAI	ACCGGT	1 cut(s)	200
CviAII	CATG	3 cut(s)	154, 244, 332
CviQI	GTAC	1 cut(s)	514
DdeI	CTNAG	5 cut(s)	20, 264, 576, 663, 729
DpnI	GATC	3 cut(s)	25, 52, 677
DpnII	GATC	3 cut(s)	23, 50, 675
Eam1104I	CTCTTC	1 cut(s)	140
EarI	CTCTTC	1 cut(s)	140
Eco130I	CCWWGG	1 cut(s)	153
Eco47I	GGWCC	2 cut(s)	163, 186
Eco57I	CTGAAG	1 cut(s)	121
Eco81I	CCTNAGG	1 cut(s)	576
EcoO109I	RGGNCCY	2 cut(s)	163, 186
EcoT14I	CCWWGG	1 cut(s)	153
EcoT22I	ATGCAT	1 cut(s)	568
ErhI	CCWWGG	1 cut(s)	153
FaeI	CATG	3 cut(s)	157, 247, 335
FalI	AAGNNNNNCTT	2 cut(s)	152, 184
FaqI	GGGAC	1 cut(s)	172
FatI	CATG	3 cut(s)	153, 243, 331
FauNDI	CATATG	1 cut(s)	712
Fnu4HI	GCNGC	8 cut(s)	66, 80, 83, 123, 269, 297, 345, 408
FokI	GGATG	3 cut(s)	133, 448, 575
Fsp4HI	GCNGC	8 cut(s)	66, 80, 83, 123, 269, 297, 345, 408
GlaI	GCGC	1 cut(s)	121
GluI	GCNGC	8 cut(s)	66, 80, 83, 123, 269, 297, 345, 408
GsuI	CTGGAG	1 cut(s)	31
HaeII	RGCGCY	1 cut(s)	123
HaeIII	GGCC	1 cut(s)	574
HapII	CCGG	2 cut(s)	201, 705
HhaI	GCGC	1 cut(s)	122
Hin1II	CATG	3 cut(s)	157, 247, 335
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HinfI	GANTC	2 cut(s)	238, 383
HpaII	CCGG	2 cut(s)	201, 705
HphI	GGTGA	1 cut(s)	95
Hpy188I	TCNGA	5 cut(s)	21, 175, 508, 664, 689
Hpy188III	TCNNGA	2 cut(s)	48, 696
HpyAV	CCTTC	2 cut(s)	592, 666
HpyCH4III	ACNGT	1 cut(s)	682
HpyCH4IV	ACGT	1 cut(s)	516
HpyCH4V	TGCA	8 cut(s)	183, 299, 338, 347, 407, 524, 566, 648
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 344, 413
HpyF3I	CTNAG	5 cut(s)	20, 264, 576, 663, 729
HpySE526I	ACGT	1 cut(s)	516
Hsp92II	CATG	3 cut(s)	157, 247, 335
HspAI	GCGC	1 cut(s)	120
Kzo9I	GATC	3 cut(s)	23, 50, 675
Lsp1109I	GCAGC	8 cut(s)	69, 77, 91, 109, 255, 283, 331, 419
LweI	GCATC	3 cut(s)	325, 553, 635
MaeII	ACGT	1 cut(s)	516
MaeIII	GTNAC	3 cut(s)	89, 239, 388
MalI	GATC	3 cut(s)	25, 52, 677
MboI	GATC	3 cut(s)	23, 50, 675
MboII	GAAGA	5 cut(s)	127, 391, 463, 607, 649
MflI	RGATCY	1 cut(s)	50
MluCI	AATT	1 cut(s)	534
MlyI	GAGTC	2 cut(s)	247, 392
MnlI	CCTC	9 cut(s)	55, 80, 111, 143, 176, 201, 258, 415, 571
Mph1103I	ATGCAT	1 cut(s)	568
MseI	TTAA	2 cut(s)	255, 495
MspA1I	CMGCKG	1 cut(s)	82
MspI	CCGG	2 cut(s)	201, 705
MspR9I	CCNGG	1 cut(s)	706
Mva1269I	GAATGC	1 cut(s)	526
MwoI	GCNNNNNNNGC	3 cut(s)	122, 344, 413
NciI	CCSGG	1 cut(s)	706
NcoI	CCATGG	1 cut(s)	153
NdeI	CATATG	1 cut(s)	712
NdeII	GATC	3 cut(s)	23, 50, 675
NlaIII	CATG	3 cut(s)	157, 247, 335
NlaIV	GGNNCC	2 cut(s)	188, 619
NmuCI	GTSAC	3 cut(s)	89, 239, 388
NsiI	ATGCAT	1 cut(s)	568
NspI	RCATGY	1 cut(s)	247
PctI	GAATGC	1 cut(s)	526
PinAI	ACCGGT	1 cut(s)	200
PkrI	GCNGC	8 cut(s)	67, 81, 84, 124, 270, 298, 346, 409
PleI	GAGTC	2 cut(s)	246, 391
PpsI	GAGTC	2 cut(s)	246, 391
Ppu21I	YACGTR	1 cut(s)	517
PpuMI	RGGWCCY	2 cut(s)	163, 186
Psp5II	RGGWCCY	2 cut(s)	163, 186
PspN4I	GGNNCC	2 cut(s)	188, 619
PspPI	GGNCC	3 cut(s)	163, 186, 572
PspPPI	RGGWCCY	2 cut(s)	163, 186
PstI	CTGCAG	1 cut(s)	349
PstNI	CAGNNNCTG	1 cut(s)	82
PsuI	RGATCY	1 cut(s)	50
PvuII	CAGCTG	1 cut(s)	82
RsaI	GTAC	1 cut(s)	515
RsaNI	GTAC	1 cut(s)	514
SaqAI	TTAA	2 cut(s)	255, 495
SatI	GCNGC	8 cut(s)	66, 80, 83, 123, 269, 297, 345, 408
Sau3AI	GATC	3 cut(s)	23, 50, 675
Sau96I	GGNCC	3 cut(s)	163, 186, 572
SchI	GAGTC	2 cut(s)	247, 392
ScrFI	CCNGG	1 cut(s)	706
SfaNI	GCATC	3 cut(s)	325, 553, 635
SfcI	CTRYAG	1 cut(s)	345
SinI	GGWCC	2 cut(s)	163, 186
Sse9I	AATT	1 cut(s)	534
SsiI	CCGC	2 cut(s)	544, 592
StyD4I	CCNGG	1 cut(s)	704
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	1 cut(s)	682
TaiI	ACGT	1 cut(s)	519
TaqI	TCGA	3 cut(s)	58, 127, 462
TasI	AATT	1 cut(s)	534
Tru1I	TTAA	2 cut(s)	255, 495
Tru9I	TTAA	2 cut(s)	255, 495
TscAI	CASTG	2 cut(s)	655, 685
TseFI	GTSAC	3 cut(s)	89, 239, 388
TseI	GCWGC	8 cut(s)	65, 79, 82, 122, 268, 296, 344, 407
Tsp45I	GTSAC	3 cut(s)	89, 239, 388
TspGWI	ACGGA	1 cut(s)	392
TspRI	CASTG	2 cut(s)	655, 685
VpaK11BI	GGWCC	2 cut(s)	163, 186
XceI	RCATGY	1 cut(s)	247
XcmI	CCANNNNNNNNNTGG	1 cut(s)	113
Zsp2I	ATGCAT	1 cut(s)	568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.